Quantification of seven apolipoproteins in human plasma by proteotypic peptides using fast LC-MS/MS

Proteomics - Clinical Applications

Volumn 7, Issue 11-12, 2013, Pages 794-801

  Ceglarek, Uta ^a,b   Dittrich, Julia ^a,b   Becker, Susen ^a,b   Baumann, Frank ^a   Kortz, Linda ^a,b   Thiery, Joachim ^a,b  

^a UNIVERSITY HOSPITAL LEIPZIG   (Germany)

^b UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

Apolipoproteins; Liquid chromatography linear ion trap mass spectrometry; Proteotypic peptide

Indexed keywords

APOLIPOPROTEIN; APOLIPOPROTEIN A1; APOLIPOPROTEIN A2; APOLIPOPROTEIN A4; APOLIPOPROTEIN B100; APOLIPOPROTEIN C1; APOLIPOPROTEIN C3; APOLIPOPROTEIN E; PEPTIDE;

ALKYLATION; ARTICLE; CONTROLLED STUDY; HUMAN; IMMUNOASSAY; ISOTOPE LABELING; LIMIT OF DETECTION; LIMIT OF QUANTITATION; LIQUID CHROMATOGRAPHY; MICROWAVE RADIATION; PRIORITY JOURNAL; PROTEIN BLOOD LEVEL; PROTEIN CONFORMATION; PROTEIN DENATURATION; QUANTITATIVE ANALYSIS; REDUCTION KINETICS; RELIABILITY; TANDEM MASS SPECTROMETRY; BLOOD ANALYSIS; CHEMISTRY; PROCEDURES;

APOLIPOPROTEINS; BLOOD CHEMICAL ANALYSIS; CHROMATOGRAPHY, LIQUID; HUMANS; PEPTIDES; TANDEM MASS SPECTROMETRY;

EID: 84890049008     PISSN: 18628346     EISSN: 18628354     Source Type: Journal    
DOI: 10.1002/prca.201300034     Document Type: Article

References (34)

