-
1
-
-
0842324801
-
The mechanisms of vesicle budding and fusion
-
Bonifacino JS, Glick BS. The mechanisms of vesicle budding and fusion. Cell 2004;116:153-166.
-
(2004)
Cell
, vol.116
, pp. 153-166
-
-
Bonifacino, J.S.1
Glick, B.S.2
-
2
-
-
34948835726
-
Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode
-
Dacks JB, Field MC. Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode. J Cell Sci 2007;120(Pt 17):2977-2985.
-
(2007)
J Cell Sci
, vol.120
, Issue.PART 17
, pp. 2977-2985
-
-
Dacks, J.B.1
Field, M.C.2
-
3
-
-
77957348884
-
Rab protein evolution and the history of the eukaryotic endomembrane system
-
Brighouse A, Dacks JB, Field MC. Rab protein evolution and the history of the eukaryotic endomembrane system. Cell Mol Life Sci 2010;67:3449-3465.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 3449-3465
-
-
Brighouse, A.1
Dacks, J.B.2
Field, M.C.3
-
4
-
-
49749133839
-
SNAREing the basis of multicellularity: consequences of protein family expansion during evolution
-
Kloepper TH, Kienle CN, Fasshauer D. SNAREing the basis of multicellularity: consequences of protein family expansion during evolution. Mol Biol Evol 2008;25:2055-2068.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2055-2068
-
-
Kloepper, T.H.1
Kienle, C.N.2
Fasshauer, D.3
-
5
-
-
57149118232
-
Structural evidence for common ancestry of the nuclear pore complex and vesicle coats
-
Brohawn SG, Leksa NC, Spear ED, Rajashankar KR, Schwartz TU. Structural evidence for common ancestry of the nuclear pore complex and vesicle coats. Science 2008;322:1369-1373.
-
(2008)
Science
, vol.322
, pp. 1369-1373
-
-
Brohawn, S.G.1
Leksa, N.C.2
Spear, E.D.3
Rajashankar, K.R.4
Schwartz, T.U.5
-
6
-
-
61349170303
-
First and last ancestors: reconstructing evolution of the endomembrane system with ESCRTs, vesicle coat proteins, and nuclear pore complexes
-
Field MC, Dacks JB. First and last ancestors: reconstructing evolution of the endomembrane system with ESCRTs, vesicle coat proteins, and nuclear pore complexes. Curr Opin Cell Biol 2009;21:4-13.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 4-13
-
-
Field, M.C.1
Dacks, J.B.2
-
7
-
-
59449093322
-
Repeated secondary loss of adaptin complex genes in the Apicomplexa
-
Nevin WD, Dacks JB. Repeated secondary loss of adaptin complex genes in the Apicomplexa. Parasitol Int 2009;58:86-94.
-
(2009)
Parasitol Int
, vol.58
, pp. 86-94
-
-
Nevin, W.D.1
Dacks, J.B.2
-
8
-
-
78650101853
-
Patterns and processes in the evolution of the eukaryotic endomembrane system
-
Elias M. Patterns and processes in the evolution of the eukaryotic endomembrane system. Mol Membr Biol 2010;27:469-489.
-
(2010)
Mol Membr Biol
, vol.27
, pp. 469-489
-
-
Elias, M.1
-
9
-
-
38649092668
-
Phylogeny of endocytic components yields insight into the process of nonendosymbiotic organelle evolution
-
Dacks JB, Poon PP, Field MC. Phylogeny of endocytic components yields insight into the process of nonendosymbiotic organelle evolution. Proc Natl Acad Sci USA 2008;105:588-593.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 588-593
-
-
Dacks, J.B.1
Poon, P.P.2
Field, M.C.3
-
10
-
-
9444273167
-
Components of coated vesicles and nuclear pore complexes share a common molecular architecture
-
Devos D, Dokudovskaya S, Alber F, Williams R, Chait BT, Sali A, Rout MP. Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol 2004;2:e380.
-
(2004)
PLoS Biol
, vol.2
-
-
Devos, D.1
Dokudovskaya, S.2
Alber, F.3
Williams, R.4
Chait, B.T.5
Sali, A.6
Rout, M.P.7
-
11
-
-
78649395975
-
Evolution. Intermediate steps
-
Devos DP, Reynaud EG. Evolution. Intermediate steps. Science 2010;330:1187-1188.
-
(2010)
Science
, vol.330
, pp. 1187-1188
-
-
Devos, D.P.1
Reynaud, E.G.2
-
12
-
-
34249282745
-
Homologs of eukaryotic Ras superfamily proteins in prokaryotes and their novel phylogenetic correlation with their eukaryotic analogs
-
Dong JH, Wen JF, Tian HF. Homologs of eukaryotic Ras superfamily proteins in prokaryotes and their novel phylogenetic correlation with their eukaryotic analogs. Gene 2007;396:116-124.
-
(2007)
Gene
, vol.396
, pp. 116-124
-
-
Dong, J.H.1
Wen, J.F.2
Tian, H.F.3
-
13
-
-
0035900653
-
Reconstructing/ deconstructing the earliest eukaryotes: how comparative genomics can help
-
Dacks JB, Doolittle WF. Reconstructing/ deconstructing the earliest eukaryotes: how comparative genomics can help. Cell 2001;107:419-425.
