메뉴 건너뛰기




Volumn 63, Issue PART 12, 2013, Pages 4477-4483

Flaviramulus ichthyoenteri sp. nov., an N-acylhomoserine lactone-degrading bacterium isolated from the intestine of a flounder (Paralichthys olivaceus), and emended descriptions of the genus Flaviramulus and Flaviramulus basaltis

Author keywords

[No Author keywords available]

Indexed keywords

N ACYLHOMOSERINE LACTONE; PHOSPHATIDYLETHANOLAMINE;

EID: 84889572723     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.053744-0     Document Type: Article
Times cited : (23)

References (29)
  • 2
    • 0035989637 scopus 로고    scopus 로고
    • Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family
    • Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes
    • Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1049-1070
    • Bernardet, J.F.1    Nakagawa, Y.2    Holmes, B.3
  • 3
    • 50949127963 scopus 로고    scopus 로고
    • Sampling and staining for light microscopy
    • In 3rd edn, Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology
    • Beveridge, T., Lawrence, J. & Murray, R. (2007). Sampling and staining for light microscopy. In Methods for General and Molecular Microbiology, 3rd edn, pp. 19-33. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
    • (2007) Methods for General and Molecular Microbiology , pp. 19-33
    • Beveridge, T.1    Lawrence, J.2    Murray, R.3
  • 4
    • 67249091665 scopus 로고    scopus 로고
    • Quenching of acyl-homoserine lactone-dependent quorum sensing by enzymatic disruption of signal molecules
    • Czajkowski, R. & Jafra, S. (2009). Quenching of acyl-homoserine lactone-dependent quorum sensing by enzymatic disruption of signal molecules. Acta Biochim Pol 56, 1-16.
    • (2009) Acta Biochim Pol , vol.56 , pp. 1-16
    • Czajkowski, R.1    Jafra, S.2
  • 5
    • 33750021424 scopus 로고    scopus 로고
    • Flaviramulus basaltis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seafloor basalt
    • Einen, J. & Øvreås, L. (2006). Flaviramulus basaltis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seafloor basalt. Int J Syst Evol Microbiol 56, 2455-2461.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2455-2461
    • Einen, J.1    Øvreås, L.2
  • 6
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 7
    • 84876085517 scopus 로고    scopus 로고
    • Mariniflexile jejuense sp. nov., isolated from the junction between seawater and a freshwater spring, and emended description of the genus Mariniflexile
    • Jung, Y. T. & Yoon, J. H. (2013). Mariniflexile jejuense sp. nov., isolated from the junction between seawater and a freshwater spring, and emended description of the genus Mariniflexile. Int J Syst Evol Microbiol 63, 1329-1334.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 1329-1334
    • Jung, Y.T.1    Yoon, J.H.2
  • 8
    • 26244461943 scopus 로고    scopus 로고
    • Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea
    • Jung, S. Y., Kang, S. J., Lee, M. H., Lee, S. Y., Oh, T. K. & Yoon, J. H. (2005). Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 55, 1845-1849.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1845-1849
    • Jung, S.Y.1    Kang, S.J.2    Lee, M.H.3    Lee, S.Y.4    Oh, T.K.5    Yoon, J.H.6
  • 9
    • 45549098790 scopus 로고    scopus 로고
    • Bacterial quorum sensing: A new target for anti-infective immunotherapy
    • Kaufmann, G. F., Park, J. & Janda, K. D. (2008). Bacterial quorum sensing: a new target for anti-infective immunotherapy. Expert Opin Biol Ther 8, 719-724.
    • (2008) Expert Opin Biol Ther , vol.8 , pp. 719-724
    • Kaufmann, G.F.1    Park, J.2    Janda, K.D.3
  • 10
    • 84863230041 scopus 로고    scopus 로고
    • Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
    • Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 716-721
    • Kim, O.S.1    Cho, Y.J.2    Lee, K.3    Yoon, S.H.4    Kim, M.5    Na, H.6    Park, S.C.7    Jeon, Y.S.8    Lee, J.H.9
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 1-207.
    • (1987) Methods Microbiol , vol.19 , pp. 1-207
    • Komagata, K.1    Suzuki, K.2
  • 13
    • 0000144963 scopus 로고
    • Composition of sea water
    • Lyman, J. & Fleming, R. H. (1940). Composition of sea water. J Mar Res 3, 134-146.
    • (1940) J Mar Res , vol.3 , pp. 134-146
    • Lyman, J.1    Fleming, R.H.2
  • 14
    • 0031467411 scopus 로고    scopus 로고
    • Quorum sensing and Chromobacterium violaceum: Exploitation of violacein production and inhibition for the detection of Nacylhomoserine lactones
    • McClean, K. H., Winson, M. K., Fish, L., Taylor, A., Chhabra, S. R., Camara, M., Daykin, M., Lamb, J. H., Swift, S. & other authors (1997). Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of Nacylhomoserine lactones. Microbiology 143, 3703-3711.
