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Volumn 102, Issue 5-6, 2013, Pages 448-455

Genomic analysis of HAdV-B14 isolate from the outbreak of febrile respiratory infection in China

Author keywords

Bioinformatics; Genome analysis; Human adenovirus; Respiratory disease

Indexed keywords

ARTICLE; CHINA; EPIDEMIC; FEBRILE RESPIRATORY ILLNESS; GENOME ANALYSIS; HUMAN ADENOVIRUS; HUMAN ADENOVIRUS 14; HUMAN ADENOVIRUS INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; UNITED STATES; VIRAL RESPIRATORY TRACT INFECTION; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS RECOMBINATION; VIRUS STRAIN;

EID: 84890124035     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.09.001     Document Type: Article
Times cited : (14)

References (50)
  • 1
    • 0026771406 scopus 로고
    • Adenoviruses in the immunocompromised host
    • Hierholzer J.C. Adenoviruses in the immunocompromised host. Clin. Microbiol. Rev. 1992, 5:262-274.
    • (1992) Clin. Microbiol. Rev. , vol.5 , pp. 262-274
    • Hierholzer, J.C.1
  • 2
    • 9444271094 scopus 로고
    • Isolation and typing of adenoviruses recovered from military recruits with acute respiratory disease in The Netherlands
    • Van Der Veen J., Kok G. Isolation and typing of adenoviruses recovered from military recruits with acute respiratory disease in The Netherlands. Am. J. Hyg. 1957, 65:119-129.
    • (1957) Am. J. Hyg. , vol.65 , pp. 119-129
    • Van Der Veen, J.1    Kok, G.2
  • 3
    • 84965250234 scopus 로고
    • Pharyngo-conjunctival fever; school outbreaks in England during the summer of 1955 associated with adenovirus types 3, 7, and 14
    • Kendall E.J., Riddle R.W., Tuck H.A., Rodan K.S., Andrews B.E., McDonald J.C. Pharyngo-conjunctival fever; school outbreaks in England during the summer of 1955 associated with adenovirus types 3, 7, and 14. Br. Med. J. 1957, 2:131-136.
    • (1957) Br. Med. J. , vol.2 , pp. 131-136
    • Kendall, E.J.1    Riddle, R.W.2    Tuck, H.A.3    Rodan, K.S.4    Andrews, B.E.5    McDonald, J.C.6
  • 5
    • 0033669860 scopus 로고    scopus 로고
    • The epidemiology of adenovirus infections in Greater Manchester, UK 1982-96
    • Cooper R.J., Hallett R., Tullo A.B., Klapper P.E. The epidemiology of adenovirus infections in Greater Manchester, UK 1982-96. Epidemiol. Infect. 2000, 125:333-345.
    • (2000) Epidemiol. Infect. , vol.125 , pp. 333-345
    • Cooper, R.J.1    Hallett, R.2    Tullo, A.B.3    Klapper, P.E.4
  • 6
    • 79251511635 scopus 로고    scopus 로고
    • Genome sequences of human adenovirus 14 isolates from mild respiratory cases and a fatal pneumonia, isolated during 2006-2007 epidemics in North America
    • Houng H.S., Gong H., Kajon A.E., Jones M.S., Kuschner R.A., Lyons A., Lott L., Lin K.H., Metzgar D. Genome sequences of human adenovirus 14 isolates from mild respiratory cases and a fatal pneumonia, isolated during 2006-2007 epidemics in North America. Respir. Res. 2010, 11:116.
    • (2010) Respir. Res. , vol.11 , pp. 116
    • Houng, H.S.1    Gong, H.2    Kajon, A.E.3    Jones, M.S.4    Kuschner, R.A.5    Lyons, A.6    Lott, L.7    Lin, K.H.8    Metzgar, D.9
  • 7
    • 84863877595 scopus 로고    scopus 로고
    • Severe community-acquired pneumonia caused by adenovirus type 11 in immunocompetent adults in Beijing
    • Gu L., Liu Z., Li X., Qu J., Guan W., Liu Y., Song S., Yu X., Cao B. Severe community-acquired pneumonia caused by adenovirus type 11 in immunocompetent adults in Beijing. J. Clin. Virol. 2012, 54:295-301.