-
(2001)
Cell
, vol.107
, pp. 419-425
-
-
Dacks, J.B.1
Doolittle, W.F.2
-
14
-
-
33745761913
-
Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic
-
Yoshizawa AC, Kawashima S, Okuda S, Fujita M, Itoh M, Moriya Y, Hattori M, Kanehisa M. Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 2006;7:1104-1118.
-
(2006)
Traffic
, vol.7
, pp. 1104-1118
-
-
Yoshizawa, A.C.1
Kawashima, S.2
Okuda, S.3
Fujita, M.4
Itoh, M.5
Moriya, Y.6
Hattori, M.7
Kanehisa, M.8
-
15
-
-
58849092285
-
Membrane fusion: grappling with SNARE and SM proteins
-
Südhof TC, Rothman JE. Membrane fusion: grappling with SNARE and SM proteins. Science 2009;323:474-477.
-
(2009)
Science
, vol.323
, pp. 474-477
-
-
Südhof, T.C.1
Rothman, J.E.2
-
16
-
-
0035399476
-
Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain
-
Filippini F, Rossi V, Galli T, Budillon A, D'Urso M, D'Esposito M. Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain. Trends Biochem Sci 2001;26:407-409.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 407-409
-
-
Filippini, F.1
Rossi, V.2
Galli, T.3
Budillon, A.4
D'Urso, M.5
D'Esposito, M.6
-
17
-
-
0035958644
-
An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p
-
Tochio H, Tsui MM, Banfield DK, Zhang M. An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p. Science 2001;293:698-702.
-
(2001)
Science
, vol.293
, pp. 698-702
-
-
Tochio, H.1
Tsui, M.M.2
Banfield, D.K.3
Zhang, M.4
-
18
-
-
0041806509
-
A dual mechanism controlling the localization and function of exocytic v-SNAREs
-
Martinez-Arca S, Rudge R, Vacca M, Raposo G, Camonis J, Proux-Gillardeaux V, Daviet L, Formstecher E, Hamburger A, Filippini F, D'Esposito M, Galli T. A dual mechanism controlling the localization and function of exocytic v-SNAREs. Proc Natl Acad Sci USA 2003;100:9011-9016.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9011-9016
-
-
Martinez-Arca, S.1
Rudge, R.2
Vacca, M.3
Raposo, G.4
Camonis, J.5
Proux-Gillardeaux, V.6
Daviet, L.7
Formstecher, E.8
Hamburger, A.9
Filippini, F.10
D'Esposito, M.11
Galli, T.12
-
19
-
-
0037123766
-
Molecular architecture and functional model of the endocytic AP2 complex
-
Collins BM, McCoy AJ, Kent HM, Evans PR, Owen DJ. Molecular architecture and functional model of the endocytic AP2 complex. Cell 2002;109:523-535.
-
(2002)
Cell
, vol.109
, pp. 523-535
-
-
Collins, B.M.1
McCoy, A.J.2
Kent, H.M.3
Evans, P.R.4
Owen, D.J.5
-
20
-
-
0037147148
-
Crystal structure of SEDL and its implications for a genetic disease spondyloepiphyseal dysplasia tarda
-
Jang SB, Kim YG, Cho YS, Suh PG, Kim KH, Oh BH. Crystal structure of SEDL and its implications for a genetic disease spondyloepiphyseal dysplasia tarda. J Biol Chem 2002;277:49863-49869.
-
(2002)
J Biol Chem
, vol.277
, pp. 49863-49869
-
-
Jang, S.B.1
Kim, Y.G.2
Cho, Y.S.3
Suh, P.G.4
Kim, K.H.5
Oh, B.H.6
-
21
-
-
0037459447
-
Structural basis for the function of the beta subunit of the eukaryotic signal recognition particle receptor
-
Schwartz T, Blobel G. Structural basis for the function of the beta subunit of the eukaryotic signal recognition particle receptor. Cell 2003;112:793-803.
-
(2003)
Cell
, vol.112
, pp. 793-803
-
-
Schwartz, T.1
Blobel, G.2
-
22
-
-
8544275815
-
Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators
-
Rossi V, Banfield DK, Vacca M, Dietrich LE, Ungermann C, D'Esposito M, Galli T, Filippini F. Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators. Trends Biochem Sci 2004;29:682-688.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 682-688
-
-
Rossi, V.1
Banfield, D.K.2
Vacca, M.3
Dietrich, L.E.4
Ungermann, C.5
D'Esposito, M.6
Galli, T.7
Filippini, F.8
-
23
-
-
33750799403
-
The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering
-
Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M. The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering. Cell 2006;127:817-830.
