Isothermal protein detection assay based on high efficient T7 RNA polymerase transcription-mediated amplification system and graphene oxide fluorescence switch platform

Sensors and Actuators, B: Chemical

Volumn 193, Issue , 2014, Pages 178-184

  Zhu, Debin ^a   Xing, Xiaobo ^a   Ma, Wenge ^b   Lu, Suqin ^c   Su, Bihua ^b  

^a SOUTH CHINA NORMAL UNIVERSITY   (China)

^b GUANGZHOU CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^c SUN YAT SEN UNIVERSITY   (China)

Author keywords

Aptamer; Fluorescence switch; Graphene oxide; Protein detection; T7 RNA polymerase transcription; Thrombin

Indexed keywords

APTAMERS; FLUORESCENCE SWITCH; GRAPHENE OXIDES; PROTEIN DETECTION; T7 RNA POLYMERASE; THROMBIN;

CHEMICAL DETECTION; ENZYMES; GRAPHENE; ISOTHERMS; POLYMERS; PROTEINS; RNA; TRANSCRIPTION;

FLUORESCENCE;

EID: 84890492379     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2013.11.036     Document Type: Article

References (54)

1. S. Song, L. Wang, J. Li, J. Zhao, and C. Fan Aptamer-based biosensors Trends Anal. Chem. 27 2008 108 117
2. K.-M. Song, S. Lee, and C. Ban Aptamers and their biological applications Sensor 12 2012 612 631
3. C. Tuerk, and L. Gold Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase Science 249 1990 505 510
4. A.D. Ellington, and J.W. Szostak In vitro selection of RNA molecules that bind specific ligands Nature 346 1990 818 822
5. S.E. Osborne, and A.D. Ellington Nucleic acid selection and the challenge of combinatorial chemistry Chem. Rev. 97 1997 349 370 (Pubitemid 127659248)
6. D.W. Drolet, L. Moon-mcdermott, and T.S. Roming An enzyme-linked oligonucleotide assay Nat. Biotechnol. 14 1996 1021 1025
7. B.R. Baker, R.Y. Lai, M.S. Wood, E.H. Doctor, A.J. Heeger, and K.W. Plaxco An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids J. Am. Chem. Soc. 128 2006 3138 3139
8. R. Nutiu, and Y. Li Structure-switching signaling aptamers J. Am. Chem. Soc. 125 2003 4771 4778 (Pubitemid 36505368)
9. R. Nutiu, and Y. Li Aptamers with fluorescence-signaling properties Methods 37 2005 16 25 (Pubitemid 41443372)
10. V. Pavlov, B. Shlyahovsky, and I. Willner Fluorescence detection of DNA by the catalytic activation of an aptamer/thrombin complex J. Am. Chem. Soc. 127 2005 6522 6523 (Pubitemid 40664145)
11. V. Pavlov, Y. Xiao, B. Shlyahovsky, and I. Willner Aptamer-functionalized Au nanoparticles for the amplified optical detection of thrombin J. Am. Chem. Soc. 126 2004 11768 11769 (Pubitemid 39298307)
12. M. Levy, S.F. Cater, and A.D. Ellington Quantum-dot aptamer beacons for the detection of proteins Chem. Bio. Chem. 6 2005 2163 2166
13. T.C. Chu, F. Shieh, L.A. Lavery, M. Levy, R. Richards-Kortum, B.A. Korgel, and A.D. Ellington Labeling tumor cells with fluorescent nanocrystal-aptamer bioconjugates Biosens. Bioelectron. 21 2006 1859 1866
14. Y. Xiao, A.A. Lubin, A.J. Heeger, and K.W. Plaxco Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor Angew. Chem. Int. Ed. Engl. 44 2005 5456 5459 (Pubitemid 41273294)
15. D. Zhu, X. Zhou, and D. Xing A new kind of aptamer-based immunomagnetic electrochemiluminescence assay for quantitative detection of protein Biosens. Bioelectron. 26 2010 285 288
16. Y. Xiao, B.D. Piorek, K.W. Plaxco, and A.J. Heeger A reagentless signalon architecture for electronic, aptamer-based sensors via targetinduced strand displacement J. Am. Chem. Soc. 127 2005 17990 17991 (Pubitemid 43038446)
