메뉴 건너뛰기




Volumn 102, Issue 5-6, 2013, Pages 472-478

Identification and characterization of microRNAs in the developing maize endosperm

Author keywords

Endosperm; Identification; Maize; MiRNA; Sequencing

Indexed keywords

MICRORNA; UNTRANSLATED RNA;

EID: 84890128643     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.08.007     Document Type: Article
Times cited : (25)

References (50)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 0035800521 scopus 로고    scopus 로고
    • A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
    • Hutvagner G., McLachlan J., Pasquinelli A.E., Balint E., Tuschl T., Zamore P.D. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 2001, 293:834.
    • (2001) Science , vol.293 , pp. 834
    • Hutvagner, G.1    McLachlan, J.2    Pasquinelli, A.E.3    Balint, E.4    Tuschl, T.5    Zamore, P.D.6
  • 5
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
    • Ketting R.F., Fischer S.E.J., Bernstein E., Sijen T., Hannon G.J., Plasterk R.H.A. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 2001, 15:2654-2659.
    • (2001) Genes Dev. , vol.15 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.J.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.A.6
  • 6
    • 4344637081 scopus 로고    scopus 로고
    • Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
    • Kurihara Y., Watanabe Y. Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:12753-12758.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 12753-12758
    • Kurihara, Y.1    Watanabe, Y.2
  • 7
    • 0037015239 scopus 로고    scopus 로고
    • CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    • Park W., Li J., Song R., Messing J., Chen X. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol. 2002, 12:1484-1495.
    • (2002) Curr. Biol. , vol.12 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 8
    • 33344477448 scopus 로고    scopus 로고
    • Genomics of microRNA
    • Kim V.N., Nam J.W. Genomics of microRNA. Trends Genet. 2006, 22:165-173.
    • (2006) Trends Genet. , vol.22 , pp. 165-173
    • Kim, V.N.1    Nam, J.W.2
  • 9
    • 0036339614 scopus 로고    scopus 로고
    • HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower
    • Chen X., Liu J., Cheng Y., Jia D. HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower. Development 2002, 129:1085-1094.
    • (2002) Development , vol.129 , pp. 1085-1094
    • Chen, X.1    Liu, J.2    Cheng, Y.3    Jia, D.4
  • 11
    • 23944493378 scopus 로고    scopus 로고
    • Methylation Protects miRNAs and siRNAs from a 3'-End Uridylation Activity in Arabidopsis
    • Li J., Yang Z., Yu B., Liu J., Chen X. Methylation Protects miRNAs and siRNAs from a 3'-End Uridylation Activity in Arabidopsis. Curr. Biol. 2005, 15:1501-1507.
    • (2005) Curr. Biol. , vol.15 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 15
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory A.C., Vaucheret H. Functions of microRNAs and related small RNAs in plants. Nat. Genet. 2006, 38:S31-S36.
    • (2006) Nat. Genet. , vol.38
    • Mallory, A.C.1    Vaucheret, H.2
  • 16
    • 79957768322 scopus 로고    scopus 로고
    • Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor
    • Gou J.Y., Felippes F.F., Liu C.J., Weigel D., Wang J.W. Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell 2011, 23:1512-1522.
    • (2011) Plant Cell , vol.23 , pp. 1512-1522
    • Gou, J.Y.1    Felippes, F.F.2    Liu, C.J.3    Weigel, D.4    Wang, J.W.5
  • 17
    • 60749101298 scopus 로고    scopus 로고
    • Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis
    • Kim J.H., Woo H.R., Kim J., Lim P.O., Lee I.C., Choi S.H., Hwang D., Nam H.G. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science 2009, 323:1053.
    • (2009) Science , vol.323 , pp. 1053
    • Kim, J.H.1    Woo, H.R.2    Kim, J.3    Lim, P.O.4    Lee, I.C.5    Choi, S.H.6    Hwang, D.7    Nam, H.G.8
  • 18
    • 54949093292 scopus 로고    scopus 로고
    • Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana
    • Wang J.W., Schwab R., Czech B., Mica E., Weigel D. Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell 2008, 20:1231-1243.
    • (2008) Plant Cell , vol.20 , pp. 1231-1243
    • Wang, J.W.1    Schwab, R.2    Czech, B.3    Mica, E.4    Weigel, D.5
  • 19
    • 79551618858 scopus 로고    scopus 로고
    • MiR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis
    • Xing S., Salinas M., Hohmann S., Berndtgen R., Huijser P. miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis. Plant Cell 2010, 22:3935-3950.
    • (2010) Plant Cell , vol.22 , pp. 3935-3950
    • Xing, S.1    Salinas, M.2    Hohmann, S.3    Berndtgen, R.4    Huijser, P.5
  • 20