-
(2006)
Cell
, vol.127
, pp. 817-830
-
-
Kim, Y.G.1
Raunser, S.2
Munger, C.3
Wagner, J.4
Song, Y.L.5
Cygler, M.6
Walz, T.7
Oh, B.H.8
Sacher, M.9
-
24
-
-
33646461205
-
The structure of the mammalian signal recognition particle (SRP) receptor as prototype for the interaction of small GTPases with Longin domains
-
Schlenker O, Hendricks A, Sinning I, Wild K. The structure of the mammalian signal recognition particle (SRP) receptor as prototype for the interaction of small GTPases with Longin domains. J Biol Chem 2006;281:8898-8906.
-
(2006)
J Biol Chem
, vol.281
, pp. 8898-8906
-
-
Schlenker, O.1
Hendricks, A.2
Sinning, I.3
Wild, K.4
-
25
-
-
33751109759
-
Longin-like folds identified in CHiPS and DUF254 proteins: vesicle trafficking complexes conserved in eukaryotic evolution
-
Kinch LN, Grishin NV. Longin-like folds identified in CHiPS and DUF254 proteins: vesicle trafficking complexes conserved in eukaryotic evolution. Protein Sci 2006;15:2669-2674.
-
(2006)
Protein Sci
, vol.15
, pp. 2669-2674
-
-
Kinch, L.N.1
Grishin, N.V.2
-
26
-
-
70749093076
-
Comparative analysis of plant genomes allows the definition of the ''Phytolongins'': a novel non-SNARE longin domain protein family
-
Vedovato M, Rossi V, Dacks JB, Filippini F. Comparative analysis of plant genomes allows the definition of the ''Phytolongins'': a novel non-SNARE longin domain protein family. BMC Genomics 2009;10:510.
-
(2009)
BMC Genomics
, vol.10
, pp. 510
-
-
Vedovato, M.1
Rossi, V.2
Dacks, J.B.3
Filippini, F.4
-
27
-
-
60149108669
-
Solution structure of human zeta-COP: direct evidences for structural similarity between COP I and clathrin-adaptor coats
-
Yu W, Lin J, Jin C, Xia B. Solution structure of human zeta-COP: direct evidences for structural similarity between COP I and clathrin-adaptor coats. J Mol Biol 2009;386:903-912.
-
(2009)
J Mol Biol
, vol.386
, pp. 903-912
-
-
Yu, W.1
Lin, J.2
Jin, C.3
Xia, B.4
-
28
-
-
79954614556
-
DENN domain proteins: regulators of Rab GTPases
-
Marat AL, Dokainish H, McPherson PS. DENN domain proteins: regulators of Rab GTPases. J Biol Chem 2011;286:13791-13800.
-
(2011)
J Biol Chem
, vol.286
, pp. 13791-13800
-
-
Marat, A.L.1
Dokainish, H.2
McPherson, P.S.3
-
29
-
-
81755163615
-
Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate
-
Wu X, Bradley MJ, Cai Y, Kümmel D, De La Cruz EM, Barr FA, Reinisch KM. Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate. Proc Natl Acad Sci USA 2011;108:18672-18677.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 18672-18677
-
-
Wu, X.1
Bradley, M.J.2
Cai, Y.3
Kümmel, D.4
De La Cruz, E.M.5
Barr, F.A.6
Reinisch, K.M.7
-
30
-
-
0034676026
-
Structure of the GAF domain: a ubiquitous signaling motif and a new class of cyclic GMP receptor
-
Ho YS, Burden LM, Hurley JH. Structure of the GAF domain: a ubiquitous signaling motif and a new class of cyclic GMP receptor. EMBO J 2000;19:5288-5299.
-
(2000)
EMBO J
, vol.19
, pp. 5288-5299
-
-
Ho, Y.S.1
Burden, L.M.2
Hurley, J.H.3
-
31
-
-
1642554150
-
GAF domains: two-billion-year-old molecular switches that bind cyclic nucleotides
-
Martinez SE, Beavo JA, Hol WG. GAF domains: two-billion-year-old molecular switches that bind cyclic nucleotides. Mol Interv 2002;2:317-323.
-
(2002)
Mol Interv
, vol.2
, pp. 317-323
-
-
Martinez, S.E.1
Beavo, J.A.2
Hol, W.G.3
-
32
-
-
58149187899
-
The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA. The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res 2009;37(Database issue):D310-314.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
Redfern, O.C.4
Garratt, R.5
Thornton, J.6
Orengo, C.A.7
-
33
-
-
77953172923
-
Early origin of genes encoding subunits of biogenesis of lysosome-related organelles complex-1, -2 and -3
-
Cheli VT, Dell'Angelica EC. Early origin of genes encoding subunits of biogenesis of lysosome-related organelles complex-1, -2 and -3. Traffic 2010;11:579-586.
-
(2010)
Traffic
, vol.11
, pp. 579-586
-
-
Cheli, V.T.1
Dell'Angelica, E.C.2
-
34
-
-
80055036494
-
The fifth adaptor protein complex
-
Hirst J, Barlow LD, Francisco GC, Sahlender DA, Seaman MN, Dacks JB, Robinson MS. The fifth adaptor protein complex. PLoS Biol 2011;9:e1001170.
