Control of expression of the RNases J1 and J2 in bacillus subtilis

Journal of Bacteriology

Volumn 196, Issue 2, 2014, Pages 318-324

  Jamalli, Ailar ^a,b   Hébert, Agnès ^a,c   Zig, Léna ^a   Putzer, Harald ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^b GOLESTAN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^c IFP ENERGIES NOUVELLES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

HETERODIMER; RIBONUCLEASE; RIBONUCLEASE J1; RIBONUCLEASE J2; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; CONSENSUS SEQUENCE; CONTROLLED STUDY; ENZYME REGULATION; ENZYME SYNTHESIS; IN VIVO STUDY; NONHUMAN; POINT MUTATION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; START CODON; STOP CODON; TRANSCRIPTION INITIATION; TRANSLATION INITIATION;

EID: 84890941662     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01053-13     Document Type: Article

References (22)

1. Laalami S, Zig L, Putzer H. 25 September 2013. Initiation of mRNA decay in bacteria. Cell. Mol. Life Sci. http://dx.doi.org/10.1007/s00018-013-1472-4.
2. Even S, Pellegrini O, Zig L, Labas V, Vinh J, Brechemmier-Baey D, Putzer H. 2005. Ribonucleases J1 and J2: two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Res. 33:2141-2152. http://dx.doi.org/10.1093/nar/gki505.
3. Mathy N, Benard L, Pellegrini O, Daou R, Wen T, Condon C. 2007. 5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA. Cell 129:681-692. http://dx.doi.org/10.1016/j.cell.2007.02.051.
4. Mathy N, Hebert A, Mervelet P, Benard L, Dorleans A, Li de la Sierra-Gallay I, Noirot P, Putzer H, Condon C. 2010. Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour. Mol. Microbiol. 75:489-498. http://dx.doi.org/10.1111/j.1365-2958.2009.07004.x.
5. Li de la Sierra-Gallay I, Zig L, Jamalli A, Putzer H. 2008. Structural insights into the dual activity of RNase J. Nat. Struct. Mol. Biol. 15:206-212. http://dx.doi.org/10.1038/nsmb.1376.
6. Commichau FM, Rothe FM, Herzberg C, Wagner E, Hellwig D, Lehnik-Habrink M, Hammer E, Völker U, Stülke J. 2009. Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Mol. Cell. Proteomics 8:1350-1360. http://dx.doi.org/10.1074/mcp.M800546-MCP200.
7. Lehnik-Habrink M, Pfortner H, Rempeters L, Pietack N, Herzberg C, Stülke J. 2010. The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex. Mol. Microbiol. 77:958-971. http://dx.doi.org/10.1111/j.1365-2958.2010.07264.x.
8. Newman JA, Hewitt L, Rodrigues C, Solovyova AS, Harwood CR, Lewis RJ. 2012. Dissection of the network of interactions that links RNA processing with glycolysis in the Bacillus subtilis degradosome. J. Mol. Biol. 416:121-136. http://dx.doi.org/10.1016/j.jmb.2011.12.024.
9. Mäder U, Zig L, Kretschmer J, Homuth G, Putzer H. 2008. mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol. Microbiol. 70:183-196. http://dx.doi.org/10.1111/j.1365-2958.2008.06400.x.
10. Deikus G, Condon C, Bechhofer DH. 2008. Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover. J. Biol. Chem. 283:17158-17167. http://dx.doi.org/10.1074/jbc.M801461200.
11. Yao S, Sharp JS, Bechhofer DH. 2009. Bacillus subtilis RNase J1 endonuclease and 5' exonuclease activities in the turnover of DeltaermC mRNA. RNA 15:2331-2339. http://dx.doi.org/10.1261/rna.1749109.
12. Bruscella P, Shahbabian K, Laalami S, Putzer H. 2011. RNase Y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis. Mol. Microbiol. 81:1526-1541. http://dx.doi.org/10.1111/j.1365-2958.2011.07793.x.
13. Durand S, Gilet L, Bessieres P, Nicolas P, Condon C. 2012. Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet. 8:e1002520. http://dx.doi.org/10.1371/journal.pgen.1002520.
14. Britton RA, Wen T, Schaefer L, Pellegrini O, Uicker WC, Mathy N, Tobin C, Daou R, Szyk J, Condon C. 2007. Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol. Microbiol. 63:127-138. http://dx.doi.org/10.1111/j.1365-2958.2006.05499.x.
15. Yao S, Blaustein JB, Bechhofer DH. 2007. Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site. Nucleic Acids Res. 35:4464-4473. http://dx.doi.org/10.1093/nar/gkm460.
16. Gendron N, Putzer H, Grunberg-Manago M. 1994. Expression of both Bacillus subtilis threonyl-tRNA synthetase genes is autogenously regulated. J. Bacteriol. 176:486-494.
17. Weinrauch Y, Msadek T, Kunst F, Dubnau D. 1991. Sequence and properties of comQ, a new competence regulatory gene of Bacillus subtilis. J. Bacteriol. 173:5685-5693.
18. Mayford M, Weisblum B. 1989. Conformational alterations in the ermC transcript in vivo during induction. EMBO J. 8:4307-4314.
19. Putzer H, Gendron N, Grunberg-Manago M. 1992. Co-ordinate expression of the two threonyl-tRNA synthetase genes in Bacillus subtilis: control by transcriptional antitermination involving a conserved regulatory sequence. EMBO J. 11:3117-3127.
20. Doherty GP, Fogg MJ, Wilkinson AJ, Lewis PJ. 2010. Small subunits of RNA polymerase: localization, levels and implications for core enzyme composition. Microbiology 156:3532-3543. http://dx.doi.org/10.1099/mic.0.041566-0.
21. Vellanoweth RL, Rabinowitz JC. 1992. The influence of ribosomebinding-site elements on translational efficiency in Bacillus subtilis and Escherichia coli in vivo. Mol. Microbiol. 6:1105-1114. http://dx.doi.org/10.1111/j.1365-2958.1992.tb01548.x.
22. Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessieres P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Codani JJ, Connerton IF, Cummings NJ, Daniel RA, Denizot F, Devine KM, Dusterhoft A, Ehrlich SD, Emmerson PT, Entian KD, Errington J, Fabret C, Ferrari E, Foulger D, Fritz C, Fujita M, Fujita Y, Fuma S, Galizzi A, Galleron N, Ghim S-Y, Glaser P, Goffeau A, Golightly EJ, Grandi G, Guiseppi G, Guy BJ, Haga K, et al. 1997. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249-256. http://dx.doi.org/10.1038/36786.