17. S. Fredriksson, M. Gullberg, J. Jarvius, C. Olsson, K. Pietras, S.M. Gustafsdottir, A. Ostman, and U. Landegren Protein detection using proximity-dependent DNA ligation assays Nat. Biotechnol. 20 2002 473 477 (Pubitemid 34495933)
18. X.L. Wang, F. Li, Y.H. Su, X. Sun, X.B. Li, H.J. Schluesener, F. Tang, and S.Q. Xu Ultrasensitive detection of protein using an aptamerbased exonuclease protection assay Anal. Chem. 76 2004 5605 5610 (Pubitemid 39313305)
19. S.M. Gustafsdottir, E. Schallmeiner, S. Fredriksson, M. Gullberg, O. Soderberg, M. Jarvius, J. Jarvius, M. Howell, and U. Landegren Proximity ligation assays for sensitive and specific protein analyses Anal. Biochem. 345 2005 2 9 (Pubitemid 41558189)
20. H. Zhang, Z. Wang, X.F. Li, and X.C. Le Ultrasensitive detection of proteins by amplification of affinity aptamers Angew. Chem. Int. Ed. Engl. 45 2006 1576 1580 (Pubitemid 44105274)
21. L. Zhou, L.-J. Ou, X. Chu, G.-L. Shen, and R.-Q. Yu Aptamer-based rolling circle amplification: a platform for electrochemical detection of protein Anal. Chem. 79 2007 7492 7500 (Pubitemid 47606117)
22. N.O. Fischer, T.M. Tarasow, and J.B.-H. Tok Protein detection via direct enzymatic amplification of short DNA aptamers Anal. Biochem. 373 2008 121 128 (Pubitemid 350258636)
23. S. Tabor, and C. Richardson A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes Proc. Nat. Acad. Sci. USA 82 1985 1074 1078 (Pubitemid 15100497)
24. J.H. Kim, and R.G. Larson Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules Nucleic Acids Res. 35 2007 3848 3858 (Pubitemid 47244676)
25. Z.B. Liu, X.L. Zhang, X.Q. Yan, Y.S. Chen, and J.G. Tian Nonlinear optical properties of graphene-based materials Chin. Sci. Bull. 57 2012 2971 2982
26. K. Lü, G.X. Zhao, and X.K. Wang A brief review of graphene-based material synthesis and its application in environmental pollution management Chin. Sci. Bull. 57 2012 1223 1234
27. M.S. Xu, Y. Gao, X. Yang, and H.Z. Chen Unique synthesis of graphene-based materials for clean energy and biological sensing applications Chin. Sci. Bull. 57 2012 3000 3009
28. Y. Guo, L. Deng, J. Li, S. Guo, E. Wang, and S. Dong Hemin-graphene hybrid nanosheets with intrinsic peroxidase-like activity for label-free colorimetric detection of single-nucleotide polymorphism ACS Nano 5 2011 1282 1290
29. W. Pisula, X. Feng, and K. Müllen Charge carrier transporting graphene-type molecules Chem. Mater. 23 2011 554 567
30. P.S. Lau, B.K. Coombes, and Y. Li A general approach to the construction of structure- switching reporters from RNA aptamers Angew. Chem. Int. Ed. Engl. 49 2010 7938 7942
31. A. Lerf, H. He, M. Forster, and J. Klinowski Structure of graphite oxide revisited J. Phys. Chem. B 102 1998 4477 4482 (Pubitemid 128578310)
32. H.Y. Hea, J. Klinowskia, M. Forsterb, and A. Lerf A new structural model for graphite oxide Chem. Phys. Lett. 287 1998 53 56 (Pubitemid 128183575)
33. C.H. Lu, H.H. Yang, C.L. Zhu, X. Chen, and G.N. Chen A graphene platform for sensing biomolecules Angew. Chem. Int. Ed. Engl. 48 2009 4785 4787
34. C.H. Lu, J. Li, M.H. Lin, Y.W. Wang, H.H. Yang, X. Chen, and G.N. Chen Amplified aptamer-based assay through catalytic recycling of the analyte Angew. Chem. Int. Ed. Engl. 49 2010 8454 8457
35. S.J. He, B. Song, D. Li, C.F. Zhu, W.P. Qi, Y.Q. Wen, L.H. Wang, S.P. Song, H.P. Fang, and C.H. Fan A graphene nanoprobe for rapid, sensitive, and multicolor fluorescent DNA analysis Adv. Funct. Mater. 20 2010 453 459
