-
1
-
-
78649716727
-
Manufacturing molecules through metabolic engineering
-
Keasling JD. Manufacturing molecules through metabolic engineering. Science. 2010;330:1355.
-
(2010)
Science
, vol.330
, pp. 1355
-
-
Keasling, J.D.1
-
2
-
-
53749085229
-
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
-
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY. A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol. 2008;26:1155-1160.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1155-1160
-
-
Herrgård, M.J.1
Swainston, N.2
Dobson, P.3
Dunn, W.B.4
Arga, K.Y.5
-
3
-
-
4344571061
-
Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production
-
Çakir T, Arga KY, Altintas MM, Ülgen, KÖ. Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production Process Biochem. 2004;39:2097-2108.
-
(2004)
Process Biochem.
, vol.39
, pp. 2097-2108
-
-
Çakir, T.1
Arga, K.Y.2
Altintas, M.M.3
Ülgen, K.O.4
-
4
-
-
38349151554
-
Metabolic flux analysis and metabolic engineering of microorganisms
-
Kim HU, Kim TY, Lee SY. Metabolic flux analysis and metabolic engineering of microorganisms. Mol Biosyst. 2008;4:113-120.
-
(2008)
Mol Biosyst
, vol.4
, pp. 113-120
-
-
Kim, H.U.1
Kim, T.Y.2
Lee, S.Y.3
-
5
-
-
84858002174
-
Exploring the gap between dynamic and constraint-based models of metabolism
-
Machado D, Costa R, Ferreira E, Rocha I, Tidor B. Exploring the gap between dynamic and constraint-based models of metabolism. Metab Eng. 2012;14:112-119.
-
(2012)
Metab Eng
, vol.14
, pp. 112-119
-
-
Machado, D.1
Costa, R.2
Ferreira, E.3
Rocha, I.4
Tidor, B.5
-
6
-
-
37549011323
-
Comparison of metabolite production capability indices generated by network analysis methods
-
Ishii K, Nakamura S, Morohashi M, Sugimoto M, Ohashi Y, Kikuchi S, Tomita M. Comparison of metabolite production capability indices generated by network analysis methods. Biosystems. 2008;91:166-170.
-
(2008)
Biosystems
, vol.91
, pp. 166-170
-
-
Ishii, K.1
Nakamura, S.2
Morohashi, M.3
Sugimoto, M.4
Ohashi, Y.5
Kikuchi, S.6
Tomita, M.7
-
7
-
-
84864955882
-
Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches
-
Jang YS, Park JM, Choi S, Choi YJ, Seung DY, Cho JH, Lee SY. Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches. Biotechnol Adv. 2011;30:989-1000.
-
(2011)
Biotechnol Adv
, vol.30
, pp. 989-1000
-
-
Jang, Y.S.1
Park, J.M.2
Choi, S.3
Choi, Y.J.4
Seung, D.Y.5
Cho, J.H.6
Lee, S.Y.7
-
8
-
-
84867209510
-
Systems and synthetic metabolic engineering for amino acid production-the heartbeat of industrial strain development
-
Becker J, Wittmann C. Systems and synthetic metabolic engineering for amino acid production-the heartbeat of industrial strain development. Curr Opin Biotechnol. 2012;23:718-726.
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 718-726
-
-
Becker, J.1
Wittmann, C.2
-
9
-
-
62049085339
-
Drug targets for tumorigenesis: insights from structural analysis of EGFR signaling network
-
Tekir SD, Arga KY, Ülgen KÖ. Drug targets for tumorigenesis: insights from structural analysis of EGFR signaling network. J Biomed Inform. 2009;42:228-236.
-
(2009)
J Biomed Inform
, vol.42
, pp. 228-236
-
-
Tekir, S.D.1
Arga, K.Y.2
Ülgen, K.O.3
-
10
-
-
84864932596
-
Fifteen years of large scale metabolic modeling of yeast: developments and impacts
-
Osterlund T, Nookaew I, Nielsen J. Fifteen years of large scale metabolic modeling of yeast: developments and impacts. Biotechnol Adv. 2011;30:979-988.
-
(2011)
Biotechnol Adv
, vol.30
, pp. 979-988
-
-
Osterlund, T.1
Nookaew, I.2
Nielsen, J.3
-
12
-
-
69749110170
-
Levan: applications and perspectives
-
Rehm B, editor, Norkfolk: Caister Academic Press;
-
Kang SA, Jang KH, Seo JW, Kim KH, Kim YH, Rairakhwada D, Seo MY, Lee JO, Ha SD, Kim CH, Rhee S-K. Levan: applications and perspectives. In: Rehm B, editor. Microbial Production of Biopolymers and Polymer Precursors: Applications and Perspectives. Norkfolk: Caister Academic Press; 2009:145-161.