    • 78649806773 scopus 로고    scopus 로고
    • MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis
    • Nodine M.D., Bartel D.P. MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Gene Dev. 2010, 24:2678-2692.
    • (2010) Gene Dev. , vol.24 , pp. 2678-2692
    • Nodine, M.D.1    Bartel, D.P.2
  • 21
    • 67249094928 scopus 로고    scopus 로고
    • Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis
    • Liu D., Song Y., Chen Z., Yu D. Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis. Physiol. Plant. 2009, 136:223-236.
    • (2009) Physiol. Plant. , vol.136 , pp. 223-236
    • Liu, D.1    Song, Y.2    Chen, Z.3    Yu, D.4
  • 22
    • 33846926826 scopus 로고    scopus 로고
    • ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
    • Reyes J.L., Chua N.H. ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J. 2007, 49:592-606.
    • (2007) Plant J. , vol.49 , pp. 592-606
    • Reyes, J.L.1    Chua, N.H.2
  • 23
    • 67651094045 scopus 로고    scopus 로고
    • Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2. 2, SRK2E/SnRK2. 6/OST1 and SRK2I/SnRK2. 3, involved in ABA signaling are essential for the control of seed development and dormancy
    • Nakashima K., Fujita Y., Kanamori N., Katagiri T., Umezawa T., Kidokoro S., Maruyama K., Yoshida T., Ishiyama K., Kobayashi M. Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2. 2, SRK2E/SnRK2. 6/OST1 and SRK2I/SnRK2. 3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol. 2009, 50:1345-1363.
    • (2009) Plant Cell Physiol. , vol.50 , pp. 1345-1363
    • Nakashima, K.1    Fujita, Y.2    Kanamori, N.3    Katagiri, T.4    Umezawa, T.5    Kidokoro, S.6    Maruyama, K.7    Yoshida, T.8    Ishiyama, K.9    Kobayashi, M.10
  • 26
    • 77956297226 scopus 로고    scopus 로고
    • Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis
    • Liang C., Zhang X., Zou J., Xu D., Su F., Ye N. Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PLoS One 2010, 5:e10698.
    • (2010) PLoS One , vol.5
    • Liang, C.1    Zhang, X.2    Zou, J.3    Xu, D.4    Su, F.5    Ye, N.6
  • 27
    • 80054710686 scopus 로고    scopus 로고
    • Identification of novel maize miRNAs by measuring the precision of precursor processing
    • Jiao Y., Song W., Zhang M., Lai J. Identification of novel maize miRNAs by measuring the precision of precursor processing. BMC Plant Biol. 2011, 11:141.
    • (2011) BMC Plant Biol. , vol.11 , pp. 141
    • Jiao, Y.1    Song, W.2    Zhang, M.3    Lai, J.4
  • 28
    • 79952707191 scopus 로고    scopus 로고
    • Identification and characterization of maize microRNAs involved in the very early stage of seed germination
    • Wang L., Liu H., Li D., Chen H. Identification and characterization of maize microRNAs involved in the very early stage of seed germination. BMC Genomics 2011, 12:154.
    • (2011) BMC Genomics , vol.12 , pp. 154
    • Wang, L.1    Liu, H.2    Li, D.3    Chen, H.4
  • 29
    • 84867205057 scopus 로고    scopus 로고
    • Characterization of microRNAs expression during maize seed development
    • Kang M., Zhao Q., Zhu D., Yu J. Characterization of microRNAs expression during maize seed development. BMC Genomics 2012, 13:360.
    • (2012) BMC Genomics , vol.13 , pp. 360
    • Kang, M.1    Zhao, Q.2    Zhu, D.3    Yu, J.4
  • 32
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan R., Vaucheret H., Trejo J., Bartel D.P. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Gene Dev. 2006, 20:3407-3425.
    • (2006) Gene Dev. , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 34
    • 42149157716 scopus 로고    scopus 로고
    • Identification of novel and candidate miRNAs in rice by high throughput sequencing
    • Sunkar R., Zhou X., Zheng Y., Zhang W., Zhu J.K. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol. 2008, 8:25.
    • (2008) BMC Plant Biol. , vol.8 , pp. 25
    • Sunkar, R.1    Zhou, X.2    Zheng, Y.3    Zhang, W.4    Zhu, J.K.5
  • 35
    • 84863298341 scopus 로고    scopus 로고
    • Transcriptional regulation of Arabidopsis MIR168a and ARGONAUTE1 homeostasis in abscisic acid and abiotic stress responses
    • Li W., Cui X., Meng Z., Huang X., Xie Q., Wu H., Jin H., Zhang D., Liang W. Transcriptional regulation of Arabidopsis MIR168a and ARGONAUTE1 homeostasis in abscisic acid and abiotic stress responses. Plant Physiol. 2012, 158:1279-1292.
    • (2012) Plant Physiol. , vol.158 , pp. 1279-1292
    • Li, W.1    Cui, X.2    Meng, Z.3    Huang, X.4    Xie, Q.5    Wu, H.6    Jin, H.7    Zhang, D.8    Liang, W.9
  • 37
    • 76049118057 scopus 로고    scopus 로고
    • MiR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis
