메뉴 건너뛰기




Volumn 1844, Issue 1 PART A, 2014, Pages 82-87

Data Standardization and Sharing - The work of the HUPO-PSI

Author keywords

Data standardization; Human Proteomics Organization; Mass spectrometry; Molecular interactions; Proteomics; Proteomics Standards Initiative

Indexed keywords

ALLOSTERISM; AMINO ACID SEQUENCE; BINDING SITE; CAPILLARY ELECTROPHORESIS; COLUMN CHROMATOGRAPHY; CONTROLLED VOCABULARY; DATA PROCESSING; FRAGMENTATION REACTION; GEL ELECTROPHORESIS; GENE INTERACTION; INFORMATION DISSEMINATION; LIQUID CHROMATOGRAPHY; MARKUP LANGUAGE; MOLECULAR INTERACTION; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REFERENCE DATABASE; REVIEW; STANDARDIZATION; STATISTICAL ANALYSIS; TANDEM MASS SPECTROMETRY;

EID: 84890425013     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2013.03.011     Document Type: Review
Times cited : (19)

References (43)
  • 4
    • 1642579024 scopus 로고    scopus 로고
    • The Human Proteome Organization Plasma Proteome Project pilot phase: Reference specimens, technology platform comparisons, and standardized data submissions and analyses
    • G.S. Omenn The Human Proteome Organization Plasma Proteome Project pilot phase: reference specimens, technology platform comparisons, and standardized data submissions and analyses Proteomics 4 2004 1235 1240
    • (2004) Proteomics , vol.4 , pp. 1235-1240
    • Omenn, G.S.1
  • 5
    • 29244457242 scopus 로고    scopus 로고
    • Human liver proteome project: Plan, progress, and perspectives
    • F. He Human liver proteome project: plan, progress, and perspectives Mol. Cell. Proteomics 4 2005 1841 1848
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1841-1848
    • He, F.1
  • 6
    • 23044444021 scopus 로고    scopus 로고
    • HUPO Brain Proteome Project Pilot Studies: Bioinformatics at work
    • C. Stephan, K. Reidegeld, H.E. Meyer, and M. Hamacher HUPO Brain Proteome Project Pilot Studies: bioinformatics at work Proteomics 5 2005 2716 2717
    • (2005) Proteomics , vol.5 , pp. 2716-2717
    • Stephan, C.1    Reidegeld, K.2    Meyer, H.E.3    Hamacher, M.4
  • 12
    • 84860331423 scopus 로고    scopus 로고
    • JmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats
    • J. Griss, F. Reisinger, H. Hermjakob, and J.A. Vizcaíno jmzReader: a Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats Proteomics 12 2012 795 798
    • (2012) Proteomics , vol.12 , pp. 795-798
    • Griss, J.1    Reisinger, F.2    Hermjakob, H.3    Vizcaíno, J.A.4
  • 13
    • 84859229683 scopus 로고    scopus 로고
    • PymzML - Python module for high-throughput bioinformatics on mass spectrometry data
    • T. Bald, J. Barth, A. Niehues, M. Specht, M. Hippler, and C. Fufezan pymzML - Python module for high-throughput bioinformatics on mass spectrometry data Bioinformatics 28 2012 1052 1053
    • (2012) Bioinformatics , vol.28 , pp. 1052-1053
    • Bald, T.1    Barth, J.2    Niehues, A.3    Specht, M.4    Hippler, M.5    Fufezan, C.6
  • 20
    • 80655129284 scopus 로고    scopus 로고
    • JTraML: An open source Java API for TraML, the PSI standard for sharing SRM transitions
    • K. Helsens, M.Y. Brusniak, E. Deutsch, R.L. Moritz, and L. Martens jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions J. Proteome Res. 10 2011 5260 5263
    • (2011) J. Proteome Res. , vol.10 , pp. 5260-5263
    • Helsens, K.1    Brusniak, M.Y.2    Deutsch, E.3    Moritz, R.L.4    Martens, L.5
  • 21
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • D. Kessner, M. Chambers, R. Burke, D. Agus, and P. Mallick ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 24 2008 2534 2536
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 22
    • 79952198684 scopus 로고    scopus 로고
    • OpenMS and TOPP: Open source software for LC-MS data analysis
    • A. Bertsch, C. Gröpl, K. Reinert, and O. Kohlbacher OpenMS and TOPP: open source software for LC-MS data analysis Methods Mol. Biol. 696 2011 353 367
    • (2011) Methods Mol. Biol. , vol.696 , pp. 353-367
    • Bertsch, A.1    Gröpl, C.2    Reinert, K.3    Kohlbacher, O.4
  • 24
    • 77449108855 scopus 로고    scopus 로고
    • The PeptideAtlas project
    • E.W. Deutsch The PeptideAtlas project Methods Mol. Biol. 604 2010 285 296
    • (2010) Methods Mol. Biol. , vol.604 , pp. 285-296
    • Deutsch, E.W.1
  • 29
    • 15944393188 scopus 로고    scopus 로고
    • The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments
    • S. Orchard, L. Montecchi-Palazzi, H. Hermjakob, and R. Apweiler The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments Pac. Symp. Biocomput. 2005 186 196
    • (2005) Pac. Symp. Biocomput. , pp. 186-196
    • Orchard, S.1    Montecchi-Palazzi, L.2    Hermjakob, H.3    Apweiler, R.4
  • 33
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • M. Smoot, K. Ono, J. JRuscheinski, P.-L. Wang, and T. Ideker Cytoscape 2.8: new features for data integration and network visualization Bioinformatics 27 2011 431 432
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.1    Ono, K.2    Jruscheinski, J.3    Wang, P.-L.4    Ideker, T.5
  • 34
    • 64749102604 scopus 로고    scopus 로고
    • A general pipeline for quality and statistical assessment of protein interaction data using R and Bioconductor
    • T. Chiang, and D. Scholtens A general pipeline for quality and statistical assessment of protein interaction data using R and Bioconductor Nat. Protoc. 4 2009 535 546
    • (2009) Nat. Protoc. , vol.4 , pp. 535-546
    • Chiang, T.1    Scholtens, D.2
  • 39
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • I. Xenarios, L. Salwínski, X.J. Duan, P. Higney, S.M. Kim, and D. Eisenberg DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions Nucleic Acids Res. 30 2002 303 305
    • (2002) Nucleic Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwínski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6
  • 40
    • 18744376914 scopus 로고    scopus 로고
    • Online predicted human interaction database
    • K.R. Brown, and I. Jurisica Online predicted human interaction database Bioinformatics 21 2005 2076 2082
    • (2005) Bioinformatics , vol.21 , pp. 2076-2082
    • Brown, K.R.1    Jurisica, I.2
  • 42
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • UniProt Consortium Reorganizing the protein space at the Universal Protein Resource (UniProt) Nucleic Acids Res. 40 2012 d71 d75
    • (2012) Nucleic Acids Res. , vol.40
    • Consortium, U.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.