-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen CL, Jensen JL, Ørntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Ørntoft, T.F.3
-
3
-
-
84861982167
-
Genetically modified sugarcane for bioenergy generation
-
Arruda P (2012) Genetically modified sugarcane for bioenergy generation. Curr Opin Biotechnol 23: 315-322
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 315-322
-
-
Arruda, P.1
-
5
-
-
78149439015
-
The genetics of lignin biosynthesis: Connecting genotype to phenotype
-
Bonawitz ND, Chapple C (2010) The genetics of lignin biosynthesis: connecting genotype to phenotype. Annu Rev Genet 44: 337-363
-
(2010)
Annu Rev Genet
, vol.44
, pp. 337-363
-
-
Bonawitz, N.D.1
Chapple, C.2
-
6
-
-
84857483338
-
A gene regulatory network for root epidermis cell differentiation in Arabidopsis
-
Bruex A, Kainkaryam RM, Wieckowski Y, Kang YH, Bernhardt C, Xia Y, Zheng X, Wang JY, Lee MM, Benfey P, et al (2012) A gene regulatory network for root epidermis cell differentiation in Arabidopsis. PLoS Genet 8: e1002446
-
(2012)
PLoS Genet
, vol.8
-
-
Bruex, A.1
Kainkaryam, R.M.2
Wieckowski, Y.3
Kang, Y.H.4
Bernhardt, C.5
Xia, Y.6
Zheng, X.7
Wang, J.Y.8
Lee, M.M.9
Benfey, P.10
-
8
-
-
4444251748
-
Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling
-
Casu RE, Dimmock CM, Chapman SC, Grof CP, McIntyre CL, Bonnett GD, Manners JM (2004) Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling. Plant Mol Biol 54: 503-517
-
(2004)
Plant Mol Biol
, vol.54
, pp. 503-517
-
-
Casu, R.E.1
Dimmock, C.M.2
Chapman, S.C.3
Grof, C.P.4
McIntyre, C.L.5
Bonnett, G.D.6
Manners, J.M.7
-
9
-
-
33847391585
-
Identification of transcripts associated with cell wall metabolism and development in the stem of sugarcane by Affymetrix GeneChip Sugarcane Genome Array expression profiling
-
Casu RE, Jarmey JM, Bonnett GD, Manners JM (2007) Identification of transcripts associated with cell wall metabolism and development in the stem of sugarcane by Affymetrix GeneChip Sugarcane Genome Array expression profiling. Funct Integr Genomics 7: 153-167
-
(2007)
Funct Integr Genomics
, vol.7
, pp. 153-167
-
-
Casu, R.E.1
Jarmey, J.M.2
Bonnett, G.D.3
Manners, J.M.4
-
10
-
-
84860277881
-
Enzymatic activity and proteomic profile of class III peroxidases during sugarcane stem development
-
Cesarino I, Araújo P, Sampaio Mayer JL, Paes Leme AF, Mazzafera P (2012) Enzymatic activity and proteomic profile of class III peroxidases during sugarcane stem development. Plant Physiol Biochem 55: 66-76
-
(2012)
Plant Physiol Biochem
, vol.55
, pp. 66-76
-
-
Cesarino, I.1
Araújo, P.2
Sampaio Mayer, J.L.3
Paes Leme, A.F.4
Mazzafera, P.5
-
11
-
-
84868689749
-
Suspension cell culture as a tool for the characterization of class III peroxidases in sugarcane
-
Cesarino I, Araújo P, Leme AFP, Creste S, Mazzafera P (2013a) Suspension cell culture as a tool for the characterization of class III peroxidases in sugarcane. Plant Physiol Biochem 62: 1-10
-
(2013)
Plant Physiol Biochem
, vol.62
, pp. 1-10
-
-
Cesarino, I.1
Araújo, P.2
Leme, A.F.P.3
Creste, S.4
Mazzafera, P.5
-
12
-
-
84876049964
-
Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant
-
Cesarino I, Araújo P, Sampaio Mayer JL, Vicentini R, Berthet S, Demedts B, Vanholme B, Boerjan W, Mazzafera P (2013b) Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant. J Exp Bot 64: 1769-1781
-
(2013)
J Exp Bot
, vol.64
, pp. 1769-1781
-
-
Cesarino, I.1
Araújo, P.2
Sampaio Mayer, J.L.3
Vicentini, R.4
Berthet, S.5
Demedts, B.6
Vanholme, B.7
Boerjan, W.8
Mazzafera, P.9
-
13
-
-
79954818103
-
Sugarcane (Saccharum × officinarum): A reference study for the regulation of genetically modified cultivars in Brazil
-
Cheavegatti-Gianotto A, de Abreu HM, Arruda P, Bespalhok Filho JC, Burnquist WL, Creste S, di Ciero L, Ferro JA, de Oliveira Figueira AV, de Sousa Filgueiras T, et al (2011) Sugarcane (Saccharum × officinarum): a reference study for the regulation of genetically modified cultivars in Brazil. Trop Plant Biol 4: 62-89
-
(2011)
Trop Plant Biol