-
(2009)
Microbial Production of Biopolymers and Polymer Precursors: Applications and Perspectives
, pp. 145-161
-
-
Kang, S.A.1
Jang, K.H.2
Seo, J.W.3
Kim, K.H.4
Kim, Y.H.5
Rairakhwada, D.6
Seo, M.Y.7
Lee, J.O.8
Ha, S.D.9
Kim, C.H.10
Rhee, S.-K.11
-
13
-
-
84897342131
-
Extremophiles as sources of exopolysaccharides
-
Columbus E, editor, New York: Nova Science Publishers;
-
Kazak H, Toksoy Öner E, Dekker RFH. Extremophiles as sources of exopolysaccharides. In: Columbus E, editor. Handbook of Carbohydrate Polymers: Development, Properties and Applications. New York: Nova Science Publishers; 2010:605-619.
-
(2010)
Handbook of Carbohydrate Polymers: Development, Properties and Applications
, pp. 605-619
-
-
Kazak, H.1
Toksoy Öner, E.2
Dekker, R.F.H.3
-
14
-
-
84871415297
-
High expression level of levansucrase from Bacillus licheniformis RN-01 and synthesis of levan nanoparticles
-
Nakaponga S, Pichyangkuraa R, Ito K, Iizukab M, Pongsawasdia P. High expression level of levansucrase from Bacillus licheniformis RN-01 and synthesis of levan nanoparticles. Int J Biol Macromol. 2013;54:30-36.
-
(2013)
Int J Biol Macromol
, vol.54
, pp. 30-36
-
-
Nakaponga, S.1
Pichyangkuraa, R.2
Ito, K.3
Iizukab, M.4
Pongsawasdia, P.5
-
15
-
-
70349882092
-
Medium optimization and structural characterization of exopolysaccharides from endophytic bacterium Paenibacillus polymyxa EJS-3
-
Liu J, Luo J, Ye H, Sun Y, Lu Z, Zeng X. Medium optimization and structural characterization of exopolysaccharides from endophytic bacterium Paenibacillus polymyxa EJS-3. Carbohydr Polym. 2010;79:206-213.
-
(2010)
Carbohydr Polym
, vol.79
, pp. 206-213
-
-
Liu, J.1
Luo, J.2
Ye, H.3
Sun, Y.4
Lu, Z.5
Zeng, X.6
-
16
-
-
84866124047
-
Microbial levan from Pseudomonas fluorescens: characterization and medium optimization for enhanced production
-
Jathore NR, Bule MV, Tilay AV, Annapure US. Microbial levan from Pseudomonas fluorescens: characterization and medium optimization for enhanced production. Food Sci Biotechnol. 2013;4:1045-1053.
-
(2013)
Food Sci Biotechnol
, vol.4
, pp. 1045-1053
-
-
Jathore, N.R.1
Bule, M.V.2
Tilay, A.V.3
Annapure, U.S.4
-
17
-
-
79960345590
-
Advances in bacterial exopolysaccharides: from production to biotechnological applications
-
Freitas F, Alves VD, Reis MA. Advances in bacterial exopolysaccharides: from production to biotechnological applications. Trends Biotechnol. 2011;29:388-398.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 388-398
-
-
Freitas, F.1
Alves, V.D.2
Reis, M.A.3
-
18
-
-
78951484450
-
Levan-based nanocarrier system for peptide and protein drug delivery: optimization and influence of experimental parameters on the nanoparticle characteristic
-
Sezer AD, Kazak H, Toksoy Oner E, Akbuǧa J. Levan-based nanocarrier system for peptide and protein drug delivery: optimization and influence of experimental parameters on the nanoparticle characteristic. Carbohydr Polym. 2011;84:358-363.
-
(2011)
Carbohydr Polym
, vol.84
, pp. 358-363
-
-
Sezer, A.D.1
Kazak, H.2
Toksoy Oner, E.3
Akbuǧa, J.4
-
19
-
-
79952573239
-
Molasses as fermentation substrate for levan production by Halomonas sp
-
Kucukasik, F, Kazak H, Guney D, Finore I, Poli A, Yenigun O, Nicolaus B, Toksoy Oner E. Molasses as fermentation substrate for levan production by Halomonas sp. Appl Microbiol Biotechnol. 2011;89:1729-1740.
