AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads

Genomics

Volumn 102, Issue 5-6, 2013, Pages 500-506

  Criscuolo, Alexis ^a,b   Brisse, Sylvain ^a,b  

^a INSTITUT PASTEUR   (France)

^b CNRS   (France)

Author keywords

Adapter oligonucleotides; High throughput sequencing; K mer decomposition; Polynomial algorithm; Raw read trimming; Short contaminant sequence

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; BRUCELLA; BRUCELLA CETI; COMPUTER PROGRAM; COMPUTER SIMULATION; HIGH THROUGHPUT SEQUENCING; INFORMATION PROCESSING; KLEBSIELLA PNEUMONIAE; NUCLEOTIDE SEQUENCE; PLASMODIUM FALCIPARUM; POLYNOMIAL ALGORITHM; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ADAPTER OLIGONUCLEOTIDES; HIGH-THROUGHPUT SEQUENCING; K-MER DECOMPOSITION; POLYNOMIAL ALGORITHM; RAW READ TRIMMING; SHORT CONTAMINANT SEQUENCE;

ALGORITHMS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DNA; DNA CONTAMINATION; DNA PRIMERS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; QUALITY CONTROL; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84890119453     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.07.011     Document Type: Article

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