-
1
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma multiforme
-
Parsons DW, Jones S, Zhang X, et al,. An integrated genomic analysis of human glioblastoma multiforme. Science 2008; 321: 1807-1812.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.3
-
2
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T, Jones S, Wood LD, et al,. The consensus coding sequences of human breast and colorectal cancers. Science 2006; 314: 268-274.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
-
3
-
-
72949119310
-
Complex landscapes of somatic rearrangement in human breast cancer genomes
-
Stephens PJ, McBride DJ, Lin ML, et al,. Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature 2009; 462: 1005-1010.
-
(2009)
Nature
, vol.462
, pp. 1005-1010
-
-
Stephens, P.J.1
McBride, D.J.2
Lin, M.L.3
-
4
-
-
79251635938
-
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma
-
Varela I, Tarpey P, Raine K, et al,. Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature 2011; 469: 539-542.
-
(2011)
Nature
, vol.469
, pp. 539-542
-
-
Varela, I.1
Tarpey, P.2
Raine, K.3
-
5
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
Bell D, Berchuck A, Birrer M, et al,. Integrated genomic analyses of ovarian carcinoma. Nature 2011; 474: 609-615.
-
(2011)
Nature
, vol.474
, pp. 609-615
-
-
Bell, D.1
Berchuck, A.2
Birrer, M.3
-
6
-
-
84862776906
-
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
-
Ding L, Ley TJ, Larson DE, et al,. Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature 2012; 481: 506-510.
-
(2012)
Nature
, vol.481
, pp. 506-510
-
-
Ding, L.1
Ley, T.J.2
Larson, D.E.3
-
7
-
-
78751644099
-
Genetic variegation of clonal architecture and propagating cells in leukaemia
-
Anderson K, Lutz C, van Delft FW, et al,. Genetic variegation of clonal architecture and propagating cells in leukaemia. Nature 2011; 469: 356-361.
-
(2011)
Nature
, vol.469
, pp. 356-361
-
-
Anderson, K.1
Lutz, C.2
Van Delft, F.W.3
-
8
-
-
84862776537
-
Clonal selection drives genetic divergence of metastatic medulloblastoma
-
Wu X, Northcott PA, Dubuc A, et al,. Clonal selection drives genetic divergence of metastatic medulloblastoma. Nature 2012; 482: 529-533.
-
(2012)
Nature
, vol.482
, pp. 529-533
-
-
Wu, X.1
Northcott, P.A.2
Dubuc, A.3
-
9
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin N, Kendall J, Troge J, et al,. Tumour evolution inferred by single-cell sequencing. Nature 2011; 472: 90-94.
-
(2011)
Nature
, vol.472
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
-
10
-
-
74949101897
-
Inferring tumor progression from genomic heterogeneity
-
Navin N, Krasnitz A, Rodgers L, et al,. Inferring tumor progression from genomic heterogeneity. Genome Res 2010; 20: 68-80.
-
(2010)
Genome Res
, vol.20
, pp. 68-80
-
-
Navin, N.1
Krasnitz, A.2
Rodgers, L.3
-
11
-
-
70349969478
-
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
-
Shah SP, Morin RD, Khattra J, et al,. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature 2009; 461: 809-813.
-
(2009)
Nature
, vol.461
, pp. 809-813
-
-
Shah, S.P.1
Morin, R.D.2
Khattra, J.3
-
12
-
-
84862526929
-
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
-
Shah SP, Roth A, Goya R, et al,. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 2012; 486: 395-399.
-
(2012)
Nature
, vol.486
, pp. 395-399
-
-
Shah, S.P.1
Roth, A.2
Goya, R.3
-
13
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Nik-Zainal S, Alexandrov LB, Wedge DC, et al,. Mutational processes molding the genomes of 21 breast cancers. Cell 2012; 149: 979-993.
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
-
14
-
-
84861550476
-
The life history of 21 breast cancers
-
Nik-Zainal S, Van Loo P, Wedge DC, et al,. The life history of 21 breast cancers. Cell 2012; 149: 994-1007.
-
(2012)
Cell
, vol.149
, pp. 994-1007
-
-
Nik-Zainal, S.1
Van Loo, P.2
Wedge, D.C.3
-
15
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger M, Rowan AJ, Horswell S, et al,. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 2012; 366: 883-892.
-
(2012)
N Engl J Med
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
Rowan, A.J.2
Horswell, S.3
-
16
-
-
70449185514
-
Histological grading and prognosis in breast cancer; A study of 1409 cases of which 359 have been followed for 15 years
-
Bloom HJ, Richardson WW,. Histological grading and prognosis in breast cancer; a study of 1409 cases of which 359 have been followed for 15 years. Br J Cancer 1957; 11: 359-377.