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, pp. 1729-1740
-
-
Kucukasik, F.1
Kazak, H.2
Guney, D.3
Finore, I.4
Poli, A.5
Yenigun, O.6
Nicolaus, B.7
Toksoy Oner, E.8
-
20
-
-
84872458399
-
Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Camalti Saltern Area, Turkey
-
Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D. Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Camalti Saltern Area, Turkey. Int J Syst Evol Microbiol. 2013;63:10-18.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 10-18
-
-
Poli, A.1
Nicolaus, B.2
Denizci, A.A.3
Yavuzturk, B.4
Kazan, D.5
-
21
-
-
69749126416
-
High level synthesis of levan by a novel Halomonas species growing on defined media
-
Poli A, Kazak H, GürleyendaǍ B, Tommonaro G, Pieretti G, Toksoy Öner E, and Nicolaus B. High level synthesis of levan by a novel Halomonas species growing on defined media. Carbohydr Polym. 2009;78:651-657.
-
(2009)
Carbohydr Polym
, vol.78
, pp. 651-657
-
-
Poli, A.1
Kazak, H.2
GürleyendaǍ, B.3
Tommonaro, G.4
Pieretti, G.5
Toksoy Öner, E.6
Nicolaus, B.7
-
22
-
-
78650689418
-
Flocculating performances of exopolysaccharides produced by a halophilic bacterial strain cultivated on agro-industrial waste
-
Sam S, Kucukasik F, Yenigun O, Nicolaus B, Toksoy Öner E, Yukselen MA. Flocculating performances of exopolysaccharides produced by a halophilic bacterial strain cultivated on agro-industrial waste. Bioresour Technol. 2011;102:1788-1794.
-
(2011)
Bioresour Technol
, vol.102
, pp. 1788-1794
-
-
Sam, S.1
Kucukasik, F.2
Yenigun, O.3
Nicolaus, B.4
Toksoy Öner, E.5
Yukselen, M.A.6
-
23
-
-
79958840900
-
Levan nanostructured thin films by MAPLE assembling
-
Sima F, Mutlu Cansever E, Eroglu MS, Sima Livia E, Serban N, Ristoscu C, Petrescu SM, Toksoy Oner E, Mihailescu IN. Levan nanostructured thin films by MAPLE assembling. Biomacromolecules. 2011;12:2251-2256.
-
(2011)
Biomacromolecules
, vol.12
, pp. 2251-2256
-
-
Sima, F.1
Mutlu Cansever, E.2
Eroglu, M.S.3
Sima Livia, E.4
Serban, N.5
Ristoscu, C.6
Petrescu, S.M.7
Toksoy Oner, E.8
Mihailescu, I.N.9
-
24
-
-
84870924666
-
Combinatorial matrix-assisted pulsed laser evaporation: single-step synthesis of biopolymer compositional gradient thin film assemblies
-
Sima F, Axente E, Sima LE, Tuyel U, Eroglu MS, Serban N, Ristoscu C, Petrescu SM, Toksoy Oner E, Mihailescu IN. Combinatorial matrix-assisted pulsed laser evaporation: single-step synthesis of biopolymer compositional gradient thin film assemblies. Appl Phys Lett. 2012;101:233705.
-
(2012)
Appl Phys Lett
, vol.101
, pp. 233705
-
-
Sima, F.1
Axente, E.2
Sima, L.E.3
Tuyel, U.4
Eroglu, M.S.5
Serban, N.6
Ristoscu, C.7
Petrescu, S.M.8
Toksoy Oner, E.9
Mihailescu, I.N.10
-
25
-
-
77953786532
-
Exopolysaccharides from extremophiles: from fundamentals to biotechnology
-
Nicolaus B, Kambourova M, Toksoy Oner E. Exopolysaccharides from extremophiles: from fundamentals to biotechnology. Environ Technol. 2010;31:1145-1158.
-
(2010)
Environ Technol
, vol.31
, pp. 1145-1158
-
-
Nicolaus, B.1
Kambourova, M.2
Toksoy Oner, E.3
-
26
-
-
78651549430
-
Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043
-
Ates O, Toksoy Oner E, Arga KY. Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043. BMC Syst Biol. 2011;5:12.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 12
-
-
Ates, O.1
Toksoy Oner, E.2
Arga, K.Y.3
-
27
-
-
84890220244
-
-
Computational Biology at ORNL. Available at: accessed on November 8
-
Computational Biology at ORNL. Available at: http://genome.ornl.gov/microbial/csal, (accessed on November 8, 2005).
-
(2005)
-
-
-
28
-
-
84890246156
-
-
DOE Joint Genome Institute. Available at: (accessed on October 14, 2007)
-
DOE Joint Genome Institute. Available at: http://img.jgi.doe.gov/cgi-bin/pub/main.cgi. (accessed on October 14, 2007)
-
-
-
-
29
-
-
0034916345
-
Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174
-
Arahal D, Garcia MT, Vargas C, Canovas D, Nieto JJ, Ventosa A. Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174. Int J Syst Evol Microbiol. 2001;50:1457-1462.
