Second order blind identification on the cerebral cortex

Journal of Neuroscience Methods

Volumn 223, Issue , 2014, Pages 40-49

  Wheland, David ^a   Pantazis, Dimitrios ^b  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Blind source separation (BSS); Cerebral cortex; Gray matter thickness; Independent component analysis (ICA); Second order blind identification (SOBI); Sulcal folding pattern

Indexed keywords

ADULT; ARTICLE; BRAIN CORTEX; BRAIN DEVELOPMENT; BRAIN FUNCTION; CHILD; CONTROLLED STUDY; CORTICAL THICKNESS (BRAIN); ELECTROENCEPHALOGRAM; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; INVESTIGATIVE PROCEDURES; MALE; MORPHOMETRICS; NEUROLOGICAL AND SENSORIAL PROCEDURES; NEUROPATHOLOGY; PRIORITY JOURNAL; SCHOOL CHILD; SECOND ORDER BLIND IDENTIFICATION; SIMULATION; SURFACE PROPERTY; YOUNG ADULT;

BLIND SOURCE SEPARATION (BSS); CEREBRAL CORTEX; GRAY MATTER THICKNESS; INDEPENDENT COMPONENT ANALYSIS (ICA); SECOND ORDER BLIND IDENTIFICATION (SOBI); SULCAL FOLDING PATTERN;

ALGORITHMS; ANIMALS; BRAIN MAPPING; CEREBRAL CORTEX; COMPUTER SIMULATION; HUMANS; PRINCIPAL COMPONENT ANALYSIS; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 84890849991     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2013.11.023     Document Type: Article

References (58)

