메뉴 건너뛰기




Volumn 3, Issue , 2013, Pages

Computational optimisation of targeted DNA sequencing for cancer detection

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84890250764     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep03309     Document Type: Article
Times cited : (22)

References (34)
  • 1
    • 79251635938 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma
    • doi:10.1038/ nature09639
    • Varela, I. et al. Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature 469, 539-542, doi:10.1038/ nature09639 (2011).
    • (2011) Nature , vol.469 , pp. 539-542
    • Varela, I.1
  • 2
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • The Cancer Genome Atlas Research, N. doi:10.1038/nature10166
    • The Cancer Genome Atlas Research, N. Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615, doi:10.1038/nature10166 (2011).
    • (2011) Nature , vol.474 , pp. 609-615
  • 3
    • 84862976633 scopus 로고    scopus 로고
    • Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators
    • doi:10.1038/ng.2291
    • Fujimoto, A. et al.Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Nat. Genet. 44, 760-764, doi:10.1038/ng.2291 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 760-764
    • Fujimoto, A.1
  • 4
    • 79951494668 scopus 로고    scopus 로고
    • Initial genome sequencing and analysis of multiple myeloma
    • doi:10.1038/nature09837
    • Chapman, M. A. et al. Initial genome sequencing and analysis of multiple myeloma. Nature 471, 467-472, doi:10.1038/nature09837 (2011).
    • (2011) Nature , vol.471 , pp. 467-472
    • Chapman, M.A.1
  • 5
    • 84870599966 scopus 로고    scopus 로고
    • Functional impact bias reveals cancer drivers
    • doi:10.1093/nar/gks743
    • Gonzalez-Perez, A. & Lopez-Bigas, N. Functional impact bias reveals cancer drivers. Nucleic Acids Res. 40, e169-e169, doi:10.1093/nar/gks743 (2012).
    • (2012) Nucleic Acids Res. 40 , vol.40
    • Gonzalez-Perez, A.1    Lopez-Bigas, N.2
  • 6
    • 84883805322 scopus 로고    scopus 로고
    • Antagonistic functional duality of cancer genes
    • doi:10.1016/j.gene.2013.07.047
    • Stepanenko, A. A., Vassetzky, Y. S. & Kavsan, V. M. Antagonistic functional duality of cancer genes. Gene doi:10.1016/j.gene.2013.07.047 (2013).
    • (2013) Gene
    • Stepanenko, A.A.1    Vassetzky, Y.S.2    Kavsan, V.M.3
  • 7
    • 84863393080 scopus 로고    scopus 로고
    • Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
    • doi:10.1056/ NEJMoa1113205
    • Gerlinger, M. et al. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Engl. J. Med. 366, 883-892, doi:10.1056/ NEJMoa1113205 (2012).
    • (2012) N. Engl. J. Med. , vol.366 , pp. 883-892
    • Gerlinger, M.1
  • 8
    • 84856013431 scopus 로고    scopus 로고
    • Clonal evolution in cancer
    • doi:10.1038/nature10762
    • Greaves, M. & Maley, C. C. Clonal evolution in cancer. Nature 481, 306-313, doi:10.1038/nature10762 (2012).
    • (2012) Nature , vol.481 , pp. 306-313
    • Greaves, M.1    Maley, C.C.2
  • 9
    • 84874102335 scopus 로고    scopus 로고
    • Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
    • doi:10.1016/j.cell.2013.01.019
    • Landau, Dan A. et al. Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia. Cell 152, 714-726, doi:10.1016/j.cell.2013.01.019 (2013).
    • (2013) Cell , vol.152 , pp. 714-726
    • Landau Dan, A.1
  • 10
    • 84861550476 scopus 로고    scopus 로고
    • The life history of 21 breast cancers
    • doi:10.1016/j.cell.2012.04.023
    • Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007, doi:10.1016/j.cell.2012.04.023 (2012).
    • (2012) Cell , vol.149 , pp. 994-1007
    • Nik-Zainal, S.1
  • 11
    • 77958014613 scopus 로고    scopus 로고
    • How Darwinian models inform therapeutic failure initiated by clonal heterogeneity in cancer medicine
    • doi:10.1038/sj.bjc.6605912
    • Gerlinger, M. & Swanton, C. How Darwinian models inform therapeutic failure initiated by clonal heterogeneity in cancer medicine. Br. J. Cancer 103, 1139-1143, doi:10.1038/sj.bjc.6605912 (2010).