-
(1957)
Br J Cancer
, vol.11
, pp. 359-377
-
-
Bloom, H.J.1
Richardson, W.W.2
-
17
-
-
46349086833
-
Association between chromosomal instability and prognosis in colorectal cancer: A meta-analysis
-
Walther A, Houlston R, Tomlinson I,. Association between chromosomal instability and prognosis in colorectal cancer: a meta-analysis. Gut 2008; 57: 941-950.
-
(2008)
Gut
, vol.57
, pp. 941-950
-
-
Walther, A.1
Houlston, R.2
Tomlinson, I.3
-
18
-
-
33748286796
-
A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers
-
Carter S, Eklund A, Kohane I, et al,. A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers. Nat Genet 2006; 38: 1043-1048.
-
(2006)
Nat Genet
, vol.38
, pp. 1043-1048
-
-
Carter, S.1
Eklund, A.2
Kohane, I.3
-
19
-
-
84861851519
-
Cancer chromosomal instability: Therapeutic and diagnostic challenges. 'Exploring aneuploidy: The significance of chromosomal imbalance' review series
-
McGranahan N, Burrell RA, Endesfelder D, et al,. Cancer chromosomal instability: therapeutic and diagnostic challenges. 'Exploring aneuploidy: the significance of chromosomal imbalance' review series. EMBO Rep 2012; 13: 528-538.
-
(2012)
EMBO Rep
, vol.13
, pp. 528-538
-
-
McGranahan, N.1
Burrell, R.A.2
Endesfelder, D.3
-
20
-
-
80053536086
-
Relationship of extreme chromosomal instability with long-term survival in a retrospective analysis of primary breast cancer
-
Roylance R, Endesfelder D, Gorman P, et al,. Relationship of extreme chromosomal instability with long-term survival in a retrospective analysis of primary breast cancer. Cancer Epidemiol Biomarkers Prev 2011; 20: 2183-2194.
-
(2011)
Cancer Epidemiol Biomarkers Prev
, vol.20
, pp. 2183-2194
-
-
Roylance, R.1
Endesfelder, D.2
Gorman, P.3
-
21
-
-
33645396945
-
Genetic clonal diversity predicts progression to esophageal adenocarcinoma
-
Maley CC, Galipeau PC, Finley JC, et al,. Genetic clonal diversity predicts progression to esophageal adenocarcinoma. Nat Genet 2006; 38: 468-473.
-
(2006)
Nat Genet
, vol.38
, pp. 468-473
-
-
Maley, C.C.1
Galipeau, P.C.2
Finley, J.C.3
-
22
-
-
77958014613
-
How Darwinian models inform therapeutic failure initiated by clonal heterogeneity in cancer medicine
-
Gerlinger M, Swanton C,. How Darwinian models inform therapeutic failure initiated by clonal heterogeneity in cancer medicine. Br J Cancer 2010; 103: 1139-1143.
-
(2010)
Br J Cancer
, vol.103
, pp. 1139-1143
-
-
Gerlinger, M.1
Swanton, C.2
-
23
-
-
84863011443
-
Pretreatment epidermal growth factor receptor (EGFR) T790M mutation predicts shorter EGFR tyrosine kinase inhibitor response duration in patients with non-small-cell lung cancer
-
Su KY, Chen HY, Li KC, et al,. Pretreatment epidermal growth factor receptor (EGFR) T790M mutation predicts shorter EGFR tyrosine kinase inhibitor response duration in patients with non-small-cell lung cancer. J Clin Oncol 2012; 30: 433-440.
-
(2012)
J Clin Oncol
, vol.30
, pp. 433-440
-
-
Su, K.Y.1
Chen, H.Y.2
Li, K.C.3
-
24
-
-
84861532638
-
Clonal competition with alternating dominance in multiple myeloma
-
Keats JJ, Chesi M, Egan JB, et al,. Clonal competition with alternating dominance in multiple myeloma. Blood 2012; 120: 1067-1076.
-
(2012)
Blood
, vol.120
, pp. 1067-1076
-
-
Keats, J.J.1
Chesi, M.2
Egan, J.B.3
-
25
-
-
84859125350
-
Intratumour heterogeneity: Seeing the wood for the trees
-
127ps10.
-
Yap T, Gerlinger M, Futreal A, et al,. Intratumour heterogeneity: seeing the wood for the trees. Sci Translat Med 2012; 4: 127ps10.
-
(2012)
Sci Translat Med
, vol.4
-
-
Yap, T.1
Gerlinger, M.2
Futreal, A.3
-
26
-
-
69949167276
-
A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6
-
Bengtsson H, Wirapati P, Speed TP,. A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. Bioinformatics (Oxford, England) 2009; 25: 2149-2156.