-
(2011)
PLoS Biol
, vol.9
-
-
Hirst, J.1
Barlow, L.D.2
Francisco, G.C.3
Sahlender, D.A.4
Seaman, M.N.5
Dacks, J.B.6
Robinson, M.S.7
-
35
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
36
-
-
84856289301
-
Eukaryotic systematics: a user's guide for cell biologists and parasitologists
-
Walker G, Dorrell RG, Schlacht A, Dacks JB. Eukaryotic systematics: a user's guide for cell biologists and parasitologists. Parasitology 2011;138:1638-1663.
-
(2011)
Parasitology
, vol.138
, pp. 1638-1663
-
-
Walker, G.1
Dorrell, R.G.2
Schlacht, A.3
Dacks, J.B.4
-
37
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, Barta JR, Bowser SS, Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE, et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 2005;52:399-451.
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.2
Farmer, M.A.3
Andersen, R.A.4
Anderson, O.R.5
Barta, J.R.6
Bowser, S.S.7
Brugerolle, G.8
Fensome, R.A.9
Fredericq, S.10
James, T.Y.11
Karpov, S.12
Kugrens, P.13
Krug, J.14
Lane, C.E.15
-
38
-
-
73149097943
-
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates
-
Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol 2009;1:231-238.
-
(2009)
Genome Biol Evol
, vol.1
, pp. 231-238
-
-
Burki, F.1
Inagaki, Y.2
Bråte, J.3
Archibald, J.M.4
Keeling, P.J.5
Cavalier-Smith, T.6
Sakaguchi, M.7
Hashimoto, T.8
Horak, A.9
Kumar, S.10
Klaveness, D.11
Jakobsen, K.S.12
Pawlowski, J.13
Shalchian-Tabrizi, K.14
-
39
-
-
84859945474
-
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins
-
Burki F, Okamoto N, Pombert JF, Keeling PJ. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci 2012;279:2246-2254.
-
(2012)
Proc Biol Sci
, vol.279
, pp. 2246-2254
-
-
Burki, F.1
Okamoto, N.2
Pombert, J.F.3
Keeling, P.J.4
-
40
-
-
57749191527
-
Crystal structure of human synbindin reveals two conformations of longin domain
-
Fan S, Wei Z, Xu H, Gong W. Crystal structure of human synbindin reveals two conformations of longin domain. Biochem Biophys Res Commun 2009;378:338-343.
-
(2009)
Biochem Biophys Res Commun
, vol.378
, pp. 338-343
-
-
Fan, S.1
Wei, Z.2
Xu, H.3
Gong, W.4
-
41
-
-
65749116622
-
TRAPPC2L is a novel, highly conserved TRAPP-interacting protein
-
Scrivens PJ, Shahrzad N, Moores A, Morin A, Brunet S, Sacher M. TRAPPC2L is a novel, highly conserved TRAPP-interacting protein. Traffic 2009;10:724-736.
-
(2009)
Traffic
, vol.10
, pp. 724-736
-
-
Scrivens, P.J.1
Shahrzad, N.2
Moores, A.3
Morin, A.4
Brunet, S.5
Sacher, M.6
-
42
-
-
33847648364
-
Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins
-
Koumandou VL, Dacks JB, Coulson RM, Field MC. Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins. BMC Evol Biol 2007;7:29.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 29
-
-
Koumandou, V.L.1
Dacks, J.B.2
Coulson, R.M.3
Field, M.C.4
-
43
-
-
77951918362
-
Identification of the switch in early-to-late endosome transition
-
Poteryaev D, Datta S, Ackema K, Zerial M, Spang A. Identification of the switch in early-to-late endosome transition. Cell 2010;141:497-508.
-
(2010)
Cell
, vol.141
, pp. 497-508
-
-
Poteryaev, D.1
Datta, S.2
Ackema, K.3
Zerial, M.4
Spang, A.5
-
44
-
-
77957231342
-
The Mon1-Ccz1 complex is the GEF of the late endosomal Rab7 homolog Ypt7
-
Nordmann M, Cabrera M, Perz A, Bröcker C, Ostrowicz C, Engelbrecht-Vandré S, Ungermann C. The Mon1-Ccz1 complex is the GEF of the late endosomal Rab7 homolog Ypt7. Curr Biol 2010;20:1654-1659.
-
(2010)
Curr Biol
, vol.20
, pp. 1654-1659
-
-
Nordmann, M.1
Cabrera, M.2
Perz, A.3
Bröcker, C.4
Ostrowicz, C.5
Engelbrecht-Vandré, S.6
Ungermann, C.7
-
45
-
-
84869491973
-
BLOC-3 mutated in Hermansky-Pudlak syndrome is a Rab32/38 guanine nucleotide exchange factor
-
Gerondopoulos A, Langemeyer L, Liang JR, Linford A, Barr FA. BLOC-3 mutated in Hermansky-Pudlak syndrome is a Rab32/38 guanine nucleotide exchange factor. Curr Biol 2012;22:2135-2139.
