HIV-1 nucleocapsid proteins as molecular chaperones for tetramolecular antiparallel g-quadruplex formation

Journal of the American Chemical Society

Volumn 135, Issue 49, 2013, Pages 18575-18585

  Rajendran, Arivazhagan ^a   Endo, Masayuki ^b,c   Hidaka, Kumi ^a   Tran, Phong Lan Thao ^d   Mergny, Jean Louis ^d   Gorelick, Robert J ^e   Sugiyama, Hiroshi ^a,b,c  

^a KYOTO UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d UNIVERSITÉ DE BORDEAUX   (France)

^e FREDERICK NATIONAL LABORATORY FOR CANCER RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE ACTIVITY; MOLECULAR CHAPERONES; MONOMERIC FORMS; NUCLEOCAPSID PROTEINS; PROTEIN PARTICLES; QUADRUPLEX STRUCTURES; REAL TIME ANALYSIS; THERMODYNAMICALLY STABLE;

NUCLEIC ACIDS; PROTEINS;

DNA SEQUENCES;

CHAPERONE; DNA; GUANINE QUADRUPLEX; NUCLEIC ACID; NUCLEOCAPSID PROTEIN; NUCLEOCAPSID PROTEIN 15; NUCLEOCAPSID PROTEIN 7; PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; HUMAN IMMUNODEFICIENCY VIRUS 1; PROTEIN DEGRADATION; STOICHIOMETRY;

BASE SEQUENCE; G-QUADRUPLEXES; HIV-1; MICROSCOPY, ATOMIC FORCE; MOLECULAR CHAPERONES; MOLECULAR SEQUENCE DATA; NUCLEOCAPSID PROTEINS;

EID: 84890460352     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja409085j     Document Type: Article

References (50)