-
(2001)
Int J Syst Evol Microbiol
, vol.50
, pp. 1457-1462
-
-
Arahal, D.1
Garcia, M.T.2
Vargas, C.3
Canovas, D.4
Nieto, J.J.5
Ventosa, A.6
-
30
-
-
23944462637
-
How to be moderately halophilic with broad salt tolerance: clues from the genome of Chromohalobacter salexigens
-
Oren A, Larimer F, Richardson P, Lapidus A, Csonka LN. How to be moderately halophilic with broad salt tolerance: clues from the genome of Chromohalobacter salexigens. Extremophiles. 2005;9:275-279.
-
(2005)
Extremophiles
, vol.9
, pp. 275-279
-
-
Oren, A.1
Larimer, F.2
Richardson, P.3
Lapidus, A.4
Csonka, L.N.5
-
31
-
-
33645123469
-
Ectoines as compatible solutes and carbon and energy sources for the halophilic bacterium Chromohalobacter salexigens
-
Vargas C, Jebbar M, Carrasco R, Blanco C, Calderon MI, Iglesias-Guerra F, Nieto JJ. Ectoines as compatible solutes and carbon and energy sources for the halophilic bacterium Chromohalobacter salexigens. J Appl Microbiol. 2006;100:98-107.
-
(2006)
J Appl Microbiol
, vol.100
, pp. 98-107
-
-
Vargas, C.1
Jebbar, M.2
Carrasco, R.3
Blanco, C.4
Calderon, M.I.5
Iglesias-Guerra, F.6
Nieto, J.J.7
-
32
-
-
33749946901
-
Colorimetric method for determination of sugars and related substances
-
Dubois M, Gilles A, Hamilton JK, Rebers PA, Smith F. Colorimetric method for determination of sugars and related substances. Anal Chem. 1956;28:350-356.
-
(1956)
Anal Chem
, vol.28
, pp. 350-356
-
-
Dubois, M.1
Gilles, A.2
Hamilton, J.K.3
Rebers, P.A.4
Smith, F.5
-
33
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
34
-
-
38549104455
-
Determination of the uronic acid content of plant cell walls using a colorimetric assay
-
Wrolstad RE, editor, New York: Wiley;
-
Melton LD, Smith BG. Determination of the uronic acid content of plant cell walls using a colorimetric assay. In: Wrolstad RE, Acree TE, Decker EA, Penner MH, Reid DS, Schwartz SJ, Shoemaker CF, Smith DM, Sporns P. editor. Current Protocols in Food Analytical Chemistry. New York: Wiley; 2001:735-738.
-
(2001)
Current Protocols in Food Analytical Chemistry
, pp. 735-738
-
-
Melton, L.D.1
Smith, B.G.2
Acree, T.E.3
Decker, E.A.4
Penner, M.H.5
Reid, D.S.6
Schwartz, S.J.7
Shoemaker, C.F.8
Smith, D.M.9
Sporns, P.10
-
35
-
-
0012609432
-
Colorimetric assay of alditols in complex biological samples
-
Sanchez J. Colorimetric assay of alditols in complex biological samples. J Agric Food Chem. 1998;46:157-160.
-
(1998)
J Agric Food Chem
, vol.46
, pp. 157-160
-
-
Sanchez, J.1
-
36
-
-
0030447841
-
Osmoprotectants in Halomonas elongata: high-affinity betaine transport system and choline betaine pathway
-
Canovas D, Vargas C, Csonka LN, Ventosa A, Nieto JJ. Osmoprotectants in Halomonas elongata: high-affinity betaine transport system and choline betaine pathway. J Bacteriol. 1996;178:221-226.
-
(1996)
J Bacteriol
, vol.178
, pp. 221-226
-
-
Canovas, D.1
Vargas, C.2
Csonka, L.N.3
Ventosa, A.4
Nieto, J.J.5
-
37
-
-
52949103355
-
Unravelling the adaptation responses to osmotic and temperature stress in Chromohalobacter salexigens, a bacterium with broad salinity tolerance
-
Vargas C, Argandoña M, Reina-Bueno M, Rodriguez-Moya J, Fernández-Aunión C, Nieto JJ. Unravelling the adaptation responses to osmotic and temperature stress in Chromohalobacter salexigens, a bacterium with broad salinity tolerance. Saline Syst. 2008;4:14.