    • (2012) J. Clin. Virol. , vol.54 , pp. 295-301
    • Gu, L.1    Liu, Z.2    Li, X.3    Qu, J.4    Guan, W.5    Liu, Y.6    Song, S.7    Yu, X.8    Cao, B.9
  • 8
    • 84864018396 scopus 로고    scopus 로고
    • Genome sequence of the first human adenovirus type 14 isolated in China
    • Zhang Q., Seto D., Zhao S., Zhu L., Zhao W., Wan C. Genome sequence of the first human adenovirus type 14 isolated in China. J. Virol. 2012, 86:7019-7020.
    • (2012) J. Virol. , vol.86 , pp. 7019-7020
    • Zhang, Q.1    Seto, D.2    Zhao, S.3    Zhu, L.4    Zhao, W.5    Wan, C.6
  • 9
    • 84875552445 scopus 로고    scopus 로고
    • Genome and bioinformatic analysis of a HAdV-B14p1 virus isolated from a baby with pneumonia in Beijing, China
    • Tang L., An J., Xie Z., Dehghan S., Seto D., Xu W., Ji Y. Genome and bioinformatic analysis of a HAdV-B14p1 virus isolated from a baby with pneumonia in Beijing, China. PLoS One 2013, 8:e60345.
    • (2013) PLoS One , vol.8
    • Tang, L.1    An, J.2    Xie, Z.3    Dehghan, S.4    Seto, D.5    Xu, W.6    Ji, Y.7
  • 10
    • 0035067432 scopus 로고    scopus 로고
    • Four new inverted terminal repeat sequences from bovine adenoviruses reveal striking differences in the length and content of the ITRs
    • Dan A., Elo P., Harrach B., Zadori Z., Benko M. Four new inverted terminal repeat sequences from bovine adenoviruses reveal striking differences in the length and content of the ITRs. Virus Genes 2001, 22:175-179.
    • (2001) Virus Genes , vol.22 , pp. 175-179
    • Dan, A.1    Elo, P.2    Harrach, B.3    Zadori, Z.4    Benko, M.5
  • 11
    • 0026598678 scopus 로고
    • Recognition of the adenovirus type 2 origin of DNA replication by the virally encoded DNA polymerase and preterminal proteins
    • Temperley S.M., Hay R.T. Recognition of the adenovirus type 2 origin of DNA replication by the virally encoded DNA polymerase and preterminal proteins. EMBO J. 1992, 11:761-768.
    • (1992) EMBO J. , vol.11 , pp. 761-768
    • Temperley, S.M.1    Hay, R.T.2
  • 12
    • 0025026436 scopus 로고
    • Transcription factors NFI and NFIII/oct-1 function independently, employing different mechanisms to enhance adenovirus DNA replication
    • Mul Y.M., Verrijzer C.P., van der Vliet P.C. Transcription factors NFI and NFIII/oct-1 function independently, employing different mechanisms to enhance adenovirus DNA replication. J. Virol. 1990, 64:5510-5518.
    • (1990) J. Virol. , vol.64 , pp. 5510-5518
    • Mul, Y.M.1    Verrijzer, C.P.2    van der Vliet, P.C.3
  • 13
    • 0027231877 scopus 로고
    • The NFIII/OCT-1 binding site stimulates adenovirus DNA replication in vivo and is functionally redundant with adjacent sequences
    • Hatfield L., Hearing P. The NFIII/OCT-1 binding site stimulates adenovirus DNA replication in vivo and is functionally redundant with adjacent sequences. J. Virol. 1993, 67:3931-3939.
    • (1993) J. Virol. , vol.67 , pp. 3931-3939
    • Hatfield, L.1    Hearing, P.2
  • 15
    • 0029978646 scopus 로고    scopus 로고
    • Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach
    • Ma Y., Mathews M.B. Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach. J. Virol. 1996, 70:5083-5099.
    • (1996) J. Virol. , vol.70 , pp. 5083-5099
    • Ma, Y.1    Mathews, M.B.2
  • 16
    • 12344262517 scopus 로고    scopus 로고
    • Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy
    • Purkayastha A., Su J., Carlisle S., Tibbetts C., Seto D. Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy. Virology 2005, 332:114-129.