-
(2012)
Curr Biol
, vol.22
, pp. 2135-2139
-
-
Gerondopoulos, A.1
Langemeyer, L.2
Liang, J.R.3
Linford, A.4
Barr, F.A.5
-
46
-
-
77951248675
-
Assembly of the biogenesis of lysosome-related organelles complex-3 (BLOC-3) and its interaction with Rab9
-
Kloer DP, Rojas R, Ivan V, Moriyama K, van Vlijmen T, Murthy N, Ghirlando R, van der Sluijs P, Hurley JH, Bonifacino JS. Assembly of the biogenesis of lysosome-related organelles complex-3 (BLOC-3) and its interaction with Rab9. J Biol Chem 2010;285:7794-7804.
-
(2010)
J Biol Chem
, vol.285
, pp. 7794-7804
-
-
Kloer, D.P.1
Rojas, R.2
Ivan, V.3
Moriyama, K.4
van Vlijmen, T.5
Murthy, N.6
Ghirlando, R.7
van der Sluijs, P.8
Hurley, J.H.9
Bonifacino, J.S.10
-
47
-
-
77954288774
-
Dali server: conservation mapping in 3D
-
Holm L, Rosenström P. Dali server: conservation mapping in 3D. Nucleic Acids Res 2010;38(Web Server issue):W545-549.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Holm, L.1
Rosenström, P.2
-
48
-
-
80053291460
-
Ligand-binding PAS domains in a genomic, cellular, and structural context
-
Henry JT, Crosson S. Ligand-binding PAS domains in a genomic, cellular, and structural context. Annu Rev Microbiol 2011;65:261-286.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 261-286
-
-
Henry, J.T.1
Crosson, S.2
-
49
-
-
78649675368
-
Conformation changes, N-terminal involvement and cGMP signal relay in phosphodiesterase-5 GAF domain
-
Wang H, Robinson H, Ke H. Conformation changes, N-terminal involvement and cGMP signal relay in phosphodiesterase-5 GAF domain. J Biol Chem 2010;285:38149-38156.
-
(2010)
J Biol Chem
, vol.285
, pp. 38149-38156
-
-
Wang, H.1
Robinson, H.2
Ke, H.3
-
50
-
-
33847383702
-
Changes in purine specificity in tandem GAF chimeras from cyanobacterial cyaB1 adenylate cyclase and rat phosphodiesterase 2
-
Linder JU, Bruder S, Schultz A, Schultz JE. Changes in purine specificity in tandem GAF chimeras from cyanobacterial cyaB1 adenylate cyclase and rat phosphodiesterase 2. FEBS J 2007;274:1514-1523.
-
(2007)
FEBS J
, vol.274
, pp. 1514-1523
-
-
Linder, J.U.1
Bruder, S.2
Schultz, A.3
Schultz, J.E.4
-
51
-
-
70549106122
-
How depolymerization can promote polymerization: the case of actin and profilin
-
Yarmola EG, Bubb MR. How depolymerization can promote polymerization: the case of actin and profilin. Bioessays 2009;31:1150-1160.
-
(2009)
Bioessays
, vol.31
, pp. 1150-1160
-
-
Yarmola, E.G.1
Bubb, M.R.2
-
52
-
-
2542432265
-
The structure of the MAPK scaffold, MP1, bound to its partner, p14. A complex with a critical role in endosomal map kinase signaling
-
Lunin VV, Munger C, Wagner J, Ye Z, Cygler M, Sacher M. The structure of the MAPK scaffold, MP1, bound to its partner, p14. A complex with a critical role in endosomal map kinase signaling. J Biol Chem 2004;279:23422-23430.
-
(2004)
J Biol Chem
, vol.279
, pp. 23422-23430
-
-
Lunin, V.V.1
Munger, C.2
Wagner, J.3
Ye, Z.4
Cygler, M.5
Sacher, M.6
-
53
-
-
77954568867
-
The crystal structure of dynein intermediate chain-light chain roadblock complex gives new insights into dynein assembly
-
Hall J, Song Y, Karplus PA, Barbar E. The crystal structure of dynein intermediate chain-light chain roadblock complex gives new insights into dynein assembly. J Biol Chem 2010;285:22566-22575.
-
(2010)
J Biol Chem
, vol.285
, pp. 22566-22575
-
-
Hall, J.1
Song, Y.2
Karplus, P.A.3
Barbar, E.4
-
54
-
-
84855612321
-
Unique properties of eukaryote-type actin and profilin horizontally transferred to cyanobacteria
-
Guljamow A, Delissen F, Baumann O, Thünemann AF, Dittmann E. Unique properties of eukaryote-type actin and profilin horizontally transferred to cyanobacteria. PLoS One 2012;7:e29926.
-
(2012)
PLoS One
, vol.7
-
-
Guljamow, A.1
Delissen, F.2
Baumann, O.3
Thünemann, A.F.4
Dittmann, E.5
-
55
-
-
0034597558
-
Dynein light chains of the Roadblock/LC7 group belong to an ancient protein superfamily implicated in NTPase regulation
-
Koonin EV, Aravind L. Dynein light chains of the Roadblock/LC7 group belong to an ancient protein superfamily implicated in NTPase regulation. Curr Biol 2000;10:R774-776.