    • (1997) Microbiology , vol.143 , pp. 3703-3711
    • McClean, K.H.1    Winson, M.K.2    Fish, L.3    Taylor, A.4    Chhabra, S.R.5    Camara, M.6    Daykin, M.7    Lamb, J.H.8    Swift, S.9
  • 15
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 17
    • 84889603629 scopus 로고    scopus 로고
    • Chryseobacterium hispalense sp. nov., a plant growthpromoting bacterium isolated from a rainwater pond in an olive plant nursery and emendation of the species Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium
    • Montero-Calasanz, M. C., Göker, M., Rohde, M., Spröer, C., Schumann, P., Busse, H.-J., Schmid, M., Tindall, B. J., Klenk, H.-P. & Camacho, M. Chryseobacterium hispalense sp. nov., a plant growthpromoting bacterium isolated from a rainwater pond in an olive plant nursery and emendation of the species Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int J Syst Evol Microbiol 63, 4386-4395.
    • Int J Syst Evol Microbiol , vol.63 , pp. 4386-4395
    • Montero-Calasanz, M.C.1    Göker, M.2    Rohde, M.3    Spröer, C.4    Schumann, P.5    Busse, H.-J.6    Schmid, M.7    Tindall, B.J.8    Klenk, H.-P.9    Camacho, M.10
  • 18
    • 0002658123 scopus 로고    scopus 로고
    • Simplified protocols for the preparation of genomic DNA from bacterial cultures
    • In Edited by A. D. L. Akkermans, J. D. van Elsas & F. J. de Bruijn. Dordrecht: Kluwer
    • Moore, E. R. B., Arnscheidt, A., Krüger, A., Strömpl, C. & Mau, M. (1999). Simplified protocols for the preparation of genomic DNA from bacterial cultures. In Molecular Microbial Ecology Manual 1.6.1, pp. 1-15. Edited by A. D. L. Akkermans, J. D. van Elsas & F. J. de Bruijn. Dordrecht: Kluwer.
    • (1999) Molecular Microbial Ecology Manual 1.6.1 , pp. 1-15
    • Moore, E.R.B.1    Arnscheidt, A.2    Krüger, A.3    Strömpl, C.4    Mau, M.5
  • 19
    • 33746256549 scopus 로고    scopus 로고
    • Mariniflexile gromovii gen. nov., sp. nov., a gliding bacterium isolated from the sea urchin Strongylocentrotus intermedius
    • Nedashkovskaya, O. I., Kim, S. B., Kwak, J., Mikhailov, V. V. & Bae, K. S. (2006). Mariniflexile gromovii gen. nov., sp. nov., a gliding bacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 56, 1635-1638.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1635-1638
    • Nedashkovskaya, O.I.1    Kim, S.B.2    Kwak, J.3    Mikhailov, V.V.4    Bae, K.S.5
  • 20
    • 84862924595 scopus 로고    scopus 로고
    • Gaetbulibacter aestuarii sp. nov., isolated from shallow coastal seawater, and emended description of the genus Gaetbulibacter
    • Park, S. C., Choe, H. N., Baik, K. S., Lee, K. H. & Seong, C. N. (2012). Gaetbulibacter aestuarii sp. nov., isolated from shallow coastal seawater, and emended description of the genus Gaetbulibacter. Int J Syst Evol Microbiol 62, 150-154.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 150-154
    • Park, S.C.1    Choe, H.N.2    Baik, K.S.3    Lee, K.H.4    Seong, C.N.5
  • 22
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 23
    • 0020032328 scopus 로고
    • Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen
    • Teather, R. M. & Wood, P. J. (1982). Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43, 777-780.
    • (1982) Appl Environ Microbiol , vol.43 , pp. 777-780
    • Teather, R.M.1    Wood, P.J.2
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 25
    • 65949111437 scopus 로고    scopus 로고
    • Phenotypic characterization and the principles of comparative systematics
    • In 3rd edn, Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology
    • Tindall, B. J., Sikorski, J., Smibert, R. A. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, 3rd edn, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
    • (2007) Methods for General and Molecular Microbiology , pp. 330-393
    • Tindall, B.J.1    Sikorski, J.2    Smibert, R.A.3    Krieg, N.R.4
  • 26
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
    • (1991) J Bacteriol , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 28
    • 37449026650 scopus 로고    scopus 로고
    • Quorum sensing, communication and crosskingdom signalling in the bacterial world
    • Williams, P. (2007). Quorum sensing, communication and crosskingdom signalling in the bacterial world. Microbiology 153, 3923-3938.
    • (2007) Microbiology , vol.153 , pp. 3923-3938
    • Williams, P.1
  • 29
    • 1042309477 scopus 로고    scopus 로고
    • Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence
    • Xie, C.-H. & Yokota, A. (2003). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
    • (2003) J Gen Appl Microbiol , vol.49 , pp. 345-349
    • Xie, C.-H.1    Yokota, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.