    • (2010) Br. J. Cancer , vol.103 , pp. 1139-1143
    • Gerlinger, M.1    Swanton, C.2
  • 12
    • 84880117116 scopus 로고    scopus 로고
    • Parallel evolution of tumour subclones mimics diversity between tumours
    • doi:10.1002/path.4214
    • Martinez, P. et al. Parallel evolution of tumour subclones mimics diversity between tumours. J. Pathol. 230, 356-364, doi:10.1002/path.4214 (2013).
    • (2013) J. Pathol. , vol.230 , pp. 356-364
    • Martinez, P.1
  • 13
    • 80054742079 scopus 로고    scopus 로고
    • Plasma nucleic acid analysis by massively parallel sequencing: Pathological insights and diagnostic implications
    • doi:10.1002/path.2960
    • Dennis Lo, Y. & Chiu, R. W. Plasma nucleic acid analysis by massively parallel sequencing: pathological insights and diagnostic implications. J. Pathol. 225, 318-323, doi:10.1002/path.2960 (2011).
    • (2011) J. Pathol. , vol.225 , pp. 318-323
    • Dennis Lo, Y.1    Chiu, R.W.2
  • 14
    • 84875520648 scopus 로고    scopus 로고
    • Analysis of circulating tumor DNA to monitor metastatic breast cancer
    • doi:10.1056/NEJMoa1213261
    • Dawson, S.-J. et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N. Engl. J. Med. 368, 1199-1209, doi:10.1056/ NEJMoa1213261 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 1199-1209
    • Dawson, S.-J.1
  • 15
    • 84861746437 scopus 로고    scopus 로고
    • Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA
    • doi:10.1126/scitranslmed.3003726
    • Forshew, T. et al. Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Sci. Transl. Med. 4, 136ra168-136ra168, doi:10.1126/scitranslmed.3003726 (2012).
    • (2012) Sci. Transl. Med. , vol.4
    • Forshew, T.1
  • 16
    • 84877579861 scopus 로고    scopus 로고
    • Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
    • doi:10.1038/nature12065
    • Murtaza, M. et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature doi:10.1038/nature12065 (2013).
    • (2013) Nature
    • Murtaza, M.1
  • 19
    • 84863000299 scopus 로고    scopus 로고
    • The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
    • doi:10.1038/nature11219
    • Diaz, L. A. et al. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature 486, 537-540, doi:10.1038/nature11219 (2012).
    • (2012) Nature , vol.486 , pp. 537-540
    • Diaz, L.A.1
  • 20
    • 84862999938 scopus 로고    scopus 로고
    • Emergence of KRAS mutations and acquired resistance to anti- EGFR therapy in colorectal cancer
    • doi:10.1038/ nature11156
    • Misale, S. et al. Emergence of KRAS mutations and acquired resistance to anti- EGFR therapy in colorectal cancer. Nature 486, 532-536, doi:10.1038/ nature11156 (2012).
    • (2012) Nature , vol.486 , pp. 532-536
    • Misale, S.1
  • 21
    • 84873113736 scopus 로고    scopus 로고
    • Quantitation of cell-free DNA and RNA in plasma during tumor progression in rats
    • doi:10.1186/1476-4598-12-8
    • Garc?a-Olmo, D. C., Picazo, M. G., Toboso, I., Asensio, A. I. & Garc?a-Olmo, D. Quantitation of cell-free DNA and RNA in plasma during tumor progression in rats. Mol. Cancer 12, 8-8, doi:10.1186/1476-4598-12-8 (2013).
    • (2013) Mol. Cancer , vol.12 , pp. 8-8
    • Garca-Olmo, D.C.1    Picazo, M.G.2    Toboso, I.3    Asensio, A.I.4    Garca-Olmo, D.5
  • 22
    • 84868682387 scopus 로고    scopus 로고
    • Multi-purpose utility of circulating plasma DNA testing in patients with advanced cancers
    • doi:10.1371/ journal.pone.0047020
    • Perkins, G. et al. Multi-purpose utility of circulating plasma DNA testing in patients with advanced cancers. PLoS One 7, e47020-e47020, doi:10.1371/ journal.pone.0047020 (2012).
    • (2012) PLoS One , vol.7
    • Perkins, G.1
  • 23
    • 84878734930 scopus 로고    scopus 로고
    • Circulating cell-free dna from colorectal cancer patients may reveal high kras or braf mutation load
    • Mouliere, F. et al. Circulating Cell-Free DNA from Colorectal Cancer Patients May Reveal High KRAS or BRAF Mutation Load. Transl. Oncol. 6, 319-328 (2013).