-
(2000)
Curr Biol
, vol.10
-
-
Koonin, E.V.1
Aravind, L.2
-
56
-
-
50549086057
-
Molecular basis for the sorting of the SNARE VAMP7 into endocytic clathrin-coated vesicles by the ArfGAP Hrb
-
Pryor PR, Jackson L, Gray SR, Edeling MA, Thompson A, Sanderson CM, Evans PR, Owen DJ, Luzio JP. Molecular basis for the sorting of the SNARE VAMP7 into endocytic clathrin-coated vesicles by the ArfGAP Hrb. Cell 2008;134:817-827.
-
(2008)
Cell
, vol.134
, pp. 817-827
-
-
Pryor, P.R.1
Jackson, L.2
Gray, S.R.3
Edeling, M.A.4
Thompson, A.5
Sanderson, C.M.6
Evans, P.R.7
Owen, D.J.8
Luzio, J.P.9
-
57
-
-
77952902424
-
The longin SNARE VAMP7/TI-VAMP adopts a closed conformation
-
Vivona S, Liu CW, Strop P, Rossi V, Filippini F, Brunger AT. The longin SNARE VAMP7/TI-VAMP adopts a closed conformation. J Biol Chem 2010;285:17965-17973.
-
(2010)
J Biol Chem
, vol.285
, pp. 17965-17973
-
-
Vivona, S.1
Liu, C.W.2
Strop, P.3
Rossi, V.4
Filippini, F.5
Brunger, A.T.6
-
58
-
-
28144455335
-
Solution structure of isoform 1 of Roadblock/LC7: a light chain in the dynein complex
-
Song J, Tyler RC, Lee MS, Tyler EM, Markley JL. Solution structure of isoform 1 of Roadblock/LC7: a light chain in the dynein complex. J Mol Biol 2005;354:1043-1051.
-
(2005)
J Mol Biol
, vol.354
, pp. 1043-1051
-
-
Song, J.1
Tyler, R.C.2
Lee, M.S.3
Tyler, E.M.4
Markley, J.L.5
-
59
-
-
5044252143
-
An ear-core interaction regulates the recruitment of the AP-3 complex to membranes
-
Lefrançois S, Janvier K, Boehm M, Ooi CE, Bonifacino JS. An ear-core interaction regulates the recruitment of the AP-3 complex to membranes. Dev Cell 2004;7:619-625.
-
(2004)
Dev Cell
, vol.7
, pp. 619-625
-
-
Lefrançois, S.1
Janvier, K.2
Boehm, M.3
Ooi, C.E.4
Bonifacino, J.S.5
-
60
-
-
34247380779
-
Multiple and stepwise interactions between coatomer and ADP-ribosylation factor-1 (Arf1)-GTP
-
Sun Z, Anderl F, Fröhlich K, Zhao L, Hanke S, Brügger B, Wieland F, Béthune J. Multiple and stepwise interactions between coatomer and ADP-ribosylation factor-1 (Arf1)-GTP. Traffic 2007;8:582-593.
-
(2007)
Traffic
, vol.8
, pp. 582-593
-
-
Sun, Z.1
Anderl, F.2
Fröhlich, K.3
Zhao, L.4
Hanke, S.5
Brügger, B.6
Wieland, F.7
Béthune, J.8
-
61
-
-
45449083834
-
The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes
-
Cai Y, Chin HF, Lazarova D, Menon S, Fu C, Cai H, Sclafani A, Rodgers DW, De La Cruz EM, Ferro-Novick S, Reinisch KM. The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes. Cell 2008;133:1202-1213.
-
(2008)
Cell
, vol.133
, pp. 1202-1213
-
-
Cai, Y.1
Chin, H.F.2
Lazarova, D.3
Menon, S.4
Fu, C.5
Cai, H.6
Sclafani, A.7
Rodgers, D.W.8
De La Cruz, E.M.9
Ferro-Novick, S.10
Reinisch, K.M.11
-
62
-
-
84860901219
-
Rab14 and its exchange factor FAM116 link endocytic recycling and adherens junction stability in migrating cells
-
Linford A, Yoshimura S, Nunes Bastos R, Langemeyer L, Gerondopoulos A, Rigden DJ, Barr FA. Rab14 and its exchange factor FAM116 link endocytic recycling and adherens junction stability in migrating cells. Dev Cell 2012;22:952-966.
-
(2012)
Dev Cell
, vol.22
, pp. 952-966
-
-
Linford, A.1
Yoshimura, S.2
Nunes Bastos, R.3
Langemeyer, L.4
Gerondopoulos, A.5
Rigden, D.J.6
Barr, F.A.7
-
63
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001;98:4569-4574.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
64
-
-
40049101577
-
Rab6 family proteins interact with the dynein light chain protein DYNLRB1
-
Wanschers B, van de Vorstenbosch R, Wijers M, Wieringa B, King SM, Fransen J. Rab6 family proteins interact with the dynein light chain protein DYNLRB1. Cell Motil Cytoskeleton 2008;65:183-196.