-
(2009)
Bioinformatics (Oxford, England)
, vol.25
, pp. 2149-2156
-
-
Bengtsson, H.1
Wirapati, P.2
Speed, T.P.3
-
27
-
-
77951996044
-
TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays
-
Bengtsson H, Neuvial P, Speed T,. TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays. BMC Bioinformat 2010; 11: 245.
-
(2010)
BMC Bioinformat
, vol.11
, pp. 245
-
-
Bengtsson, H.1
Neuvial, P.2
Speed, T.3
-
28
-
-
84864023860
-
CalMaTe: A method and software to improve allele-specific copy number of SNP arrays for downstream segmentation
-
Ortiz-Estevez M, Aramburu A, Bengtsson H, et al,. CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation. Bioinformatics 2012; 28: 1793-1794.
-
(2012)
Bioinformatics
, vol.28
, pp. 1793-1794
-
-
Ortiz-Estevez, M.1
Aramburu, A.2
Bengtsson, H.3
-
31
-
-
84874362586
-
Replication stress links structural and numerical cancer chromosomal instability
-
Burell RA, McClelland SE, Endesfelder D, et al,. Replication stress links structural and numerical cancer chromosomal instability. Nature 2013; 494: 492-496.
-
(2013)
Nature
, vol.494
, pp. 492-496
-
-
Burell, R.A.1
McClelland, S.E.2
Endesfelder, D.3
-
32
-
-
33745612095
-
Pvclust: An R package for assessing the uncertainty in hierarchical clustering
-
Suzuki R, Shimodaira H,. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 2006; 22: 1540-1542.
-
(2006)
Bioinformatics
, vol.22
, pp. 1540-1542
-
-
Suzuki, R.1
Shimodaira, H.2
-
34
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, et al,. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
-
35
-
-
66349100709
-
Patterns of gene expression and copy-number alterations in von Hippel-Lindau disease-associated and sporadic clear cell carcinoma of the kidney
-
Beroukhim R, Brunet J-P, Di Napoli A, et al,. Patterns of gene expression and copy-number alterations in von Hippel-Lindau disease-associated and sporadic clear cell carcinoma of the kidney. Cancer Res 2009; 69: 4674-4681.
-
(2009)
Cancer Res
, vol.69
, pp. 4674-4681
-
-
Beroukhim, R.1
Brunet, J.-P.2
Di Napoli, A.3
-
36
-
-
36248980204
-
Characterizing the cancer genome in lung adenocarcinoma
-
Weir BA, Woo MS, Getz G, et al,. Characterizing the cancer genome in lung adenocarcinoma. Nature 2007; 450: 893-898.
-
(2007)
Nature
, vol.450
, pp. 893-898
-
-
Weir, B.A.1
Woo, M.S.2
Getz, G.3
-
37
-
-
79952233635
-
Chromosomal instability confers intrinsic multidrug resistance
-
Lee A, Endesfelder D, Rowan A, et al,. Chromosomal instability confers intrinsic multidrug resistance. Cancer Res 2011; 71: 1858-1870.
-
(2011)
Cancer Res
, vol.71
, pp. 1858-1870
-
-
Lee, A.1
Endesfelder, D.2
Rowan, A.3
-
38
-
-
33947385421
-
Intratumor genomic heterogeneity in breast cancer with clonal divergence between primary carcinomas and lymph node metastases
-
Torres L, Ribeiro F, Pandis N, et al,. Intratumor genomic heterogeneity in breast cancer with clonal divergence between primary carcinomas and lymph node metastases. Breast Cancer Res Treat 2007; 102: 143-155.
-
(2007)
Breast Cancer Res Treat
, vol.102
, pp. 143-155
-
-
Torres, L.1
Ribeiro, F.2
Pandis, N.3
-
39
-
-
84874102335
-
Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
-
Landau DA, Carter SL, Stojanov P, et al,. Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell 2013; 152: 714-726.
-
(2013)
Cell
, vol.152
, pp. 714-726
-
-
Landau, D.A.1
Carter, S.L.2
Stojanov, P.3
-
40
-
-
78349258143
-
Chromosome 9p deletions identify an aggressive phenotype of clear cell renal cell carcinoma
-
La Rochelle J, Klatte T, Dastane A, et al,. Chromosome 9p deletions identify an aggressive phenotype of clear cell renal cell carcinoma. Cancer 2010; 116: 4696-4702.
-
(2010)
Cancer
, vol.116
, pp. 4696-4702
-
-
La Rochelle, J.1
Klatte, T.2
Dastane, A.3
|