36. F. Li, Y. Huang, Q. Yang, Z. Zhong, D. Li, L. Wang, S. Song, and C. Fan A graphene-enhanced molecular beacon for homogeneous DNA detection Nanoscale 2 2010 1021 1026
37. Y. Wang, Z. Li, D. Hu, C.T. Lin, J. Li, and Y. Lin Aptamer/graphene oxide nanocomplex for in situ molecular probing in living cells J. Am. Chem. Soc. 132 2010 9274 9276
38. H. Dong, W. Gao, F. Yan, H. Ji, and H. Ju Fluorescence resonance energy transfer between quantum dots and graphene oxide for sensing biomolecules Anal. Chem. 82 2010 5511 5517
39. Y. Wen, F. Xing, S. He, S. Song, L. Wang, Y. Long, D. Li, and C. Fan A graphene-based fluorescent nanoprobe for silver(I) ions detection by using graphene oxide and a silver specific oligonucleotide Chem. Commun. 46 2010 2596 2598
40. X.M. Zhou, Y.H. Liao, and D. Xing Sensitive monitoring of RNA transcription levels using a graphene oxide fluorescence switch Chin. Sci. Bull. 58 2013 2634 2639
41. H. Yang, J. Ji, Y. Liu, J. Kong, and B. Liu An aptamer-based biosensor for sensitive thrombin detection Electrochem. Commun. 11 2009 38 40
42. X. Zhou, R. Duan, and D. Xing Highly sensitive detection of protein and small molecules based on aptamer-modified electrochemiluminescence nanoprobe Analyst 137 2012 1963 1969
43. E. Heyduk, and T. Heyduk Nucleic acid-based fluorescence sensors for detecting proteins Anal. Chem. 77 2005 1147 1156 (Pubitemid 40261785)
44. H. Cho, B.R. Baker, S. Wachsmann-Hogiu, C.V. Pagba, T.A. Laurence, S.M. Lane, L.P. Lee, and J.B. Tok Aptamer-based SERRS sensor for thrombin detection Nano Lett. 8 2008 4386 4390
45. L. Xue, X. Zhou, and D. Xing Sensitive and homogeneous protein detection based on target-triggered aptamer hairpin switch and nicking enzyme assisted fluorescence signal amplification Anal. Chem. 84 2012 3507 3513
46. S. Centi, S. Tombelli, M. Minunni, and M. Mascini Aptamer-based detection of plasma proteins by an electrochemical assay coupled to magnetic beads Anal. Chem. 79 2007 1466 1473
47. X. Zhou, Y. Tang, D. Xing, One-step homogeneous protein detection based on aptamer.
48. H. Wei, B. Li, J. Li, E. Wang, and S. Dong Simple and sensitive aptamer-based colorimetric sensing of protein using unmodified gold nanoparticle probes Chem. Commun. 2007 3735 3737 (Pubitemid 47404180)
49. R. Polslky, R. Gill, L. Kaganovsky, and I. Willner Nucleic acid-functionalized Pt nanoparticles: catalytic labels for the amplified electrochemical detection of biomolecules Anal. Chem. 78 2006 2268 2271
50. P. He, L. Shen, Y. Cao, and D. Li Ultrasensitive electrochemical detection of proteins by amplification of aptamer-nanoparticle bio bar codes Anal. Chem. 79 2007 8024 8029 (Pubitemid 350059997)
51. H. Xu, X. Mao, Q. Zeng, S. Wang, A.-N. Kawde, and G. Liu Aptamer-functionalized gold nanoparticles as probes in a dry-reagent strip biosensor for protein analysis Anal. Chem. 81 2009 669 675
52. H.P. Huang, and J.J. Zhu DNA aptamer-based QDs electrochemiluminescence biosensor for the detection of thrombin Biosens. Bioelectron. 25 2009 927 930
53. C.C. Huang, Z. Cao, H.T. Chang, and W. Tan Protein-protein interaction studies based on molecular aptamers by affinity capillary electrophoresis Anal. Chem. 76 2004 6973 6981 (Pubitemid 39600871)
54. Y. He, Z.-G. Wang, H.-W. Tang, and D.-W. Pang Low background signal platform for the detection of ATP: when a molecular aptamer beacon meets graphene oxide Biosens. Bioelectron. 29 2011 76 81