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Volumn 8, Issue 3, 2013, Pages

TagGD: Fast and Accurate Software for DNA Tag Generation and Demultiplexing

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; COMPUTER PROGRAM; DEMULTIPLEXING; DNA BARCODING; DNA SEQUENCE; GENE DELETION; GENE INSERTION; GENETIC PROCEDURES; NUCLEIC ACID BASE SUBSTITUTION; SYSTEMATIC ERROR;

EID: 84874598852     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0057521     Document Type: Article
Times cited : (37)

References (15)
  • 1
    • 67650047735 scopus 로고    scopus 로고
    • DNA Sudoku - harnessing high-throughput sequencing for multiplexed specimen analysis
    • Erlich Y, Chang K, Gordon A, Ronen R, Navon O, et al. (2009) DNA Sudoku - harnessing high-throughput sequencing for multiplexed specimen analysis. Genome research 19: 1243-1253.
    • (2009) Genome Research , vol.19 , pp. 1243-1253
    • Erlich, Y.1    Chang, K.2    Gordon, A.3    Ronen, R.4    Navon, O.5
  • 5
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R, (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nature methods 5: 235-237.
    • (2008) Nature Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 6
    • 70749085913 scopus 로고    scopus 로고
    • BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing
    • Frank DN, (2009) BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing. BMC Bioinformatics 10: 362.
    • (2009) BMC Bioinformatics , vol.10 , pp. 362
    • Frank, D.N.1
  • 7
    • 84861214013 scopus 로고    scopus 로고
    • Generalized DNA barcode design based on Hamming codes
    • Bystrykh LV, (2012) Generalized DNA barcode design based on Hamming codes. PloS one 7: e36852.
    • (2012) PloS One , vol.7
    • Bystrykh, L.V.1
  • 9
    • 0001116877 scopus 로고
    • Binary Codes Capable of Correcting Deletions, Insertions and Reversals
    • Levenshtein VI, (1966) Binary Codes Capable of Correcting Deletions, Insertions and Reversals. Soviet Physics Doklady 10: 707-710.
    • (1966) Soviet Physics Doklady , vol.10 , pp. 707-710
    • Levenshtein, V.I.1
  • 10
    • 79959807202 scopus 로고    scopus 로고
    • Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences
    • McDonald MJ, Wang WC, Huang HD, Leu JY, (2011) Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences. PLoS biology 9: e1000622.
    • (2011) PLoS Biology , vol.9
    • McDonald, M.J.1    Wang, W.C.2    Huang, H.D.3    Leu, J.Y.4
  • 11
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H, (2008) Next-generation DNA sequencing. Nature biotechnology 26: 1135-1145.
    • (2008) Nature Biotechnology , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 12
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic acids research 31: 3406-3415.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 14
    • 0002806690 scopus 로고    scopus 로고
    • OpenMP: An industry standard API for shared-memory programming
    • Dagum L, Menon R, (1998) OpenMP: An industry standard API for shared-memory programming. Ieee Computational Science & Engineering 5: 46-55.
    • (1998) Ieee Computational Science & Engineering , vol.5 , pp. 46-55
    • Dagum, L.1    Menon, R.2
  • 15
    • 84863229330 scopus 로고    scopus 로고
    • Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
    • Melnikov A, Murugan A, Zhang X, Tesileanu T, Wang L, et al. (2012) Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nature biotechnology 30: 271-277.
    • (2012) Nature Biotechnology , vol.30 , pp. 271-277
    • Melnikov, A.1    Murugan, A.2    Zhang, X.3    Tesileanu, T.4    Wang, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.