-
(2008)
Saline Syst
, vol.4
, pp. 14
-
-
Vargas, C.1
Argandoña, M.2
Reina-Bueno, M.3
Rodriguez-Moya, J.4
Fernández-Aunión, C.5
Nieto, J.J.6
-
38
-
-
77953075242
-
Interplay between iron homeostasis and the osmostress response in the halophilic bacterium Chromohalobacter salexigens
-
Argandoña M, Nieto JJ, Iglesias-Guerra F, Calderón MI, García-Estepa R, Vargas C. Interplay between iron homeostasis and the osmostress response in the halophilic bacterium Chromohalobacter salexigens. Appl Environ Microbiol. 2010;76:3575-3589.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3575-3589
-
-
Argandoña, M.1
Nieto, J.J.2
Iglesias-Guerra, F.3
Calderón, M.I.4
García-Estepa, R.5
Vargas, C.6
-
39
-
-
84871857327
-
Molecular network analysis of diseases and drugs in KEGG
-
Mamitsuka H, De Lisi C, Kanehisa M, editor, New York: Humana Press;
-
Kanehisa M. Molecular network analysis of diseases and drugs in KEGG. In: Mamitsuka H, De Lisi C, Kanehisa M, editor. Data Mining for Systems Biology: Methods in Molecular Biology. New York: Humana Press; 2013:263-275.
-
(2013)
Data Mining for Systems Biology: Methods in Molecular Biology
, pp. 263-275
-
-
Kanehisa, M.1
-
40
-
-
77951612556
-
BiGG: a biochemical genetic and genomic knowledgebase of large scale metabolic reconstructions
-
Schellenberger J, Park JO, Conrad TM, Palsson BØ. BiGG: a biochemical genetic and genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics. 2010;11:213.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 213
-
-
Schellenberger, J.1
Park, J.O.2
Conrad, T.M.3
Palsson, B.4
-
41
-
-
84864434718
-
ExPASy: SIB bioinformatics resource portal
-
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro, E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, Moretti S, Mostaguir K, Redaschi N, Rossier G, Xenarios I, Stockinger H. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 2012;40:597-603.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 597-603
-
-
Artimo, P.1
Jonnalagedda, M.2
Arnold, K.3
Baratin, D.4
Csardi, G.5
de Castro, E.6
Duvaud, S.7
Flegel, V.8
Fortier, A.9
Gasteiger, E.10
Grosdidier, A.11
Hernandez, C.12
Ioannidis, V.13
Kuznetsov, D.14
Liechti, R.15
Moretti, S.16
Mostaguir, K.17
Redaschi, N.18
Rossier, G.19
Xenarios, I.20
Stockinger, H.21
more..
-
42
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, PAley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 2012;40:742-753.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 742-753
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.A.4
Subhraveti, P.5
Keseler, I.M.6
Kothari, A.7
Krummenacker, M.8
Latendresse, M.9
Mueller, L.A.10
Ong, Q.11
Paley, S.12
Pujar, A.13
Shearer, A.G.14
Travers, M.15
Weerasinghe, D.16
Zhang, P.17
Karp, P.D.18
-
43
-
-
84876522835
-
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
-
Schomburg I, Chang A, Placzek S, Söhngen C, Rother M, Lang M, Munaretto C, Ulas S, Stelzer M, Grote A, Scheer M, Schomburg D. BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Res. 2013;41:764-772.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 764-772
-
-
Schomburg, I.1
Chang, A.2
Placzek, S.3
Söhngen, C.4
Rother, M.5
Lang, M.6
Munaretto, C.7
Ulas, S.8
Stelzer, M.9
Grote, A.10
Scheer, M.11
Schomburg, D.12
-
44
-
-
33746660425
-
Identification of genome-scale metabolic network models using experimentally measured flux profiles
-
Herrgard MJ, Fong SS, Palsson BØ. Identification of genome-scale metabolic network models using experimentally measured flux profiles. PLOS Comput Biol. 2006;2:676-686.
-
(2006)
PLOS Comput Biol
, vol.2
, pp. 676-686
-
-
Herrgard, M.J.1
Fong, S.S.2
Palsson, B.3
-
46
-
-
67449096729
-
Flux balance analysis of biological systems: applications and challenges
-
Raman K, Chandra N. Flux balance analysis of biological systems: applications and challenges. Brief Bioinform. 2009;10:435-449.
-
(2009)
Brief Bioinform
, vol.10
, pp. 435-449
-
-
Raman, K.1
Chandra, N.2
-
47
-
-
50249113230
-
Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production
-
Khannapho C, Zhao H, Bonde BK, Kierzek AM, Avignone-Rossa CA, Bushell ME. Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production. Metab Eng. 2008;10:227-233.
-
(2008)
Metab Eng
, vol.10
, pp. 227-233
-
-
Khannapho, C.1
Zhao, H.2
Bonde, B.K.3
Kierzek, A.M.4
Avignone-Rossa, C.A.5
Bushell, M.E.6
-
49
-
-
0003009091
-
Automated modelling of signal transduction networks
-
Steffen M, Petti A, Aach J, D'haeseleer P, Church G. Automated modelling of signal transduction networks. BMC Bioinformatics. 2002;3:34.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 34
-
-
Steffen, M.1
Petti, A.2
Aach, J.3
D'haeseleer, P.4
Church, G.5
-
50
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED. Metabolic network structure determines key aspects of functionality and regulation. Nature. 2002;420:190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
51
-
-
8844231118
-
Metabolic pathway analysis of enzyme-deficient human red blood cells
-
Çakir T, Tacer CS, Ülgen KÖ. Metabolic pathway analysis of enzyme-deficient human red blood cells. Biosystems. 2004;78:49-67.
