-
2
-
-
84861394598
-
Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets
-
Imai, M. et al. Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature 486, 420-428 (2012).
-
(2012)
Nature
, vol.486
, pp. 420-428
-
-
Imai, M.1
-
3
-
-
84862618108
-
Airborne transmission of influenza A/H5N1 virus between ferrets
-
Herfst, S. et al. Airborne transmission of influenza A/H5N1 virus between ferrets. Science 336, 1534-1541 (2012).
-
(2012)
Science
, vol.336
, pp. 1534-1541
-
-
Herfst, S.1
-
4
-
-
84861782665
-
Influenza viruses: From birds to humans
-
Reperant, L. A., Kuiken, T. & Osterhaus, A. D. Influenza viruses: from birds to humans. Hum. Vaccin. Immunother 8, 7-16 (2012).
-
(2012)
Hum. Vaccin. Immunother
, vol.8
, pp. 7-16
-
-
Reperant, L.A.1
Kuiken, T.2
Osterhaus, A.D.3
-
5
-
-
79953770830
-
The first influenza pandemic of the new millennium
-
Neumann, G. & Kawaoka, Y. The first influenza pandemic of the new millennium. Influenza Other Respi. Viruses 5, 157-166 (2011).
-
(2011)
Influenza Other Respi. Viruses
, vol.5
, pp. 157-166
-
-
Neumann, G.1
Kawaoka, Y.2
-
6
-
-
79551553098
-
Pathogenesis of the 1918 pandemic influenza virus
-
Watanabe, T. & Kawaoka, Y. Pathogenesis of the 1918 pandemic influenza virus. PLoS Pathog. 7, e1001218 (2011).
-
(2011)
PLoS Pathog
, vol.7
, pp. 1001218
-
-
Watanabe, T.1
Kawaoka, Y.2
-
7
-
-
29444461362
-
Emerging influenza viruses: Past and present
-
DOI 10.2174/156652405774962281
-
Kobasa, D. & Kawaoka, Y. Emerging influenza viruses: past and present. Curr. Mol. Med. 5, 791-803 (2005). (Pubitemid 43009518)
-
(2005)
Current Molecular Medicine
, vol.5
, Issue.8
, pp. 791-803
-
-
Kobasa, D.1
Kawaoka, Y.2
-
8
-
-
84862777115
-
Seroevidence for H5N1 influenza infections in humans: Meta-analysis
-
Wang, T. T., Parides, M. K. & Palese, P. Seroevidence for H5N1 influenza infections in humans: meta-analysis. Science 335, 1463 (2012).
-
(2012)
Science
, vol.335
, pp. 1463
-
-
Wang, T.T.1
Parides, M.K.2
Palese, P.3
-
9
-
-
19944432232
-
Probable person-to-person transmission of avian influenza A (H5N1)
-
Ungchusak, K. et al. Probable person-to-person transmission of avian influenza A (H5N1). N. Engl. J. Med 352, 333-340 (2005).
-
(2005)
N. Engl. J. Med
, vol.352
, pp. 333-340
-
-
Ungchusak, K.1
-
10
-
-
84866169036
-
Key molecular factors in haemagglutinin and PB2 contribute to efficient transmission of the 2009 H1N1 pandemic influenza virus
-
Zhang, Y. et al. Key molecular factors in haemagglutinin and PB2 contribute to efficient transmission of the 2009 H1N1 pandemic influenza virus. J. Virol. 86, 9666-9674 (2012).
-
(2012)
J. Virol.
, vol.86
, pp. 9666-9674
-
-
Zhang, Y.1
-
11
-
-
84871007119
-
Adaptive mutations in NEP compensate for defective H5N1 RNA replication in cultured human cells
-
Manz, B., Brunotte, L., Reuther, P. & Schwemmle, M. Adaptive mutations in NEP compensate for defective H5N1 RNA replication in cultured human cells. Nat. Commun 3, 802 (2012).
-
(2012)
Nat. Commun
, vol.3
, pp. 802
-
-
Manz, B.1
Brunotte, L.2
Reuther, P.3
Schwemmle, M.4
-
12
-
-
84862026523
-
Adaptive pathways of zoonotic influenza viruses: From exposure to establishment in humans
-
Reperant, L. A., Kuiken, T. & Osterhaus, A. D. Adaptive pathways of zoonotic influenza viruses: from exposure to establishment in humans. Vaccine 30, 4419-4434 (2012).