1. Becker, S., Kortz, L., Helmschrodt, C., Thiery, J. et al., LC-MS-based metabolomics in the clinical laboratory. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2012, 883-884, 68-75.
2. Barr, J. R., Maggio, V. L., Patterson, D. G., Jr., Cooper, G. R. et al., Isotope dilution-mass spectrometric quantification of specific proteins: model application with apolipoprotein A-I. Clin. Chem. 1996, 42, 1676-1682.
3. Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W. et al., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. 2003, 100, 6940-6945.
4. Kirkpatrick, D. S., Gerber, S. A., Gygi, S. P., The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods 2005, 35, 265-273.
5. Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
6. Ong, S. E., Mann, M., Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 2005, 1, 252-262.
7. Elliott, M. H., Smith, D. S., Parker, C. E., Borchers, C., Current trends in quantitative proteomics. J. Mass Spectrom. 2009, 44, 1637-1660.
8. Lehmann, S., Hoofnagle, A., Hochstrasser, D., Brede, C. et al., Quantitative clinical chemistry proteomics (qCCP) using mass spectrometry: general characteristics and application. Clin. Chem. Lab. Med. 2013, 51, 919-935.
9. Mallick, P., Schirle, M., Chen, S. S., Flory, M. R. et al., Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 2007, 25, 125-131.
10. Patel, B. B., Barrero, C. A., Braverman, A., Kim, P. D. et al., Assessment of two immunodepletion methods: off-target effects and variations in immunodepletion efficiency may confound plasma proteomics. J. Proteome Res. 2012, 11, 5947-5958.
11. Bodzon-Kulakowska, A., Bierczynska-Krzysik, A., Dylag, T., Drabik, A. et al., Methods for samples preparation in proteomic research. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007, 849, 1-31.
12. Capelo, J. L., Carreira, R., Diniz, M., Fernandes, L. et al., Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques. Anal. Chim. Acta 2009, 650, 151-159.
13. Lesur, A., Varesio, E., Hopfgartner, G., Accelerated tryptic digestion for the analysis of biopharmaceutical monoclonal antibodies in plasma by liquid chromatography with tandem mass spectrometric detection. J. Chromatogr. A 2010, 1217, 57-64.
14. Russell, W. K., Park, Z. Y., Russell, D. H., Proteolysis in mixed organic-aqueous solvent systems: applications for peptide mass mapping using mass spectrometry. Anal. Chem. 2001, 73, 2682-2685.
15. Lopez-Ferrer, D., Capelo, J. L., Vazquez, J., Ultra fast trypsin digestion of proteins by high intensity focused ultrasound. J. Proteome Res. 2005, 4, 1569-1574.
16. Lopez-Ferrer, D., Heibeck, T. H., Petritis, K., Hixson, K. K. et al., Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound. J. Proteome Res. 2008, 7, 3860-3867.
17. Pramanik, B. N., Mirza, U. A., Ing, Y. H., Liu, Y. H. et al., Microwave-enhanced enzyme reaction for protein mapping by mass spectrometry: a new approach to protein digestion in minutes. Protein Sci. 2002, 11, 2676-2687.
18. Sun, W., Gao, S., Wang, L., Chen, Y. et al., Microwave-assisted protein preparation and enzymatic digestion in proteomics. Mol. Cell. Proteomics 2006, 5, 769-776.
19. Proc, J. L., Kuzyk, M. A., Hardie, D. B., Yang, J. et al., A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. J. Proteome Res. 2010, 9, 5422-5437.
20. Krastins, B., Prakash, A., Sarracino, D. A., Nedelkov, D. et al., Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in human plasma and serum. Clin. Biochem. 2013, 46, 399-410.
21. Contois, J. H., McConnell, J. P., Sethi, A. A., Csako, G. et al., Apolipoprotein B and cardiovascular disease risk: position statement from the AACC lipoproteins and vascular diseases division working group on best practices. Clin. Chem. 2009, 55, 407-419.
22. Davidson, M. H., Apolipoprotein measurements: is more widespread use clinically indicated? Clin. Cardiol. 2009, 32, 482-486.
23. Baumann, S., Ceglarek, U., Fiedler, G. M., Lembcke, J. et al., Standardized approach to proteome profiling of human serum based on magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin. Chem. 2005, 51, 973-980.
24. Beutner, F., Teupser, D., Gielen, S., Holdt, L. M. et al., Rationale and design of the Leipzig (LIFE) heart study: phenotyping and cardiovascular characteristics of patients with coronary artery disease. PLoS One 2011, 6, e29070.
25. Kuzyk, M. A., Smith, D., Yang, J., Cross, T. J. et al., Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol. Cell. Proteomics 2009, 8, 1860-1877.
26. Agger, S. A., Marney, L. C., Hoofnagle, A. N., Simultaneous quantification of apolipoprotein A-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry. Clin. Chem. 2010, 56, 1804-1813.
27. Deutsch, E. W., Eng, J. K., Zhang, H., King, N. L. et al., Human plasma peptideAtlas. Proteomics 2005, 5, 3497-3500.
28. Han, J. C., Han, G. Y., A procedure for quantitative determination of tris(2-carboxyethyl)phosphine, an odorless reducing agent more stable and effective than dithiothreitol. Anal. Biochem. 1994, 220, 5-10.
29. Kortz, L., Helmschrodt, C., Ceglarek, U., Fast liquid chromatography combined with mass spectrometry for the analysis of metabolites and proteins in human body fluids. Anal. Bioanal. Chem. 2011, 399, 2635-2644.
30. Thomas, L., Clinical Laboratory Diagnostics Use and Assessment of Clinical Laboratory Results, TH-Books-Verl.-Ges., Frankfurt/Main 1998.
31. Mesko, D., Marks, V., Differential Diagnosis by Laboratory Medicine : A Quick Reference for Physicians, Springer-Verlag, Berlin; New York 2002.
32. Kay, R. G., Gregory, B., Grace, P. B., Pleasance, S., The application of ultra-performance liquid chromatography/tandem mass spectrometry to the detection and quantitation of apolipoproteins in human serum. Rapid Commun. Mass Spectrom. 2007, 21, 2585-2593.
33. Lassman, M. E., McLaughlin, T. M., Somers, E. P., Stefanni, A. C. et al., A rapid method for cross-species quantitation of apolipoproteins A1, B48 and B100 in plasma by ultra-performance liquid chromatography/tandem mass spectrometry. Rapid Commun. Mass Spectrom. 2012, 26, 101-108.
34. Freije, J. R., Mulder, P. P., Werkman, W., Rieux, L. et al., Chemically modified, immobilized trypsin reactor with improved digestion efficiency. J. Proteome Res. 2005, 4, 1805-1813.