-
(2004)
Biosystems
, vol.78
, pp. 49-67
-
-
Çakir, T.1
Tacer, C.S.2
Ülgen, K.O.3
-
53
-
-
79951528622
-
Exploring metabolic pathways in genome-scale networks via generating flux modes
-
Rezola A, de Figueiredo LF, Brock M, Pey J, Podhorski A, Wittmann C, Schuster S, Bockmayr A, Planes FJ. Exploring metabolic pathways in genome-scale networks via generating flux modes. Bioinformatics. 2011;27:534-540.
-
(2011)
Bioinformatics
, vol.27
, pp. 534-540
-
-
Rezola, A.1
de Figueiredo, L.F.2
Brock, M.3
Pey, J.4
Podhorski, A.5
Wittmann, C.6
Schuster, S.7
Bockmayr, A.8
Planes, F.J.9
-
54
-
-
84873338125
-
Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete
-
Andersen JL, Flamm C, Merkle D, Stadler PF. Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete. J Syst Chem. 2012;3:2012.
-
(2012)
J Syst Chem
, vol.3
, pp. 2012
-
-
Andersen, J.L.1
Flamm, C.2
Merkle, D.3
Stadler, P.F.4
-
55
-
-
0035167670
-
Relationship between glycolysis and exopolysaccharide biosynthesis in Lactococcus lactis
-
Ramos A, Boels IC, De Vos WM, Santos H. Relationship between glycolysis and exopolysaccharide biosynthesis in Lactococcus lactis. Appl Environ Microbiol. 2001;67:33-41.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 33-41
-
-
Ramos, A.1
Boels, I.C.2
De Vos, W.M.3
Santos, H.4
-
57
-
-
0027551978
-
13C-labeled glucose as the carbon source
-
13C-labeled glucose as the carbon source. Carbohydr Res. 1993;240:153-159.
-
(1993)
Carbohydr Res
, vol.240
, pp. 153-159
-
-
Kai, A.1
Ishino, T.2
Arashida, T.3
Hatanaka, K.4
Akaike, T.5
Matsuzaki, K.6
Kaneko, Y.7
Mimura, T.8
-
58
-
-
0032470264
-
A 13C-NMR study of exopolysaccharide synthesis in Rhizobium meliloti Su47 strain
-
Tavernier P, Portais JC, Besson I, Courtois J, Courtois B, Barbotin JN. A 13C-NMR study of exopolysaccharide synthesis in Rhizobium meliloti Su47 strain. J Chim Phys Phys Chim Biol. 1998;95:256-259.
-
(1998)
J Chim Phys Phys Chim Biol
, vol.95
, pp. 256-259
-
-
Tavernier, P.1
Portais, J.C.2
Besson, I.3
Courtois, J.4
Courtois, B.5
Barbotin, J.N.6
-
59
-
-
0033215131
-
Cyclic organization of the carbohydrate metabolism in Sinorhizobium meliloti
-
Portais JC, Tavernier P, Gosselin I, Barbotin JN. Cyclic organization of the carbohydrate metabolism in Sinorhizobium meliloti. Eur J Biochem. 2001;265:473-480.
-
(2001)
Eur J Biochem
, vol.265
, pp. 473-480
-
-
Portais, J.C.1
Tavernier, P.2
Gosselin, I.3
Barbotin, J.N.4
-
60
-
-
20444405643
-
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
-
Barreto M, Jedlicki E, Holmes DS. Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans. Appl Environ Microbiol. 2005;71:2902-2909.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2902-2909
-
-
Barreto, M.1
Jedlicki, E.2
Holmes, D.S.3
-
61
-
-
81255142163
-
Microbial exopolysaccharides: main examples of synthesis, excretion, genetics and extraction
-
Donot F, Fontana A, Baccou JC, Schorr-Galindo S. Microbial exopolysaccharides: main examples of synthesis, excretion, genetics and extraction. Carbohydr Polym. 2012;87:951-962.
-
(2012)
Carbohydr Polym
, vol.87
, pp. 951-962
-
-
Donot, F.1
Fontana, A.2
Baccou, J.C.3
Schorr-Galindo, S.4
-
62
-
-
84863627363
-
Partial purification of a Bacillus licheniformis levansucrase producing levan with antitumor activity
-
Dahech I, Belghith KS, Belghith H, Mejdoub H. Partial purification of a Bacillus licheniformis levansucrase producing levan with antitumor activity. Int J Biol Macromol. 2012;51:329-335.
