Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods

Molecular Phylogenetics and Evolution

Volumn 13, Issue 2, 1999, Pages 255-274

  McArthur, Andrew G ^a   Koop, Ben F ^a  

^a UNIVERSITY OF VICTORIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 28S;

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOLLUSC; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLLUSCA; PHYLOGENY; RNA, RIBOSOMAL, 28S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0033217435     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0645     Document Type: Article

References (77)

1. Adamkewicz S. L., Harasewych M. G., Blake J., Saudek D., Bult C. J. A molecular phylogeny of the bivalve mollusks. Mol. Biol. Evol. 14:1997;619-629.
2. Bieler R. Gastropod phylogeny and systematics. Annu. Rev. Ecol. Syst. 23:1992;311-338.
3. Batten R. L. Shell structure of the Galapagos Rift limpet Neomphalus fretterae McLean, 1981, with notes on muscle scars and insertions. Am. Mus. Novitates. 2776:1984;1-13.
4. Black M. B., Halanych K. M., Maas P. A. Y., Hoeh W. R., Hashimoto J., Desbruyeres D., Lutz R. A., Vrijenhoek R. C. Molecular systematics of vestimentiferan tubeworms from hydrothermal vents and cold-water seeps. Mar. Biol. 130:1997;141-149.
5. Chase M. R., Etter R. J., Rex M. A., Quattro J. M. Extraction and amplification of mitochondrial DNA from formalin-fixed deep-sea mollusks. Biotechnology. 24:1998;243-247.
6. Childress J. J., Fisher C. R. The biology of hydrothermal vent animals: Physiology, biochemistry, and autotrophic symbiosis. Ocean. Mar. Biol. Annu. Rev. 30:1992;337-441.
7. Corliss J. B., Dymond J., Gordon L. I., Edmond J. M., von Herzen R. P., Ballard R. D., Green K., Williams D., Bainbridge A., Crane K., Andel T. H. Submarine thermal springs on the Galapagos Rift. Science. 203:1979;1073-1083.
8. Doyle J. J., Doyle J. L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:1987;11-15.
9. Emberton K. C., Kuncio G. S., Davis G. M., Phillips S. M., Monderewicz K. M., Guo Y. H. Comparison of recent classifications of stylommatophoran land-snail families, and evaluation of large-ribosomal-RNA sequencing for their phylogenetics. Malacologia. 31:1990;327-352.
10. Erwin D. H., Signor P. W. Extinction in an extinction-resistant clade: The evolutionary history of the Gastropoda. Dudley E. C. The Unity of Evolutionary Biology. 1991;152-160 Dioscorides Press, Portland.
11. Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
12. Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Biol. Biotech. 3:1994;294-299.
13. Fornari D. J., Embley R. W. Tectonic and volcanic controls on hydrothermal processes at the mid-ocean ridge: An overview based on near-bottom and submersible studies. Humphris S. E. Seafloor Hydrothermal Systems: Physical, Chemical, Biological and Geological Interactions. 1995;1-46 Am. Geophys. Union, Washington.
14. Fretter V., Graham A., McLean J. H. The anatomy of the Galapagos rift limpet, Neomphalus fretterae. Malacologia. 21:1981;337-361.
15. Friedrich M., Tautz D. An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera. Mol. Biol. Evol. 14:1997;644-653.
16. Harasewych M. G., Adamkewicz S. L., Blake J. A., Saudek D., Spriggs T., Bult C. J. Neogastropod phylogeny: A molecular perspective. J. Moll. Stud. 63:1997a;327-351.
17. Harasewych M. G., Adamkewicz S. L., Blake J. A., Saudek D., Spriggs T., Bult C. J. Phylogeny and relationships of pleurotomariid gastropods (Mollusca: Gastropoda): An assessment based on partial 18S rDNA and cytochrome c oxidase I sequences. Mol. Mar. Biol. Biotech. 6:1997b;1-20.
18. Hasegawa M., Kishino H., Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:1985;160-174.
19. Haszprunar G. On the origin and evolution of major gastropod groups, with special reference to the Streptoneura. J. Moll. Stud. 54:1988a;367-441.
20. Haszprunar G. Comparative anatomy of cocculiniform gastropods and its bearing on archaeogastropod systematics. Malacol. Rev. Suppl. 4:1988b;64-84.
21. Haszprunar G. The anatomy of Melanodrymia aurantiaca Hickman, a coiled archaeogastropod from the East Pacific hydrothermal vents (Mollusca, Gastropoda). Acta Zool. 70:1989;175-186.
22. Haszprunar G. The Archaeogastropoda. A clade, a grade or what else. Am. Malacol. Bull. 10:1993;165-177.