-
(2008)
Cell Motil Cytoskeleton
, vol.65
, pp. 183-196
-
-
Wanschers, B.1
van de Vorstenbosch, R.2
Wijers, M.3
Wieringa, B.4
King, S.M.5
Fransen, J.6
-
65
-
-
84865492819
-
Crystal structure of the Gtr1p(GTP)-Gtr2p(GDP) protein complex reveals large structural rearrangements triggered by GTP-to-GDP conversion
-
Jeong JH, Lee KH, Kim YM, Kim DH, Oh BH, Kim YG. Crystal structure of the Gtr1p(GTP)-Gtr2p(GDP) protein complex reveals large structural rearrangements triggered by GTP-to-GDP conversion. J Biol Chem 2012;287:29648-29653.
-
(2012)
J Biol Chem
, vol.287
, pp. 29648-29653
-
-
Jeong, J.H.1
Lee, K.H.2
Kim, Y.M.3
Kim, D.H.4
Oh, B.H.5
Kim, Y.G.6
-
66
-
-
80054934194
-
Structural analysis of the Ras-like G protein MglA and its cognate GAP MglB and implications for bacterial polarity
-
Miertzschke M, Koerner C, Vetter IR, Keilberg D, Hot E, Leonardy S, Søgaard-Andersen L, Wittinghofer A. Structural analysis of the Ras-like G protein MglA and its cognate GAP MglB and implications for bacterial polarity. EMBO J 2011;30:4185-4197.
-
(2011)
EMBO J
, vol.30
, pp. 4185-4197
-
-
Miertzschke, M.1
Koerner, C.2
Vetter, I.R.3
Keilberg, D.4
Hot, E.5
Leonardy, S.6
Søgaard-Andersen, L.7
Wittinghofer, A.8
-
67
-
-
84874033425
-
Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1
-
Ren X, Farías GG, Canagarajah BJ, Bonifacino JS, Hurley JH. Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1. Cell 2013;152:755-767.
-
(2013)
Cell
, vol.152
, pp. 755-767
-
-
Ren, X.1
Farías, G.G.2
Canagarajah, B.J.3
Bonifacino, J.S.4
Hurley, J.H.5
-
68
-
-
84856760126
-
A structure-based mechanism for Arf1-dependent recruitment of coatomer to membranes
-
Yu X, Breitman M, Goldberg J. A structure-based mechanism for Arf1-dependent recruitment of coatomer to membranes. Cell 2012;148:530-542.
-
(2012)
Cell
, vol.148
, pp. 530-542
-
-
Yu, X.1
Breitman, M.2
Goldberg, J.3
-
69
-
-
77956740779
-
Structural conservation of components in the amino acid sensing branch of the TOR pathway in yeast and mammals
-
Kogan K, Spear ED, Kaiser CA, Fass D. Structural conservation of components in the amino acid sensing branch of the TOR pathway in yeast and mammals. J Mol Biol 2010;402:388-398.
-
(2010)
J Mol Biol
, vol.402
, pp. 388-398
-
-
Kogan, K.1
Spear, E.D.2
Kaiser, C.A.3
Fass, D.4
-
70
-
-
84866431363
-
Ragulator is a GEF for the rag GTPases that signal amino acid levels to mTORC1
-
Bar-Peled L, Schweitzer LD, Zoncu R, Sabatini DM. Ragulator is a GEF for the rag GTPases that signal amino acid levels to mTORC1. Cell 2012;150:1196-1208.
-
(2012)
Cell
, vol.150
, pp. 1196-1208
-
-
Bar-Peled, L.1
Schweitzer, L.D.2
Zoncu, R.3
Sabatini, D.M.4
-
71
-
-
77954874614
-
Regulation of dynamic polarity switching in bacteria by a Ras-like G-protein and its cognate GAP
-
Leonardy S, Miertzschke M, Bulyha I, Sperling E, Wittinghofer A, Søgaard-Andersen L. Regulation of dynamic polarity switching in bacteria by a Ras-like G-protein and its cognate GAP. EMBO J 2010;29:2276-2289.
-
(2010)
EMBO J
, vol.29
, pp. 2276-2289
-
-
Leonardy, S.1
Miertzschke, M.2
Bulyha, I.3
Sperling, E.4
Wittinghofer, A.5
Søgaard-Andersen, L.6
-
72
-
-
77955015657
-
A Bacterial Ras-Like Small GTP-Binding Protein and Its Cognate GAP Establish a Dynamic Spatial Polarity Axis to Control Directed Motility
-
Zhang Y, Franco M, Ducret A, Mignot T. A Bacterial Ras-Like Small GTP-Binding Protein and Its Cognate GAP Establish a Dynamic Spatial Polarity Axis to Control Directed Motility. PLoS Biol 2010;8:e1000430.
-
(2010)
PLoS Biol
, vol.8
-
-
Zhang, Y.1
Franco, M.2
Ducret, A.3
Mignot, T.4
-
73
-
-
84876431000
-
Discovery of new Longin and Roadblock domains that for platforms for small GTPases in Ragulator and TRAPP-II
-
Levine TP, Daniels RD, Wong LH, Gatta AT, Gerondopoulos A, Barr FA. Discovery of new Longin and Roadblock domains that for platforms for small GTPases in Ragulator and TRAPP-II. Small GTPases 2013;4:62-69.