    • (2013) Transl. Oncol. , vol.6 , pp. 319-328
    • Mouliere, F.1
  • 24
    • 84885092663 scopus 로고    scopus 로고
    • Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling
    • doi:10.1002/path.4230
    • Bashashati, A. et al. Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling. J. Pathol. doi:10.1002/path.4230 (2013).
    • (2013) J. Pathol.
    • Bashashati, A.1
  • 25
    • 84873186179 scopus 로고    scopus 로고
    • Deciphering signatures of mutational processes operative in human cancer
    • doi:10.1016/j.celrep.2012.12.008
    • Alexandrov, L. B., Nik-Zainal, S., Wedge, D. C., Campbell, P. J. & Stratton, M. R. Deciphering signatures of mutational processes operative in human cancer. Cell Rep. 3, 246-259, doi:10.1016/j.celrep.2012.12.008 (2013).
    • (2013) Cell Rep. , vol.3 , pp. 246-259
    • Alexandrov, L.B.1    Nik-Zainal, S.2    Wedge, D.C.3    Campbell, P.J.4    Stratton, M.R.5
  • 26
    • 78049485263 scopus 로고    scopus 로고
    • Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
    • doi:10.1002/ijc.25516
    • Ferlay, J. et al. Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int. J. Cancer 127, 2893-2917, doi:10.1002/ijc.25516 (2010).
    • (2010) Int. J. Cancer , vol.127 , pp. 2893-2917
    • Ferlay, J.1
  • 27
    • 0034693757 scopus 로고    scopus 로고
    • The RET proto-oncogene in human cancers
    • doi:10.1038/sj.onc.1203857
    • Jhiang, S. M. The RET proto-oncogene in human cancers. Oncogene 19, 5590-5597, doi:10.1038/sj.onc.1203857 (2000).
    • (2000) Oncogene , vol.19 , pp. 5590-5597
    • Jhiang, S.M.1
  • 28
    • 84880967722 scopus 로고    scopus 로고
    • Integrated molecular analysis of clear-cell renal cell carcinoma
    • doi:10.1038/ng.2699
    • Sato, Y. et al. Integrated molecular analysis of clear-cell renal cell carcinoma. Nat. Genet. 45, 860-867, doi:10.1038/ng.2699 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 860-867
    • Sato, Y.1
  • 29
    • 0035496607 scopus 로고    scopus 로고
    • Rescuing the function of mutant p53
    • Bullock, A. N. & Fersht, A. R. Rescuing the function of mutant p53. Nat. Rev. Cancer 1, 68-76, doi:10.1038/35094077 (2001). (Pubitemid 33741882)
    • (2001) Nature Reviews Cancer , vol.1 , Issue.1 , pp. 68-76
    • Bullock, A.N.1    Fersht, A.R.2
  • 30
    • 84875490185 scopus 로고    scopus 로고
    • Cancer genome landscapes
    • doi:10.1126/science.1235122
    • Vogelstein, B. et al. Cancer genome landscapes. Science 339, 1546-1558, doi:10.1126/science.1235122 (2013).
    • (2013) Science , vol.339 , pp. 1546-1558
    • Vogelstein, B.1
  • 31
    • 79959353421 scopus 로고    scopus 로고
    • Detection and quantification of rare mutations with massively parallel sequencing
    • doi:10.1073/pnas.1105422108
    • Kinde, I., Wu, J., Papadopoulos, N., Kinzler, K. W. & Vogelstein, B. Detection and quantification of rare mutations with massively parallel sequencing. Proc. Natl. Acad. Sci. U. S. A. 108, 9530-9535, doi:10.1073/pnas. 1105422108 (2011).
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 9530-9535
    • Kinde, I.1    Wu, J.2    Papadopoulos, N.3    Kinzler, K.W.4    Vogelstein, B.5
  • 32
    • 84877108149 scopus 로고    scopus 로고
    • Single molecule molecular inversion probes for targeted, high-accuracy detection of lowfrequency variation
    • doi:10.1101/gr.147686.112
    • Hiatt, J. B., Pritchard, C. C., Salipante, S. J., O'Roak, B. J. & Shendure, J. Single molecule molecular inversion probes for targeted, high-accuracy detection of lowfrequency variation. Genome Res. 23, 843-854, doi:10.1101/gr.147686.112 (2013).
    • (2013) Genome Res. , vol.23 , pp. 843-854
    • Hiatt, J.B.1    Pritchard, C.C.2    Salipante, S.J.3    O'roak, B.J.4    Shendure, J.5
  • 33
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • doi:10.1093/nar/gkq603
    • Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164-e164, doi:10.1093/nar/gkq603 (2010).
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.