23. Hickman C. S. A new archaeogastropod (Rhipidoglossa, Trochacea) from hydrothermal vents on the East Pacific Rise. Zool. Scripta. 13:1984;19-25.
24. Hickman C. S., McLean J. H. Systematic revision and suprageneric classification of trochacean gastropods. Sci. Ser. Nat. Hist. Mus. L.A. County. 35:1990;1-169.
25. Huelsenbeck J. P. Is the Felsenstein zone a fly trap. Syst. Biol. 46:1997;69-74.
26. Huelsenbeck J. P., Crandall K. A. Phylogeny estimation and hypothesis testing using maximum likelihood. Annu. Rev. Ecol. Syst. 28:1997;437-466.
27. Israelsson O. The anatomy of Pachydermia laevis (Archaeogastropoda: 'Peltospiridae'). J. Moll. Stud. 64:1998;93-109.
28. Jukes T. H., Cantor C. R. Evolution of protein molecules. Munro H. N. Mammalian Protein Metabolism. 1969;21-132 Academic Press, New York.
29. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
30. Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of Hominoidea. J. Mol. Evol. 29:1989;170-179.
31. Little C. T. S., Herrington R. J., Maslennikov V. V., Morris N. J., Zaykov V. V. Silurian hydrothermal-vent community from the southern Urals, Russia. Nature. 385:1997;146-148.
32. Little C. T. S., Herrington R. J., Maslennikov V. V., Zaykov V. V. The fossil record of hydrothermal vent communities. Harrison K., Mills R. Modern Ocean Floor Processes and the Geological Record. 1998;259-270.
33. Littlewood D. T. J. Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences. Mol. Phylogenet. Evol. 3:1994;221-229.
34. Lutz R. A., Kennish M. J. Ecology of deep-sea hydrothermal vent communities: A review. Rev. Geophys. 31:1993;211-242.
35. Marchuk D., Drumm M., Saulino A., Collins F. S. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res. 19:1991;1154.
36. Marshall B. A. A new subfamily of the Addisoniidae associated with cephalopod beaks from tropical southwest Pacific, and a new pseudococculinid associated with chondrichthyan egg cases from New Zealand (Mollusca: Lepetelloidea). Veliger. 39:1996;250-259.
37. McArthur A. G., Tunnicliffe V. Relics and antiquity revisited in the modern vent fauna. Harrison K., Mills R. Modern Ocean Floor Processes and the Geological Record. 1998;271-291.
38. McHugh D. Molecular evidence that echiurans and pogonophorans are derived annelids. Proc. Natl. Acad. Sci. USA. 94:1997;8006-8009.
39. McLean J. H. The Galapagos rift limpet Neomphalus: Relevance to understanding the evolution of a major Paleozoic-Mesozoic radiation. Malacologia. 21:1981;291-336.
40. McLean J. H. Pyropeltidae, a new family of cocculiniform limpets from hydrothermal vents. Veliger. 30:1987;196-205.
41. Mclean J. H. New archaeogastropod limpets from hydrothermal vents; superfamily Lepetodrilacea. I. Systematic descriptions. Phil. Trans. R. Soc. Lond. B319:1988;1-32.
42. McLean J. H. New slit-limpets (Scissurellacea and Fissurellacea) from hydrothermal vents. Part 1. Systematic descriptions and comparisons based on shell and radular characters. Contr. Sci. Nat. Hist. Mus. L.A. County. 407:1989a;1-29.
43. McLean J. H. New archaeogastropod limpets from hydrothermal vents: New family Peltospiridae, new superfamily Peltospiracea. Zool. Scripta. 18:1989b;49-66.
44. Mclean J. H. Neolepetopsidae, a new docoglossate limpet family from hydrothermal vents and its relevance to patellogastropod evolution. J. Zool. Lond. 222:1990a;485-528.
45. McLean J. H. A new genus and species of neomphalid limpet from the Mariana vents with a review of current understanding of relationships among Neomphalacea and Peltospiracea. Nautilus. 104:1990b;77-86.
46. McLean J. H., Haszprunar G. Pyropeltidae, a new family of cocculiniform limpets from hydrothermal vents. Veliger. 30:1987;196-205.
47. Newman W. A. The abyssal hydrothermal vent invertebrate fauna: A glimpse of antiquity. Bull. Biol. Soc. Wash. 6:1985;231-242.
48. Newman W. A., Yamaguchi T. A new sessile barnacle (Cirripedia, Brachylepadomorpha) from the Lau Back-Arc Basin, Tonga; first record of a living representative since the Miocene. Bull. Mus. Natl. d'Hist. Nat. Paris. 17:1995;221-243.
49. O'Foighil D., Smith M. J. Evolution of asexuality in the cosmopolitan marine clam Lasaea. Evolution. 49:1995;140-163.
50. Peek A. S., Gustafson R. G., Lutz R. A., Vrijenhoek R. C. Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): Results from mitochondrial cytochrome oxidase subunit I. Mar. Biol. 130:1997;151-161.