    • Nag A., King S., Jack T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:22534-22539.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 22534-22539
    • Nag, A.1    King, S.2    Jack, T.3
  • 38
    • 33750373240 scopus 로고    scopus 로고
    • Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3
    • Wu G., Poethig R.S. Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development 2006, 133:3539-3547.
    • (2006) Development , vol.133 , pp. 3539-3547
    • Wu, G.1    Poethig, R.S.2
  • 39
    • 68749100821 scopus 로고    scopus 로고
    • The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
    • Wu G., Park M.Y., Conway S.R., Wang J.W., Weigel D., Poethig R.S. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 2009, 138:750-759.
    • (2009) Cell , vol.138 , pp. 750-759
    • Wu, G.1    Park, M.Y.2    Conway, S.R.3    Wang, J.W.4    Weigel, D.5    Poethig, R.S.6
  • 40
    • 68749095252 scopus 로고    scopus 로고
    • MiR156-Regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
    • Wang J.W., Czech B., Weigel D. miR156-Regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell 2009, 138:738-749.
    • (2009) Cell , vol.138 , pp. 738-749
    • Wang, J.W.1    Czech, B.2    Weigel, D.3
  • 41
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • Mallory A.C., Bartel D.P., Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 2005, 17:1360-1375.
    • (2005) Plant Cell , vol.17 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 42
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis
    • Wang J.W., Wang L.J., Mao Y.B., Cai W.J., Xue H.W., Chen X.Y. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 2005, 17:2204-2216.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 43
    • 33645814822 scopus 로고    scopus 로고
    • Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells
    • Yang J.H., Han S.J., Yoon E.K., Lee W.S. Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells. Nucleic Acids Res. 2006, 34:1892-1899.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1892-1899
    • Yang, J.H.1    Han, S.J.2    Yoon, E.K.3    Lee, W.S.4
  • 44
    • 7044228135 scopus 로고    scopus 로고
    • Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition
    • Tian C., Muto H., Higuchi K., Matamura T., Tatematsu K., Koshiba T., Yamamoto K.T. Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J. 2004, 40:333-343.
    • (2004) Plant J. , vol.40 , pp. 333-343
    • Tian, C.1    Muto, H.2    Higuchi, K.3    Matamura, T.4    Tatematsu, K.5    Koshiba, T.6    Yamamoto, K.T.7
  • 45
    • 44649126240 scopus 로고    scopus 로고
    • Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda)
    • Oh T.J., Wartell R.M., Cairney J., Pullman G.S. Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda). New Phytol. 2008, 179:67-80.
    • (2008) New Phytol. , vol.179 , pp. 67-80
    • Oh, T.J.1    Wartell, R.M.2    Cairney, J.3    Pullman, G.S.4
  • 46
    • 80053583176 scopus 로고    scopus 로고
    • MiR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves
    • Si-Ammour A., Windels D., Arn-Bouldoires E., Kutter C., Ailhas J., Meins F., Vazquez F. miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant Physiol. 2011, 157:683-691.
    • (2011) Plant Physiol. , vol.157 , pp. 683-691
    • Si-Ammour, A.1    Windels, D.2    Arn-Bouldoires, E.3    Kutter, C.4    Ailhas, J.5    Meins, F.6    Vazquez, F.7
  • 47
    • 78650665524 scopus 로고    scopus 로고
    • MiR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis
    • Wang L., Gu X., Xu D., Wang W., Wang H., Zeng M., Chang Z., Huang H., Cui X. miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis. J. Exp. Bot. 2011, 62:761-773.
    • (2011) J. Exp. Bot. , vol.62 , pp. 761-773
    • Wang, L.1    Gu, X.2    Xu, D.3    Wang, W.4    Wang, H.5    Zeng, M.6    Chang, Z.7    Huang, H.8    Cui, X.9
  • 48
    • 36048980020 scopus 로고    scopus 로고
    • Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family
    • Allen R.S., Li J., Stahle M.I., Dubroue A., Gubler F., Millar A.A. Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:16371-16376.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 16371-16376
    • Allen, R.S.1    Li, J.2    Stahle, M.I.3    Dubroue, A.4    Gubler, F.5    Millar, A.A.6
  • 49
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R., Li Y., Kristiansen K., Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 50
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • Jiang P., Wu H., Wang W., Ma W., Sun X., Lu Z. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 2007, 35:W339-W344.
    • (2007) Nucleic Acids Res. , vol.35
    • Jiang, P.1    Wu, H.2    Wang, W.3    Ma, W.4    Sun, X.5    Lu, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.