    • (2005) Virology , vol.332 , pp. 114-129
    • Purkayastha, A.1    Su, J.2    Carlisle, S.3    Tibbetts, C.4    Seto, D.5
  • 17
    • 0028950291 scopus 로고
    • Human and simian adenoviruses: phylogenetic inferences from analysis of VA RNA genes
    • Kidd A.H., Garwicz D., Oberg M. Human and simian adenoviruses: phylogenetic inferences from analysis of VA RNA genes. Virology 1995, 207:32-45.
    • (1995) Virology , vol.207 , pp. 32-45
    • Kidd, A.H.1    Garwicz, D.2    Oberg, M.3
  • 20
    • 0035956259 scopus 로고    scopus 로고
    • Adenovirus E1A: remodelling the host cell, a life or death experience
    • Gallimore P.H., Turnell A.S. Adenovirus E1A: remodelling the host cell, a life or death experience. Oncogene 2001, 20:7824-7835.
    • (2001) Oncogene , vol.20 , pp. 7824-7835
    • Gallimore, P.H.1    Turnell, A.S.2
  • 21
    • 0018232933 scopus 로고
    • Structure of the adenovirus 2 early mRNAs
    • Berk A.J., Sharp P.A. Structure of the adenovirus 2 early mRNAs. Cell 1978, 14:695-711.
    • (1978) Cell , vol.14 , pp. 695-711
    • Berk, A.J.1    Sharp, P.A.2
  • 22
    • 27944464545 scopus 로고    scopus 로고
    • Recent lessons in gene expression, cell cycle control, and cell biology from adenovirus
    • Berk A.J. Recent lessons in gene expression, cell cycle control, and cell biology from adenovirus. Oncogene 2005, 24:7673-7685.
    • (2005) Oncogene , vol.24 , pp. 7673-7685
    • Berk, A.J.1
  • 23
    • 0042668446 scopus 로고    scopus 로고
    • Comparative analysis of the genome organization of human adenovirus 11, a member of the human adenovirus species B, and the commonly used human adenovirus 5 vector, a member of species C
    • Mei Y.F., Skog J., Lindman K., Wadell G. Comparative analysis of the genome organization of human adenovirus 11, a member of the human adenovirus species B, and the commonly used human adenovirus 5 vector, a member of species C. J. Gen. Virol. 2003, 84:2061-2071.
    • (2003) J. Gen. Virol. , vol.84 , pp. 2061-2071
    • Mei, Y.F.1    Skog, J.2    Lindman, K.3    Wadell, G.4
  • 24
    • 4644289537 scopus 로고    scopus 로고
    • Function of adenovirus E3 proteins and their interactions with immunoregulatory cell proteins
    • Horwitz M.S. Function of adenovirus E3 proteins and their interactions with immunoregulatory cell proteins. J. Gene Med. 2004, 6(Suppl. 1):S172-S183.
    • (2004) J. Gene Med. , vol.6 , Issue.SUPPL. 1
    • Horwitz, M.S.1
  • 25
    • 0141569454 scopus 로고    scopus 로고
    • Immune evasion by adenovirus E3 proteins: exploitation of intracellular trafficking pathways
    • Windheim M., Hilgendorf A., Burgert H.G. Immune evasion by adenovirus E3 proteins: exploitation of intracellular trafficking pathways. Curr. Top. Microbiol. Immunol. 2004, 273:29-85.
    • (2004) Curr. Top. Microbiol. Immunol. , vol.273 , pp. 29-85
    • Windheim, M.1    Hilgendorf, A.2    Burgert, H.G.3
  • 26
    • 0030955245 scopus 로고    scopus 로고
    • E4 gene function in adenovirus, adenovirus vector and adeno-associated virus infections
    • Leppard K.N. E4 gene function in adenovirus, adenovirus vector and adeno-associated virus infections. J. Gen. Virol. 1997, 78(Pt 9):2131-2138.
    • (1997) J. Gen. Virol. , vol.78 , Issue.PART. 9 , pp. 2131-2138
    • Leppard, K.N.1
  • 28
    • 0037270044 scopus 로고    scopus 로고
    • The structure and function of the adenovirus major late promoter
    • Young C.S. The structure and function of the adenovirus major late promoter. Curr. Top. Microbiol. Immunol. 2003, 272:213-249.
    • (2003) Curr. Top. Microbiol. Immunol. , vol.272 , pp. 213-249
    • Young, C.S.1
  • 29
    • 0019498688 scopus 로고
    • DNA sequence required for initiation of transcription in vitro from the major late promoter of adenovirus 2
    • Hu S.L., Manley J.L. DNA sequence required for initiation of transcription in vitro from the major late promoter of adenovirus 2. Proc. Natl. Acad. Sci. U. S. A. 1981, 78:820-824.