51. Ponder W. F., Lindberg D. R. Gastropod phylogeny - Challenges for the 90s. Tayler J. D. Origin and Evolutionary Radiation of the Mollusca. 1996;135-154 Oxford Univ. Press, Oxford.
52. Ponder W. F., Lindberg D. R. Towards a phylogeny of gastropod molluscs: An analysis using morphological characters. Zool. J. Linn. Soc. 119:1997;83-265.
53. Rosenberg G., Davis G. M., Kuncio G. S., Harasewych M. G. Preliminary ribosomal RNA phylogeny of gastropod and unionoidean bivalve mollusks. Nautilus. Suppl. 2:1994;111-121.
54. Rosenberg G., Tillier S., Tillier A., Kuncio G. S., Hanlon R. T., Masselot M., Williams C. J. Ribosomal RNA phylogeny of selected major clades in the Mollusca. J. Moll. Stud. 63:1997;301-309.
55. Rouse G. W., Fauchald K. Cladistics and polychaetes. Zool. Scripta. 26:1997;139-204.
56. Runnegar B. Early evolution of the mollusca: The fossil record. Taylor J. D. Origin and Evolutionary Radiation of the Mollusca. 1996;77-87 Oxford Univ. Press, Oxford.
57. Salvini-Plawen L. V., Steiner G. Synapomorphies and plesiomorphies in higher classification of Mollusca. Taylor J. D. Origin and Evolutionary Radiation of the Mollusca. 1996;29-51 Oxford Univ. Press, Oxford.
58. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
59. Sullivan J., Swofford D. L. Are Guinea pigs rodents. J. Mamm. Evol. 4:1997;77-86.
60. Swofford, D. L. 1996, PAUP*: Phylogenetic analysis using parsimony (and other methods), pre-release version, Sinauer, Sunderland, MA.
61. Swofford D. K., Olsen G. J., Waddell P. J., Hillis D. M. Phylogenetic inference. Hillis D. M. Molecular Systematics. 1996;407-514 Sinauer, Sunderland.
62. Tillier S., Masselot M., Philippe H., Tillier A. Phylogénie moléculaire des Gastropoda (Mollusca) fondée sur le sequençage partiel de l'ARN ribosomique 28S. C. R. Acad. Sci. Paris, Sér. III. 314:1992;79-85.
63. Tillier S., Masselot M., Guerdox J., Tillier A. Monophyly of major gastropod taxa tested from partial 28S rRNA sequences, with emphasis on Euthyneura and hot vent limpets Peltospiroidea. Nautilus. Suppl. 2:1994;122-140.
64. Tillier S., Masselot M., Tillier A. Phylogenetic relationships of the pulmonate gastropods from rRNA sequences, and tempo and age of the stylommatophoran radiation. Taylor J. D. Origin and Evolutionary Radiation of the Mollusca. 1996;267-284 Oxford Univ. Press, Oxford.
65. Tracey S., Todd J. A., Erwin D. H. Mollusca: Gastropoda. Benton M. J. The Fossil Record 2. 1993;131-167 Chapman & Hall, London.
66. Tunnicliffe V. Biogeography and evolution of hydrothermal-vent fauna in the eastern Pacific Ocean. Proc. R. Soc. Lond. B233:1988;347-366.
67. Tunnicliffe V. The nature and origin of the modern hydrothermal vent fauna. Palaios. 7:1992;338-350.
68. Tunnicliffe V., Fowler M. R. Influence of sea-floor spreading on the global hydrothermal vent fauna. Nature. 379:1996;531-533.
69. Tunnicliffe V., Fowler C. M. R., McArthur A. G. Plate tectonic history and hot vent biogeography. MacLeod C. J. Tectonic, Magmatic, Hydrothermal and Biological Segmentation of Mid-Ocean Ridges. 1996;225-238.
70. Tunnicliffe V., McArthur A. G., McHugh D. A biogeographical perspective of the deep-sea hydrothermal vent fauna. Adv. Mar. Biol. 34:1998;353-442.
71. Van de Peer Y., Van der Auwera G., De Wachter R. The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J. Mol. Evol. 42:1996;201-210.
72. Warén A., Bouchet P. New gastropods from east Pacific hydrothermal vents. Zool. Scripta. 18:1989;67-102.
73. Warén A., Bouchet P. New records, species, genera, and a new family of gastropods from hydrothermal vents and hydrocarbon seeps. Zool. Scripta. 22:1993;1-90.
74. Warén A., Ponder W. F. New species, anatomy and systematic position of the hydrothermal vent and hydrocarbon seep gastropod family Provannidae fam. n. (Caenogastropoda). Zool. Scripta. 20:1991;27-56.
75. Winnepenninckx B., Backeljau T., van de Peer Y., De Wachter R. Structure of the small ribosomal subunit RNA of the pulmonate snail, Limicolaria kambeul, and phylogenetic analysis of the Metazoa. FEBS Lett. 309:1992;123-126.
76. Winnepenninckx B., Backeljau T., De Wachter R. Investigation of molluscan phylogeny on the basis of 18S rRNA sequences. Mol. Biol. Evol. 13:1996;1306-1317.
77. Winnepenninckx B., Steiner G., Backeljau T., De Wachter R. Details of gastropod phylogeny inferred from 18S rDNA sequences. Mol. Phylogenet. Evol. 9:1998;55-63.