1. Rajendran, A.; Endo, M.; Hidaka, K.; Sugiyama, H. J. Am. Chem. Soc. 2013, 135, 1117-1123
2. Mashimo, T.; Yagi, H.; Sannohe, Y.; Rajendran, A.; Sugiyama, H. J. Am. Chem. Soc. 2010, 132, 14910-14918
3. Phan, A. T.; Modi, Y. S.; Patel, D. J. J. Am. Chem. Soc. 2004, 126, 8710-8716
4. Cheung, I.; Schertzer, M.; Rose, A.; Lansdorp, P. M. Nat. Genet. 2002, 31, 405-409
5. Biffi, G.; Tannahill, D.; McCafferty, J.; Balasubramanian, S. Nat. Chem. 2013, 5, 182-186
6. Rezler, E. M.; Bearss, D. J.; Hurley, L. H. Annu. Rev. Pharmacol. 2003, 43, 359-379
7. Huppert, J. L.; Balasubramanian, S. Nucleic Acids Res. 2007, 35, 406-413
8. Mani, P.; Yadav, V. K.; Das, S. K.; Chowdhury, S. PLoS One 2009, 4, e4399
9. Fang, G.; Cech, T. R. Cell 1993, 74, 875-885
10. Giraldo, R.; Suzuki, M.; Chapman, L.; Rhodes, D. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 7658-7662
11. Erlitzki, R.; Fry, M. J. Biol. Chem. 1997, 272, 15881-15890
12. Muniyappa, K.; Anuradha, S.; Byers, B. Mol. Cell. Biol. 2000, 20, 1361-1369
13. Arimondo, P. B.; Riou, J.-F.; Mergny, J.-L.; Tazi, J.; Sun, J.-S.; Garestier, T.; Helene, C. Nucleic Acids Res. 2000, 28, 4832-4838
14. Uliel, L.; Weisman-Shomer, P.; Oren-Jazan, H.; Newcomb, T.; Loeb, L. A.; Fry, M. J. Biol. Chem. 2000, 275, 33134-33141
15. Baran, N.; Pucshansky, L.; Marco, Y.; Benjamin, S.; Manor, H. Nucleic Acids Res. 1997, 25, 297-303
16. Sun, H.; Bennett, R. J.; Maizels, N. Nucleic Acids Res. 1999, 27, 1978-1984
17. Paeschke, K.; Capra, J. A.; Zakian, V. A. Cell 2011, 145, 678-691
18. Sun, H.; Karow, J. K.; Hickson, I. D.; Maizels, N. J. Biol. Chem. 1998, 273, 27587-27592
19. Esté, J. A.; Cabrera, C.; Schols, D.; Cherepanov, P.; Gutierrez, A.; Witvrouw, M.; Pannecougue, C.; Debyser, Z.; Rando, R. F.; Clotet, B.; Desmyter, J.; Clercg, E. D. Mol. Pharmacol. 1998, 53, 340-345
20. Rando, R. F.; Ojwang, J.; Elbaggari, A.; Reyes, G. R.; Tinder, R.; McGrath, M. S.; Hogan, M. E. J. Biol. Chem. 1995, 270, 1754-1760
21. Swanstrom, R.; Wills, J. W. In Retroviruses Coffin, J. M.; Hughes, S. H.; Varmus, H., Eds.; Cold Spring Harbor Laboratory Press: New York, 1997; pp 263-334.
22. Levin, J. G.; Guo, J.; Rouzina, I.; Musier-Forsyth, K. Prog. Nucleic Acid Res. Mol. Biol. 2005, 80, 217-286
23. Lyonnais, S.; Gorelick, R. J.; Mergny, J.-L.; Cam, E. L.; Mirambeau, G. Nucleic Acids Res. 2003, 31, 5754-5763
24. Kankia, B. I.; Barany, G.; Musier-Forsyth, K. Nucleic Acids Res. 2005, 33, 4395-4403
25. Venczel, E. A.; Sen, D. J. Mol. Biol. 1996, 257, 219-224
26. Rothemund, P. W. K. Nature 2006, 440, 297-302
27. Rajendran, A.; Endo, M.; Sugiyama, H. Chem. Rev. 2013, 10.1021/cr300253x
28. Hagan, N.; Fabris, D. Biochemistry 2003, 42, 10736-10745
29. Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. J. Am. Chem. Soc. 2010, 132, 1592-1597
30. Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Angew. Chem., Int. Ed. 2010, 49, 9412-9416
31. Rajendran, A.; Endo, M.; Sugiyama, H. Angew. Chem., Int. Ed. 2012, 51, 874-890
32. Rinker, S.; Ke, Y.; Liu, Y.; Chhabra, R.; Yan, H. Nat. Nanotechnol. 2008, 3, 418-422
33. Rajendran, A.; Endo, M.; Sugiyama, H. Adv. Protein Chem. Struct. Biol. 2012, 87, 5-55
34. Rajendran, A.; Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. J. Am. Chem. Soc. 2011, 133, 14488-14491
35. Rajendran, A.; Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. ACS Nano 2011, 5, 665-671
36. Rajendran, A.; Endo, M.; Hidaka, K.; Tran, P. L. T.; Mergny, J.-L.; Sugiyama, H. Nucleic Acids Res. 2013, 41, 8738-8747
37. Sravani, M.; Nagaveni, V.; Prabhakar, S.; Vairamani, M. Rapid Commun. Mass Spectrom. 2011, 25, 2095-2098
38. Mukundan, V. T.; Do, N. Q.; Phan, A. T. Nucleic Acids Res. 2011, 39, 8984-8991
39. Rajendran, A.; Endo, M.; Hidaka, K.; Tran, P. L. T.; Teulade-Fichou, M.-P.; Mergny, J.-L.; Sugiyama, H. (2013, submitted.
40. Sannohe, Y.; Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. J. Am. Chem. Soc. 2010, 132, 16311-16313
41. Dhakal, S.; Mao, H.; Rajendran, A.; Endo, M.; Sugiyama, H. In Guanine Quartets: Structure and Application; Spindler, L.; Fritzsche, W., Eds.; The Royal Society of Chemistry: Cambridge, 2013; pp 73-85.
42. Guo, J.; Wu, T.; Anderson, J.; Kane, B. F.; Johnson, D. G.; Gorelick, R. J.; Henderson, L. E.; Levin, J. G. J. Virol. 2000, 74, 8980-8988
43. Guo, J.; Wu, T.; Kane, B. F.; Johnson, D. G.; Henderson, L. E.; Gorelick, R. J.; Levin, J. G. J. Virol. 2002, 76, 4370-4378
44. Roldan, A.; Warren, O. U.; Russell, R. S.; Liang, C.; Wainberg, M. A. J. Biol. Chem. 2005, 280, 17488-17496
45. Cruceanu, M.; Urbaneja, M. A.; Hixson, C. V.; Johnson, D. G.; Datta, S. A.; Fivash, M. J.; Stephen, A. G.; Fisher, R. J.; Gorelick, R. J.; Casas-Finet, J. R.; Rein, A.; Rouzina, L.; Williams, M. C. Nucleic Acids Res. 2006, 34, 593-605
46. Schneider, S. W.; Lärmer, J.; Henderson, R. M.; Oberleithner, H. Pflügers Arch.- Eur. J. Physiol. 1998, 435, 362-367
47. Mela, I.; Kranaster, R.; Henderson, R. M.; Balasubramanian, S.; Edwardson, J. M. Biochemistry 2011, 51, 578-585
48. Oncley, J. L.; Scatchard, G.; Brown, A. J. Phys. Colloid Chem. 1947, 51, 184-198
49. Durchschlag, H.; Zipper, P. J. Appl. Crystallogr. 1997, 30, 803-807
50. Grant, E. H. Phys. Med. Biol. 1957, 2, 17-28