-
(2012)
Int J Biol Macromol
, vol.51
, pp. 329-335
-
-
Dahech, I.1
Belghith, K.S.2
Belghith, H.3
Mejdoub, H.4
-
63
-
-
70349914683
-
Combined effect of temperature and light intensity on growth and extracellular polymeric substance production by the cyanobacterium Arthrospira platensis
-
Trabelsi L, Ben Ouada H, Bacha H, Ghoul M. Combined effect of temperature and light intensity on growth and extracellular polymeric substance production by the cyanobacterium Arthrospira platensis. J Appl Phycol. 2009;21:405-412.
-
(2009)
J Appl Phycol
, vol.21
, pp. 405-412
-
-
Trabelsi, L.1
Ben Ouada, H.2
Bacha, H.3
Ghoul, M.4
-
64
-
-
84879892524
-
Changes in extracellular polysaccharide content and morphology of Microcystis aeruginosa at different specific growth rates
-
Li M, Zhu W, Gao L, Lu L. Changes in extracellular polysaccharide content and morphology of Microcystis aeruginosa at different specific growth rates. J Appl Phycol. 2013;25:1023-1030.
-
(2013)
J Appl Phycol.
, vol.25
, pp. 1023-1030
-
-
Li, M.1
Zhu, W.2
Gao, L.3
Lu, L.4
-
65
-
-
77955658544
-
Effects of different wavelengths of light on lignin peroxidase production by the white-rot fungi Phanerochaete chrysosporium grown in submerged cultures
-
Ramírez DA, Muñoz SV, Atehortua L, Michel FC. Effects of different wavelengths of light on lignin peroxidase production by the white-rot fungi Phanerochaete chrysosporium grown in submerged cultures. Bioresour Technol. 2010;101:9213-9220.
-
(2010)
Bioresour Technol
, vol.101
, pp. 9213-9220
-
-
Ramírez, D.A.1
Muñoz, S.V.2
Atehortua, L.3
Michel, F.C.4
-
66
-
-
33846238031
-
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
-
Gómez-Consarnau L, González JM, Coll-Lladó M, Gourdon P, Pascher T, Neutze R, Pedrós-Alió C, Pinhassi J. Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature. 2007;445:210-213.
-
(2007)
Nature
, vol.445
, pp. 210-213
-
-
Gómez-Consarnau, L.1
González, J.M.2
Coll-Lladó, M.3
Gourdon, P.4
Pascher, T.5
Neutze, R.6
Pedrós-Alió, C.7
Pinhassi, J.8
-
67
-
-
84890168634
-
Effect of visible light on physical and enzymatic transformations of polysaccharides
-
Columbus E, editor, New York: Nova Science Publishers;
-
Fiedorowicz M, Tomasik P. Effect of visible light on physical and enzymatic transformations of polysaccharides. In: Columbus E, editor. Handbook of Carbohydrate Polymers: Development, Properties and Applications. New York: Nova Science Publishers; 2010:727-740.
-
(2010)
Handbook of Carbohydrate Polymers: Development, Properties and Applications
, pp. 727-740
-
-
Fiedorowicz, M.1
Tomasik, P.2
-
68
-
-
0036131271
-
Mannitol production by lactic acid bacteria: a review
-
Wisselink HW, Weusthuis RA, Eggink G, Hugenholtz J, Grobben GJ. Mannitol production by lactic acid bacteria: a review. Int Dairy J. 2002;12:151-161.
-
(2002)
Int Dairy J
, vol.12
, pp. 151-161
-
-
Wisselink, H.W.1
Weusthuis, R.A.2
Eggink, G.3
Hugenholtz, J.4
Grobben, G.J.5
-
70
-
-
81255211106
-
Exopolysaccharide production is required for biofilm formation and plant colonization by the nitrogen-fixing endophyte Gluconacetobacter diazotrophicus
-
Meneses CH, Rouws LF, Simões-Araújo JL, Vidal MS, Baldani JI. Exopolysaccharide production is required for biofilm formation and plant colonization by the nitrogen-fixing endophyte Gluconacetobacter diazotrophicus. Mol Plant Microbe Interact. 2011;24:1448-1458.
-
(2011)
Mol Plant Microbe Interact
, vol.24
, pp. 1448-1458
-
-
Meneses, C.H.1
Rouws, L.F.2
Simões-Araújo, J.L.3
Vidal, M.S.4
Baldani, J.I.5
-
71
-
-
2642522774
-
Antitumor activity of levan polysaccharides from selected microorganisms
-
Yoo SH, Yoon EJ, Cha J, Lee HG. Antitumor activity of levan polysaccharides from selected microorganisms. Int J Biol Macromol. 2004;34:37-41.