-
(2013)
Small GTPases
, vol.4
, pp. 62-69
-
-
Levine, T.P.1
Daniels, R.D.2
Wong, L.H.3
Gatta, A.T.4
Gerondopoulos, A.5
Barr, F.A.6
-
74
-
-
34247579058
-
The transport signal on Sec22 for packaging into COPII-coated vesicles is a conformational epitope
-
Mancias JD, Goldberg J. The transport signal on Sec22 for packaging into COPII-coated vesicles is a conformational epitope. Mol Cell 2007;26:403-414.
-
(2007)
Mol Cell
, vol.26
, pp. 403-414
-
-
Mancias, J.D.1
Goldberg, J.2
-
75
-
-
84870799578
-
The binding of Varp to VAMP7 traps VAMP7 in a closed, fusogenically inactive conformation
-
Schäfer IB, Hesketh GG, Bright NA, Gray SR, Pryor PR, Evans PR, Luzio JP, Owen DJ. The binding of Varp to VAMP7 traps VAMP7 in a closed, fusogenically inactive conformation. Nat Struct Mol Biol 2012;19:1300-1309.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1300-1309
-
-
Schäfer, I.B.1
Hesketh, G.G.2
Bright, N.A.3
Gray, S.R.4
Pryor, P.R.5
Evans, P.R.6
Luzio, J.P.7
Owen, D.J.8
-
76
-
-
35649021883
-
Structural basis for the recruitment of profilin-actin complexes during filament elongation by Ena/VASP
-
Ferron F, Rebowski G, Lee SH, Dominguez R. Structural basis for the recruitment of profilin-actin complexes during filament elongation by Ena/VASP. EMBO J 2007;26:4597-4606.
-
(2007)
EMBO J
, vol.26
, pp. 4597-4606
-
-
Ferron, F.1
Rebowski, G.2
Lee, S.H.3
Dominguez, R.4
-
77
-
-
33947589440
-
Regulation of protein phosphorylation within the MKK1-ERK2 complex by MP1 and the MP1*P14 heterodimer
-
Brahma A, Dalby KN. Regulation of protein phosphorylation within the MKK1-ERK2 complex by MP1 and the MP1*P14 heterodimer. Arch Biochem Biophys 2007;460:85-91.
-
(2007)
Arch Biochem Biophys
, vol.460
, pp. 85-91
-
-
Brahma, A.1
Dalby, K.N.2
-
78
-
-
62049084764
-
The novel lipid raft adaptor p18 controls endosome dynamics by anchoring the MEK-ERK pathway to late endosomes
-
Nada S, Hondo A, Kasai A, Koike M, Saito K, Uchiyama Y, Okada M. The novel lipid raft adaptor p18 controls endosome dynamics by anchoring the MEK-ERK pathway to late endosomes. EMBO J 2009;28:477-489.
-
(2009)
EMBO J
, vol.28
, pp. 477-489
-
-
Nada, S.1
Hondo, A.2
Kasai, A.3
Koike, M.4
Saito, K.5
Uchiyama, Y.6
Okada, M.7
-
79
-
-
11144288242
-
Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication
-
Narikawa R, Okamoto S, Ikeuchi M, Ohmori M. Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication. DNA Res 2004;11:69-81.
-
(2004)
DNA Res
, vol.11
, pp. 69-81
-
-
Narikawa, R.1
Okamoto, S.2
Ikeuchi, M.3
Ohmori, M.4
-
80
-
-
1842427563
-
The extended left-handed helix: a simple nucleic acid binding-motif
-
Hicks JM, Hsu VL. The extended left-handed helix: a simple nucleic acid binding-motif. Proteins 2004;55:330-338.
-
(2004)
Proteins
, vol.55
, pp. 330-338
-
-
Hicks, J.M.1
Hsu, V.L.2
-
81
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 2011;39(web server issue):w29-37.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.WEB SERVER ISSUE
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
82
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Söding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 2005;33(web server issue):w244-248.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.WEB SERVER ISSUE
-
-
Söding, J.1
Biegert, A.2
Lupas, A.N.3
-
83
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abscal F, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005;21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abscal, F.1
Posada, D.2
-
84
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley LA, Sternberg MJ. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 2009;4:363-371.
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
85
-
-
38849092210
-
A note on difficult structure alignment problems
-
Sippl MJ, Wiederstein M. A note on difficult structure alignment problems. Bioinformatics 2008;24:426-427.
-
(2008)
Bioinformatics
, vol.24
, pp. 426-427
-
-
Sippl, M.J.1
Wiederstein, M.2
-
86
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E, Henrick K. Inference of macromolecular assemblies from crystalline state. J Mol Biol 2007;372:774-797.
-
(2007)
J Mol Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
87
-
-
78651235334
-
Computer-aided drug design platform using PyMOL
-
Lill MA, Danielson ML. Computer-aided drug design platform using PyMOL. J Comput Aided Mol Des 2011;25:13-19.
-
(2011)
J Comput Aided Mol Des
, vol.25
, pp. 13-19
-
-
Lill, M.A.1
Danielson, M.L.2
|