-
(2012)
Vaccine
, vol.30
, pp. 4419-4434
-
-
Reperant, L.A.1
Kuiken, T.2
Osterhaus, A.D.3
-
13
-
-
84861302626
-
Decreased neuraminidase activity is important for the adaptation of H5N1 influenza virus to human airway epithelium
-
Ilyushina, N. A., Bovin, N. V. & Webster, R. G. Decreased neuraminidase activity is important for the adaptation of H5N1 influenza virus to human airway epithelium. J. Virol. 86, 4724-4733 (2012).
-
(2012)
J. Virol.
, vol.86
, pp. 4724-4733
-
-
Ilyushina, N.A.1
Bovin, N.V.2
Webster, R.G.3
-
14
-
-
84857098515
-
Reassortment and mutation of the avian influenza virus polymerase pa subunit overcome species barriers
-
Mehle, A., Dugan, V. G., Taubenberger, J. K. & Doudna, J. A. Reassortment and mutation of the avian influenza virus polymerase PA subunit overcome species barriers. J. Virol. 86, 1750-1757 (2012).
-
(2012)
J. Virol.
, vol.86
, pp. 1750-1757
-
-
Mehle, A.1
Dugan, V.G.2
Taubenberger, J.K.3
Doudna, J.A.4
-
15
-
-
79956295593
-
Mutations in pa np and ha of a pandemic (h1n1) 2009 influenza virus contribute to its adaptation to mice
-
Sakabe, S., Ozawa, M., Takano, R., Iwastuki-Horimoto, K. & Kawaoka, Y. Mutations in PA, NP, and HA of a pandemic (H1N1) 2009 influenza virus contribute to its adaptation to mice. Virus Res. 158, 124-129 (2011).
-
(2011)
Virus Res.
, vol.158
, pp. 124-129
-
-
Sakabe, S.1
Ozawa, M.2
Takano, R.3
Iwastuki-Horimoto, K.4
Kawaoka, Y.5
-
16
-
-
0035823083
-
Molecular basis for high virulence of Hong Kong H5N1 influenza a viruses
-
DOI 10.1126/science.1062882
-
Hatta, M., Gao, P., Halfmann, P. & Kawaoka, Y. Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses. Science 293, 1840-1842 (2001). (Pubitemid 32845783)
-
(2001)
Science
, vol.293
, Issue.5536
, pp. 1840-1842
-
-
Hatta, H.1
Gao, P.2
Halfmann, P.3
Kawaoka, Y.4
-
18
-
-
77956826336
-
Viral mutation rates
-
Sanjuan, R., Nebot, M. R., Chirico, N., Mansky, L. M. & Belshaw, R. Viral mutation rates. J. Virol. 84, 9733-9748 (2010).
-
(2010)
J. Virol.
, vol.84
, pp. 9733-9748
-
-
Sanjuan, R.1
Nebot, M.R.2
Chirico, N.3
Mansky, L.M.4
Belshaw, R.5
-
19
-
-
84859497701
-
The role of receptor binding specificity in interspecies transmission of influenza viruses
-
Imai, M. & Kawaoka, Y. The role of receptor binding specificity in interspecies transmission of influenza viruses. Curr. Opin. Virol. 2, 160-167 (2012).
-
(2012)
Curr. Opin. Virol.
, vol.2
, pp. 160-167
-
-
Imai, M.1
Kawaoka, Y.2
-
20
-
-
0020520729
-
Receptor determinants of human and animal influenza virus isolates: Differences in receptor specificity of the H3 hemagglutinin based on species of origin
-
Rogers, G. N. & Paulson, J. C. Receptor determinants of human and animal influenza virus isolates: differences in receptor specificity of the H3 hemagglutinin based on species of origin. Virology 127, 361-373 (1983). (Pubitemid 13026446)
-
(1983)
Virology
, vol.127
, Issue.2
, pp. 361-373
-
-
Rogers, G.N.1
Paulson, J.C.2
-
21
-
-
77958149212
-
Biological and structural characterization of a host-adapting amino acid in influenza virus
-
Yamada, S. et al. Biological and structural characterization of a host-adapting amino acid in influenza virus. PLoS Pathog. 6 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Yamada, S.1
-
22
-
-
78650037441
-
PB2 Residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza A viruses in mice
-
Zhou, B. et al. PB2 Residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza A viruses in mice. J. Virol. 85, 357-365 (2011).