    • (1981) Proc. Natl. Acad. Sci. U. S. A. , vol.78 , pp. 820-824
    • Hu, S.L.1    Manley, J.L.2
  • 30
    • 0024379303 scopus 로고
    • Adenovirus L1 52- and 55-kilodalton proteins are required for assembly of virions
    • Hasson T.B., Soloway P.D., Ornelles D.A., Doerfler W., Shenk T. Adenovirus L1 52- and 55-kilodalton proteins are required for assembly of virions. J. Virol. 1989, 63:3612-3621.
    • (1989) J. Virol. , vol.63 , pp. 3612-3621
    • Hasson, T.B.1    Soloway, P.D.2    Ornelles, D.A.3    Doerfler, W.4    Shenk, T.5
  • 31
    • 0031660669 scopus 로고    scopus 로고
    • Encapsidation of viral DNA requires the adenovirus L1 52/55-kilodalton protein
    • Gustin K.E., Imperiale M.J. Encapsidation of viral DNA requires the adenovirus L1 52/55-kilodalton protein. J. Virol. 1998, 72:7860-7870.
    • (1998) J. Virol. , vol.72 , pp. 7860-7870
    • Gustin, K.E.1    Imperiale, M.J.2
  • 32
    • 0023079647 scopus 로고
    • Expression of protein IIIa of human adenovirus type 2 in Escherichia coli
    • Cuillel M., Milleville M., D'Halluin J.C. Expression of protein IIIa of human adenovirus type 2 in Escherichia coli. Gene 1987, 55:295-301.
    • (1987) Gene , vol.55 , pp. 295-301
    • Cuillel, M.1    Milleville, M.2    D'Halluin, J.C.3
  • 33
    • 0027166647 scopus 로고
    • Integrins alpha v beta 3 and alpha v beta 5 promote adenovirus internalization but not virus attachment
    • Wickham T.J., Mathias P., Cheresh D.A., Nemerow G.R. Integrins alpha v beta 3 and alpha v beta 5 promote adenovirus internalization but not virus attachment. Cell 1993, 73:309-319.
    • (1993) Cell , vol.73 , pp. 309-319
    • Wickham, T.J.1    Mathias, P.2    Cheresh, D.A.3    Nemerow, G.R.4
  • 34
    • 0023041995 scopus 로고
    • Identification of proteins and protein domains that contact DNA within adenovirus nucleoprotein cores by ultraviolet light crosslinking of oligonucleotides 32P-labelled in vivo
    • Chatterjee P.K., Vayda M.E., Flint S.J. Identification of proteins and protein domains that contact DNA within adenovirus nucleoprotein cores by ultraviolet light crosslinking of oligonucleotides 32P-labelled in vivo. J. Mol. Biol. 1986, 188:23-37.
    • (1986) J. Mol. Biol. , vol.188 , pp. 23-37
    • Chatterjee, P.K.1    Vayda, M.E.2    Flint, S.J.3
  • 35
    • 0346243942 scopus 로고    scopus 로고
    • Switch from capsid protein import to adenovirus assembly by cleavage of nuclear transport signals
    • Wodrich H., Guan T., Cingolani G., Von Seggern D., Nemerow G., Gerace L. Switch from capsid protein import to adenovirus assembly by cleavage of nuclear transport signals. EMBO J. 2003, 22:6245-6255.
    • (2003) EMBO J. , vol.22 , pp. 6245-6255
    • Wodrich, H.1    Guan, T.2    Cingolani, G.3    Von Seggern, D.4    Nemerow, G.5    Gerace, L.6
  • 36
    • 26444538909 scopus 로고    scopus 로고
    • Comparative sequence analysis of the hexon gene in the entire spectrum of human adenovirus serotypes: phylogenetic, taxonomic, and clinical implications
    • Ebner K., Pinsker W., Lion T. Comparative sequence analysis of the hexon gene in the entire spectrum of human adenovirus serotypes: phylogenetic, taxonomic, and clinical implications. J. Virol. 2005, 79:12635-12642.