1. Awate S.P., Yushkevich P., Song Z., Licht D., Gee J.C. Multivariate high-dimensional cortical folding analysis, combining complexity and shape, in neonates with congenital heart disease. Information processing in medical imaging 2009, 552-563. Springer-Verlag, Berlin Heidelberg, Germany.
2. Beckmann C., Smith S. Tensorial extensions of independent component analysis for multisubject fMRI analysis. Neuroimage 2005, 25(1):294-311.
3. Beckmann C., DeLuca M., Devlin J.T., Smith S.M. Investigations into resting-state connectivity using independent component analysis. Philosophical Transactions of the Royal Society B: Biological Sciences 2005, 360(1457):1001-1013.
4. Belouchrani A., Abed-Meraim K., Cardoso J.-F., Moulines E. Second-order blind separation of correlated sources. International conference digital signal processing 1993, 346-351.
5. Belouchrani A., Abed-Meraim K., Cardoso J.-F., Moulines E. A blind source separation technique using second-order statistics. IEEE Transactions on Signal Processing 1997, 45(2).
6. Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B: Methodological 1995, 289-300.
7. Calhoun V.D., Adali T., Hansen L.K., Larsen J., Pekar J.J. ICA of functional MRI data: an overview. International workshop on independent component analysis and blind signal separation 2003, 346-351.
8. Calhoun V.D., Kiehl K.A., Pearlson G.D. Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks. Proceedings of the IEEE 2008, 29(7):828-838.
9. Calhoun V.D., Liu J., AdalI T. A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and erp data. Neuroimage 2009, 45(1 (Suppl. 1)):S163-S172. [Mathematics in Brain Imaging].
10. Callan D.E., Callan A.M., Kroos C., Vatikiotis-Bateson E. Multimodal contribution to speech perception revealed by independent component analysis: a single-sweep EEG case study. Cognitive Brain Research 2001, 10(3):349-353.
11. Chen Z.J., He Y., Rosa-Neto P., Germann J., Evans A.C. Revealing modular architecture of human brain structural networks by using cortical thickness from MRI. Cerebral Cortex 2008, 18(10):2374-2381.
12. Dale A.M., Fischl B., Sereno M.I. Cortical surface-based analysis: I. Segmentation and surface reconstruction. Neuroimage 1999, 9(2):179-194.
13. Damoiseaux J., Rombouts S., Barkhof F., Scheltens P., Stam C., Smith S.M., Beckmann C. Consistent resting-state networks across healthy subjects. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(37):13848-13853.
14. Esposito F., Scarabino T., Hyvärinen A., Himberg J., Formisano E., Comani S., Tedeschi G., Goebel R., Seifritz E., Salle F.D. Independent component analysis of fMRI group studies by self-organizing clustering. Neuroimage 2005, 25(1):193-205.
15. Fischl B., Sereno M.I., Dale A.M. Cortical surface-based analysis: II. Inflation, flattening, and a surface-based coordinate system. Neuroimage 1999, 9(2):195-207.
16. Fox M.D., Snyder A.Z., Vincent J.L., Corbetta M., Essen D.C.V., Raichle M.E. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proceedings of the National Academy of Sciences of the United States of America 2005, 102(27):9673-9678.
17. Golub G.H., Van Loan C.F. Matrix computations (Johns Hopkins Studies in Mathematical Sciences) October 1996, The Johns Hopkins University Press, Baltimore, MD, USA. 3rd ed.
18. Hardan A.Y., Jou R.J., Keshavan M.S., Varma R., Minshew N.J. Increased frontal cortical folding in autism: a preliminary MRI study. Psychiatry Research: Neuroimaging 2004, 131(3):263-268.
19. He Y., Chen Z.J., Evans A.C. Small-world anatomical networks in the human brain revealed by cortical thickness from MRI. Cerebral Cortex 2007, 17(10):2407-2419.
20. Hyvärinen A., Karhunen J., Oja E. Independent component analysis 2001, Wiley-Interscience, USA.
21. Hyvärinen A., Köster U. A fast fixed-point algorithm for independent component analysis. Neural Computation 1997, 9:1483-1492.
22. Ikeda S., Toyama K. Independent component analysis for noisy data-MEG data analysis. Neural Networks 2000, 13(10):1063-1074.
23. Joshi A., Shattuck D., Thompson P., Leahy R. Surface-constrained volumetric brain registration using harmonic mappings. IEEE Transactions on Medical Imaging 2007, 26(December (12)):1657-1669.
24. Joshi A., Shattuck D., Thompson P., Leahy R. A parameterization-based numerical method for isotropic and anisotropic diffusion smoothing on non-flat surfaces. IEEE Transactions on Image Processing 2009, 18(June (6)):1358-1365.
25. Jost J. Universitext: Riemannian geometry and geometric analysis 2011, Springerverlag, Berlin, Heidelberg.
26. Joyce C.A., Gorodnitsky I.F., Kutas M. Automatic removal of eye movement and blink artifacts from EEG data using blind component separation. Psychophysiology 2004, 41(2):313-325.
27. Jung T.-P., Makeig S., Humphries C., Lee T.-W., Mckeown M.J., Iragui V., Sejnowski T.J. Removing electroencephalographic artifacts by blind source separation. Psychophysiology 2000, 37(2):163-178.
28. Jung T.-P., Makeig S., McKeown M., Bell A., Lee T.-W., Sejnowski T. Imaging brain dynamics using independent component analysis. Proceedings of the IEEE 2001, 89(July (7)):1107-1122.
29. Klemm M., Haueisen J., Ivanova G. Independent component analysis: comparison of algorithms for the investigation of surface electrical brain activity. Medical and Biological Engineering and Computing 2009, 47:413-423.
30. Korn M.R., Dyer C.R. 3-D multiview object representations for model-based object recognition. Pattern Recognition 1987, 20(1):91-103.
31. Kraitchik M. Mathematical recreations (a mosaic on the sphere) 1953, Dover Publications, Mineola, NY, USA.
32. Lerch J., Pruessner J., Zijdenbos A., Hampel H., Teipel S., Evans A. Focal decline of cortical thickness in Alzheimer's disease identified by computational neuroanatomy. Cerebral Cortex 2005, 15(7):995-1001.