-
(2011)
J. Virol.
, vol.85
, pp. 357-365
-
-
Zhou, B.1
-
23
-
-
84865591846
-
A tale of three next generation sequencing platforms: Comparison of Ion torrent pacific biosciences and illumina miseq sequencers
-
Quail, M. A. et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13, 341 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
-
24
-
-
84860756398
-
Performance comparison of benchtop high-throughput sequencing platforms
-
Loman, N. J. et al. Performance comparison of benchtop high-throughput sequencing platforms. Nat. Biotechnol. 30, 434-439 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 434-439
-
-
Loman, N.J.1
-
25
-
-
29444452921
-
Molecular signatures of natural selection
-
DOI 10.1146/annurev.genet.39.073003.112420
-
Nielsen, R. Molecular signatures of natural selection. Annu. Rev. Genet. 39, 197-218 (2005). (Pubitemid 43011113)
-
(2005)
Annual Review of Genetics
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
26
-
-
0035137605
-
Pandemic threat posed by avian influenza A viruses
-
DOI 10.1128/CMR.14.1.129-149.2001
-
Horimoto, T. & Kawaoka, Y. Pandemic threat posed by avian influenza A viruses. Clin. Microbiol. Rev. 14, 129-149 (2001). (Pubitemid 32096210)
-
(2001)
Clinical Microbiology Reviews
, vol.14
, Issue.1
, pp. 129-149
-
-
Horimoto, T.1
Kawaoka, Y.2
-
27
-
-
62549148694
-
Human HA and polymerase subunit PB2 proteins confer transmission of an avian influenza virus through the air
-
Van Hoeven, N. et al. Human HA and polymerase subunit PB2 proteins confer transmission of an avian influenza virus through the air. Proc. Natl Acad. Sci. USA 106, 3366-3371 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 3366-3371
-
-
Van Hoeven, N.1
-
28
-
-
79551566282
-
Highly pathogenic avian influenza (H5N1): Pathways of exposure at the animal-human interface, a systematic review
-
Van Kerkhove, M. D. et al. Highly pathogenic avian influenza (H5N1): pathways of exposure at the animal-human interface, a systematic review. PLoS One 6 (2011).
-
(2011)
PLoS One
, vol.6
-
-
Van Kerkhove, M.D.1
-
29
-
-
84862610867
-
The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host
-
Russell, C. A. et al. The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host. Science 336, 1541-1547 (2012).
-
(2012)
Science
, vol.336
, pp. 1541-1547
-
-
Russell, C.A.1
-
30
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
DOI 10.1073/pnas.0802203105
-
Keele, B. F. et al. Identification and characterisation of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc. Natl Acad. Sci. USA 105, 7552-7557 (2008). (Pubitemid 351830056)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.21
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
Salazar, M.G.6
Sun, C.7
Grayson, T.8
Wang, S.9
Li, H.10
Wei, X.11
Jiang, C.12
Kirchherr, J.L.13
Gao, F.14
Anderson, J.A.15
Ping, L.-H.16
Swanstrom, R.17
Tomaras, G.D.18
Blattner, W.A.19
Goepfert, P.A.20
Kilby, J.M.21
Saag, M.S.22
Delwart, E.L.23
Busch, M.P.24
Cohen, M.S.25
Montefiori, D.C.26
Haynes, B.F.27
Gaschen, B.28
Athreya, G.S.29
Lee, H.Y.30
Wood, N.31
Seoighe, C.32
Perelson, A.S.33
Bhattacharya, T.34
Korber, B.T.35
Hahn, B.H.36
Shaw, G.M.37
more..
-
31
-
-
66049157864
-
Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1
-
Keele, B. F. et al. Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1. J. Exp. Med. 206, 1117-1134 (2009).
-
(2009)
J. Exp. Med.
, vol.206
, pp. 1117-1134
-
-
Keele, B.F.1
-
32
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
Salazar-Gonzalez, J. F. et al. Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J. Exp. Med. 206, 1273-1289 (2009).
-
(2009)
J. Exp. Med.
, vol.206
, pp. 1273-1289
-
-
Salazar-Gonzalez, J.F.1
-
33
-
-
79961013329
-
Barriers to mucosal transmission of immunodeficiency viruses
-
Keele, B. F. & Estes, J. D. Barriers to mucosal transmission of immunodeficiency viruses. Blood 118, 839-846 (2011).
-
(2011)
Blood
, vol.118
, pp. 839-846
-
-
Keele, B.F.1
Estes, J.D.2
-
34
-
-
84861325281
-
Tracking viral evolution during a disease outbreak: The rapid and complete selective sweep of a circovirus in the endangered Echo parakeet
-
Kundu, S. et al. Tracking viral evolution during a disease outbreak: the rapid and complete selective sweep of a circovirus in the endangered Echo parakeet. J. Virol. 86, 5221-5229 (2012).
-
(2012)
J. Virol.
, vol.86
, pp. 5221-5229
-
-
Kundu, S.1
-
35
-
-
80053439798
-
Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection
-
Bull, R. A. et al. Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection. PLoS Pathog. 7, e1002243 (2011).