    • (2005) J. Virol. , vol.79 , pp. 12635-12642
    • Ebner, K.1    Pinsker, W.2    Lion, T.3
  • 37
    • 0017237714 scopus 로고
    • Genetic analysis of adenovirus type 2 III. Temperature sensitivity of processing viral proteins
    • Weber J. Genetic analysis of adenovirus type 2 III. Temperature sensitivity of processing viral proteins. J. Virol. 1976, 17:462-471.
    • (1976) J. Virol. , vol.17 , pp. 462-471
    • Weber, J.1
  • 38
    • 0025359592 scopus 로고
    • The adenovirus L4 100-kilodalton protein is necessary for efficient translation of viral late mRNA species
    • Hayes B.W., Telling G.C., Myat M.M., Williams J.F., Flint S.J. The adenovirus L4 100-kilodalton protein is necessary for efficient translation of viral late mRNA species. J. Virol. 1990, 64:2732-2742.
    • (1990) J. Virol. , vol.64 , pp. 2732-2742
    • Hayes, B.W.1    Telling, G.C.2    Myat, M.M.3    Williams, J.F.4    Flint, S.J.5
  • 39
    • 0019787788 scopus 로고
    • Characterization of two temperature-sensitive mutants of type 5 adenovirus with mutations in the 100,000-dalton protein gene
    • Oosterom-Dragon E.A., Ginsberg H.S. Characterization of two temperature-sensitive mutants of type 5 adenovirus with mutations in the 100,000-dalton protein gene. J. Virol. 1981, 40:491-500.
    • (1981) J. Virol. , vol.40 , pp. 491-500
    • Oosterom-Dragon, E.A.1    Ginsberg, H.S.2
  • 40
    • 33745780727 scopus 로고    scopus 로고
    • The L4 22-kilodalton protein plays a role in packaging of the adenovirus genome
    • Ostapchuk P., Anderson M.E., Chandrasekhar S., Hearing P. The L4 22-kilodalton protein plays a role in packaging of the adenovirus genome. J. Virol. 2006, 80:6973-6981.
    • (2006) J. Virol. , vol.80 , pp. 6973-6981
    • Ostapchuk, P.1    Anderson, M.E.2    Chandrasekhar, S.3    Hearing, P.4
  • 41
    • 0035950604 scopus 로고    scopus 로고
    • Truncation of the human adenovirus type 5 L4 33-kDa protein: evidence for an essential role of the carboxy-terminus in the viral infectious cycle
    • Finnen R.L., Biddle J.F., Flint J. Truncation of the human adenovirus type 5 L4 33-kDa protein: evidence for an essential role of the carboxy-terminus in the viral infectious cycle. Virology 2001, 289:388-399.
    • (2001) Virology , vol.289 , pp. 388-399
    • Finnen, R.L.1    Biddle, J.F.2    Flint, J.3
  • 42
    • 0021971466 scopus 로고
    • A thermolabile mutant of adenovirus 5 resulting from a substitution mutation in the protein VIII gene
    • Liu G.Q., Babiss L.E., Volkert F.C., Young C.S., Ginsberg H.S. A thermolabile mutant of adenovirus 5 resulting from a substitution mutation in the protein VIII gene. J. Virol. 1985, 53:920-925.
    • (1985) J. Virol. , vol.53 , pp. 920-925
    • Liu, G.Q.1    Babiss, L.E.2    Volkert, F.C.3    Young, C.S.4    Ginsberg, H.S.5
  • 43
    • 0024962093 scopus 로고
    • Complementary peptide sequences in partner proteins of the adenovirus capsid
    • Caillet-Boudin M.L. Complementary peptide sequences in partner proteins of the adenovirus capsid. J. Mol. Biol. 1989, 208:195-198.
    • (1989) J. Mol. Biol. , vol.208 , pp. 195-198
    • Caillet-Boudin, M.L.1
  • 44
    • 0021092717 scopus 로고
    • Evidence for a repeating cross-beta sheet structure in the adenovirus fibre
    • Green N.M., Wrigley N.G., Russell W.C., Martin S.R., McLachlan A.D. Evidence for a repeating cross-beta sheet structure in the adenovirus fibre. EMBO J. 1983, 2:1357-1365.
    • (1983) EMBO J. , vol.2 , pp. 1357-1365
    • Green, N.M.1    Wrigley, N.G.2    Russell, W.C.3    Martin, S.R.4    McLachlan, A.D.5
  • 49
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 50
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6


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