-
(2004)
Int J Biol Macromol
, vol.34
, pp. 37-41
-
-
Yoo, S.H.1
Yoon, E.J.2
Cha, J.3
Lee, H.G.4
-
72
-
-
0345097417
-
Exopolysaccharides produced by a clinical strain of Burkholderia cepacia isolated from a cystic fibrosis patient
-
Cescutti P, Impallomeni G, Garozzo D, Sturiale L, Herasimenka Y, Lagatolla C, Rizzo R. Exopolysaccharides produced by a clinical strain of Burkholderia cepacia isolated from a cystic fibrosis patient. Carbohydr Res. 2003;338:2687-2695.
-
(2003)
Carbohydr Res
, vol.338
, pp. 2687-2695
-
-
Cescutti, P.1
Impallomeni, G.2
Garozzo, D.3
Sturiale, L.4
Herasimenka, Y.5
Lagatolla, C.6
Rizzo, R.7
-
73
-
-
0035059530
-
Identification of a mannitol transporter, AgMaT1, in celery phloem
-
Noiraud N, Maurousset L, Lemoine R. Identification of a mannitol transporter, AgMaT1, in celery phloem. Plant Cell. 2001;13:695-705.
-
(2001)
Plant Cell
, vol.13
, pp. 695-705
-
-
Noiraud, N.1
Maurousset, L.2
Lemoine, R.3
-
74
-
-
0028364161
-
Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis
-
Deutscher J, Reizer J, Fischer C, Galinier A, Saier MH, Steinmetz M. Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis. J Bacteriol. 1994;176:3336-3344.
-
(1994)
J Bacteriol
, vol.176
, pp. 3336-3344
-
-
Deutscher, J.1
Reizer, J.2
Fischer, C.3
Galinier, A.4
Saier, M.H.5
Steinmetz, M.6
-
75
-
-
0035026054
-
Regulatory functions of serine-46-phosphorylated HPr in Lactococcus lactis
-
Monedero V, Kuipers OP, Jamet E, Deutscher, J. Regulatory functions of serine-46-phosphorylated HPr in Lactococcus lactis. J Bacteriol. 2001;183:3391-3398.
-
(2001)
J Bacteriol
, vol.183
, pp. 3391-3398
-
-
Monedero, V.1
Kuipers, O.P.2
Jamet, E.3
Deutscher, J.4
-
76
-
-
84857237854
-
Acetone-butanol fermentation of marine macroalgae
-
Huesemann MH, Kuo LJ, Urquhart L, Gill GA, Roesijadi G. Acetone-butanol fermentation of marine macroalgae. Bioresour Technol. 2012;108:305-309.
-
(2012)
Bioresour Technol
, vol.108
, pp. 305-309
-
-
Huesemann, M.H.1
Kuo, L.J.2
Urquhart, L.3
Gill, G.A.4
Roesijadi, G.5
-
77
-
-
0032944789
-
Increased levansucrase production by a genetically modified Acetobacter diazotrophicus strain in shaking batch cultures
-
Hernández L, Ramírez R, Hormaza JV, Madrazo J, Arrieta J. Increased levansucrase production by a genetically modified Acetobacter diazotrophicus strain in shaking batch cultures. Lett Appl Microbiol. 1999;28:41-44.
-
(1999)
Lett Appl Microbiol
, vol.28
, pp. 41-44
-
-
Hernández, L.1
Ramírez, R.2
Hormaza, J.V.3
Madrazo, J.4
Arrieta, J.5
-
78
-
-
0018824467
-
Role of components of growth media in regulating the synthesis of levansucrase by Gluconobacter oxydans
-
Tkachenko AA, Loitsyanskaya MS, Yaremenko TG. Role of components of growth media in regulating the synthesis of levansucrase by Gluconobacter oxydans. Mikrobiologiya. 1980;49:412-416.
-
(1980)
Mikrobiologiya
, vol.49
, pp. 412-416
-
-
Tkachenko, A.A.1
Loitsyanskaya, M.S.2
Yaremenko, T.G.3
-
79
-
-
0001050663
-
Production of a constitutive, extracellular levansucrase from Erwinia herbicola NRRL B-1678
-
Cote GL. Production of a constitutive, extracellular levansucrase from Erwinia herbicola NRRL B-1678. Biotechnol Lett. 1988;10:879-882.
-
(1988)
Biotechnol Lett
, vol.10
, pp. 879-882
-
-
Cote, G.L.1
-
80
-
-
34247859185
-
Thermally processed levan polymers
-
Barone JR, Medynets, M. Thermally processed levan polymers. Carbohydr Polym. 2007;69:554-561.
-
(2007)
Carbohydr Polym
, vol.69
, pp. 554-561
-
-
Barone, J.R.1
Medynets, M.2
|