-
(2011)
PLoS Pathog
, vol.7
, pp. 1002243
-
-
Bull, R.A.1
-
36
-
-
79957758257
-
Influenza virus aerosol exposure and analytical system for ferrets
-
Gustin, K. M. et al. Influenza virus aerosol exposure and analytical system for ferrets. Proc. Natl Acad. Sci. USA 108, 8432-8437 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 8432-8437
-
-
Gustin, K.M.1
-
37
-
-
78651247566
-
Influenza A virus NS1 gene mutations F103L and M106I increase replication and virulence
-
Dankar, S. K. et al. Influenza A virus NS1 gene mutations F103L and M106I increase replication and virulence. Virol. J. 8, 13 (2011).
-
(2011)
Virol. J.
, vol.8
, pp. 13
-
-
Dankar, S.K.1
-
38
-
-
78650648417
-
A single N66S mutation in the PB1-F2 protein of influenza A virus increases virulence by inhibiting the early interferon response in vivo
-
Conenello, G. M. et al. A single N66S mutation in the PB1-F2 protein of influenza A virus increases virulence by inhibiting the early interferon response in vivo. J. Virol. 85, 652-662 (2011).
-
(2011)
J. Virol.
, vol.85
, pp. 652-662
-
-
Conenello, G.M.1
-
39
-
-
79960414052
-
PA Residues in the 2009 H1N1 Pandemic influenza virus enhance avian influenza virus polymerase activity in mammalian cells
-
Bussey, K. A. et al. PA Residues in the 2009 H1N1 Pandemic influenza virus enhance avian influenza virus polymerase activity in mammalian cells. J. Virol. 85, 7020-7028 (2011).
-
(2011)
J. Virol.
, vol.85
, pp. 7020-7028
-
-
Bussey, K.A.1
-
40
-
-
29444438899
-
The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host
-
DOI 10.1073/pnas.0507415102
-
Gabriel, G. et al. The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host. Proc. Natl Acad. Sci. USA 102, 18590-18595 (2005). (Pubitemid 43011270)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.51
, pp. 18590-18595
-
-
Gabriel, G.1
Dauber, B.2
Wolff, T.3
Planz, O.4
Klenk, H.-D.5
Stech, J.6
-
41
-
-
1542315573
-
PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice
-
DOI 10.1016/j.virol.2003.11.030, PII S004268220300881X
-
Shinya, K. et al. PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice. Virology 320, 258-266 (2004). (Pubitemid 38315152)
-
(2004)
Virology
, vol.320
, Issue.2
, pp. 258-266
-
-
Shinya, K.1
Hamm, S.2
Hatta, M.3
Ito, H.4
Ito, T.5
Kawaoka, Y.6
-
42
-
-
36049011840
-
Growth of H5N1 influenza A viruses in the upper respiratory tracts of mice
-
DOI 10.1371/journal.ppat.0030133
-
Hatta, M. et al. Growth of H5N1 influenza A viruses in the upper respiratory tracts of mice. PLoS Pathog. 3, 1374-1379 (2007). (Pubitemid 350085602)
-
(2007)
PLoS Pathogens
, vol.3
, Issue.10
, pp. 1374-1379
-
-
Hatta, M.1
Hatta, Y.2
Kim, J.H.3
Watanabe, S.4
Shinya, K.5
Nguyen, T.6
Phuong, S.L.7
Quynh, M.L.8
Kawaoka, Y.9
-
43
-
-
0030747157
-
RNA virus mutations and fitness for survival
-
DOI 10.1146/annurev.micro.51.1.151
-
Domingo, E. & Holland, J. J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51, 151-178 (1997). (Pubitemid 27433046)
-
(1997)
Annual Review of Microbiology
, vol.51
, pp. 151-178
-
-
Domingo, E.1
Holland, J.J.2
-
44
-
-
2142753891
-
The population genetics and evolutionary epidemiology of RNA viruses
-
DOI 10.1038/nrmicro863
-
Moya, A., Holmes, E. C. & Gonzalez-Candelas, F. The population genetics and evolutionary epidemiology of RNA viruses. Nat. Rev. Microbiol. 2, 279-288 (2004). (Pubitemid 39490098)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.4
, pp. 279-288
-
-
Moya, A.1
Holmes, E.C.2
Gonzalez-Candelas, F.3
-
45
-
-
61849172898
-
Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes
-
Simen, B. B. et al. Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes. J. Infect. Dis. 199, 693-701 (2009).
-
(2009)
J. Infect. Dis.
, vol.199
, pp. 693-701
-
-
Simen, B.B.1
-
46
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M. & Gojobori, T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3, 418-426 (1986). (Pubitemid 16010523)
-
(1986)
Molecular Biology and Evolution
, vol.3
, Issue.5
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
|