33. Luders E., Thompson P., Narr K., Toga A., Jancke L., Gaser C., et al. A curvature-based approach to estimate local gyrification on the cortical surface. Neuroimage 2006, 29(4):1224-1230.
34. Makeig S., Jung T.-P., Bell A.J., Ghahremani D., Sejnowski T.J. Blind separation of auditory event-related brain responses into independent components. Proceedings of the National Academy of Sciences of the United States of America 1997, 94(20):10979-10984.
35. Matsuoka K., Ohoya M., Kawamoto M. A neural net for blind separation of nonstationary signals. Neural Networks 1995, 8(3):411-419.
36. McKeown M.J., Makeig S., G.Brown G., Jung T.-P., Kindermann S.S., Bell A.J., Sejnowski T.J. Analysis of fMRI data by blind separation into independent spatial components. Human Brain Mapping 1998, 6(3):160-188.
37. Meinecke F., Ziehe A., Kawanabe M., Muller K.-R. A resampling approach to estimate the stability of one-dimensional or multidimensional independent components. Biomedical Engineering, IEEE Transactions on 2002, 49(December (12)):1514-1525.
38. Moosmann M., Eichele T., Nordby H., Hugdahl K., Calhoun V.D. Joint independent component analysis for simultaneous EEG-fMRI: principle and simulation. International Journal of Psychophysiology 2008, 67(3):212-221. [integration of EEG and fMRI].
39. Narr K.L., Bilder R.M., Toga A.W., Woods R.P., Rex D.E., Szeszko P.R., Robinson D., Sevy S., Gunduz-Bruce H., Wang Y.-P., DeLuca H., Thompson P.M. Mapping cortical thickness and gray matter concentration in first episode schizophrenia. Cerebral Cortex 2005, 15(6):708-719.
40. Onton J., Westerfield M., Townsend J., Makeig S. Imaging human EEG dynamics using independent component analysis. Neuroscience and Biobehavioral Reviews 2006, 30(6):808-822. [methodological and conceptual advances in the study of brain-behavior dynamics: a multivariate lifespan perspective].
41. Pantazis D., Joshi A., Jiang J., Shattuck D.W., Bernstein L.E., Damasio H., Leahy R.M. Comparison of landmark-based and automatic methods for cortical surface registration. Neuroimage 2010, 49(3):2479-2493.
42. Sallet P.C., Elkis H., Alves T.M., Oliveira J.R., Sassi E., de Castro C.C., Busatto G.F., Gattaz W.F. Reduced cortical folding in Schizophrenia: an MRI morphometric study. American Journal of Psychiatry 2003, 160(9):1606-1613.
43. Sato W., Kochiyama T., Yoshikawa S., Matsumura M. Emotional expression boosts early visual processing of the face: Erp recording and its decomposition by independent component analysis. Neuroreport 2001, 12(4).
44. Schmithorst V.J., Holland S.K. A comparison of three methods for generating group statistical inferences from independent component analysis of fMRI. Journal of Magnetic Resonance Imaging 2004, 19(3):365-368.
45. Sowell E.R., Peterson B.S., Thompson P.M., Welcome S.E., Henkenius A.L., Toga A.W. Mapping cortical change across the human life span. Nature Neuroscience 2003, 6(3):309-315.
46. Stone J.V., Porrill J., Porter N.R., Wilkinson I.D. Spatiotemporal independent component analysis of event-related fMRI data using skewed probability density functions. Neuroimage 2002, 15(2):407-421.
47. Svensén M., Kruggel F., Benali H. ICA of fMRI group study data. Neuroimage 2002, 16(3, Part 1):551-563.
48. Tang A.C., Sutherland M.T., McKinney C.J. Validation of sobi components from high-density EEG. Neuroimage 2005, 25(2):539-553.
49. Theis F.J., Meyer-Bäse A., Lang E.W. Second-order blind source separation based on multi-dimensional autocovariances. Independent component analysis and blind signal separation. Vol. 3195 of Lecture Notes in Computer Science 2004, 726-733. Springer, Berlin, Heidelberg. C.G. Puntonet, A. Prieto (Eds.).
50. Tong L., Soon V.C., Huang Y.F., Liu R. Amuse: a new blind identification algorithm. IEEE international symposium on circuits and systems 1990, 1784-1787.
51. van de Ven V., Formisano E., Prvulovic D., Roeder C.H., Linden D.E. Functional connectivity as revealed by spatial independent component analysis of fMRI measurements during rest. Human Brain Mapping 2004, 22(3):165-178.
52. Vigário R., Jousmäki V., Haemaelaeninen M., Haft R., Oja E. Independent component analysis for identification of artifacts in magnetoencephalographic recordings. Advances in Neural Information Processing Systems 1998, 229-235.
53. Vigário R., Sarela J., Jousmiki V., Hamalainen M., Oja E. Independent component approach to the analysis of EEG and MEG recordings. IEEE Transactions on Biomedical Engineering 2000, 47(May (5)):589-593.
54. Vorobyov S., Cichocki A. Blind noise reduction for multisensory signals using ICA and subspace filtering, with application to EEG analysis. Biological Cybernetics 2002, 86:293-303.
55. Westad F., Kermit M. Cross validation and uncertainty estimates in independent component analysis. Analytica Chimica Acta 2003, 490(1-2):341-354. [papers presented at the 8th international conference on chemometrics and analytical chemistry].
56. Woods R.P., Grafton S.T., Holmes C.J., Cherry S.R., Mazziotta J.C. Automated image registration: I. General methods and intrasubject, intramodality validation. Journal of Computer Assisted Tomography 1998, 22(1):139-152.
57. Zhukov L., Weinstein D., Johnson C. Independent component analysis for EEG source localization. IEEE Engineering in Medicine and Biology Magazine 2000, 19(May (3)):87-96.
58. Zilles K., Schleicher A., Langemann C., Amunts K., Morosan P., Palomero-Gallagher N., Schormann T., Mohlberg H., Bürgel U., Steinmetz H., Schlaug G., Roland P.E. Reduced cortical folding in schizophrenia: an MRI morphometric study. Human Brain Mapping 1997, 5(4):218-221.