, vol.4
, pp. 62-89
-
-
Cheavegatti-Gianotto, A.1
de Abreu, H.M.2
Arruda, P.3
Bespalhok Filho, J.C.4
Burnquist, W.L.5
Creste, S.6
di Ciero, L.7
Ferro, J.A.8
de Oliveira Figueira, A.V.9
de Sousa Filgueiras, T.10
-
14
-
-
34447319626
-
Lignin modification improves fermentable sugar yields for biofuel production
-
Chen F, Dixon RA (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol 25: 759-761
-
(2007)
Nat Biotechnol
, vol.25
, pp. 759-761
-
-
Chen, F.1
Dixon, R.A.2
-
15
-
-
0037174459
-
Lignin deposition and associated changes in anatomy, enzyme activity, gene expression, and ruminal degradability in stems of tall fescue at different developmental stages
-
Chen L, Auh C, Chen F, Cheng X, Aljoe H, Dixon RA, Wang Z (2002) Lignin deposition and associated changes in anatomy, enzyme activity, gene expression, and ruminal degradability in stems of tall fescue at different developmental stages. J Agric Food Chem 50: 5558-5565
-
(2002)
J Agric Food Chem
, vol.50
, pp. 5558-5565
-
-
Chen, L.1
Auh, C.2
Chen, F.3
Cheng, X.4
Aljoe, H.5
Dixon, R.A.6
Wang, Z.7
-
17
-
-
20544466892
-
On-line identification of sugarcane (Saccharum officinarum L.) methoxyflavones by liquid chromatography-UV detection using post-column derivatization and liquid chromatography-mass spectrometry
-
Colombo R, Yariwake JH, Queiroz EF, Ndjoko K, Hostettmann K (2005) On-line identification of sugarcane (Saccharum officinarum L.) methoxyflavones by liquid chromatography-UV detection using post-column derivatization and liquid chromatography-mass spectrometry. J Chromatogr A 1082: 51-59
-
(2005)
J Chromatogr A
, vol.1082
, pp. 51-59
-
-
Colombo, R.1
Yariwake, J.H.2
Queiroz, E.F.3
Ndjoko, K.4
Hostettmann, K.5
-
18
-
-
33748787397
-
On-line identification of further flavone C-and O-glycosides from sugarcane (Saccharum officinarum L., Gramineae) by HPLC-UV-MS
-
Colombo R, Yariwake JH, Queiroz EF, Ndjoko K, Hostettmann K (2006) On-line identification of further flavone C-and O-glycosides from sugarcane (Saccharum officinarum L., Gramineae) by HPLC-UV-MS. Phytochem Anal 17: 337-343
-
(2006)
Phytochem Anal
, vol.17
, pp. 337-343
-
-
Colombo, R.1
Yariwake, J.H.2
Queiroz, E.F.3
Ndjoko, K.4
Hostettmann, K.5
-
19
-
-
84862189842
-
Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods
-
Del Río JC, Rencoret J, Prinsen P, Martínez AT, Ralph J, Gutiérrez A (2012) Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods. J Agric Food Chem 60: 5922-5935
-
(2012)
J Agric Food Chem
, vol.60
, pp. 5922-5935
-
-
Del Río, J.C.1
Rencoret, J.2
Prinsen, P.3
Martínez, A.T.4
Ralph, J.5
Gutiérrez, A.6
-
20
-
-
69949118406
-
Production of bioethanol and other bio-based materials from sugarcane bagasse: Integration to conventional bioethanol production process
-
Dias MO, Ensinas AV, Nebra SA, Maciel R, Rossell CE, Maciel MR (2009) Production of bioethanol and other bio-based materials from sugarcane bagasse: integration to conventional bioethanol production process. Chem Eng Res Des 87: 1206-1216
-
(2009)
Chem Eng Res Des
, vol.87
, pp. 1206-1216
-
-
Dias, M.O.1
Ensinas, A.V.2
Nebra, S.A.3
Maciel, R.4
Rossell, C.E.5
Maciel, M.R.6
-
21
-
-
82455188691
-
Integrated versus stand-alone second generation ethanol production from sugarcane bagasse and trash
-
Dias MO, Junqueira TL, Cavalett O, Cunha MP, Jesus CD, Rossell CE, Maciel Filho R, Bonomi A (2012) Integrated versus stand-alone second generation ethanol production from sugarcane bagasse and trash. Bioresour Technol 103: 152-161
-
(2012)
Bioresour Technol
, vol.103
, pp. 152-161
-
-
Dias, M.O.1
Junqueira, T.L.2
Cavalett, O.3
Cunha, M.P.4
Jesus, C.D.5
Rossell, C.E.6
Maciel Filho, R.7
Bonomi, A.8
-
22
-
-
78049416397
-
Phenolic composition and antioxidant activity of culms and sugarcane (Saccharum officinarum L.) products
-
Duarte-Almeida JM, Salatino A, Genovese MI, Lajolo FM (2011) Phenolic composition and antioxidant activity of culms and sugarcane (Saccharum officinarum L.) products. Food Chem 125: 660-664
-
(2011)
Food Chem
, vol.125
, pp. 660-664
-
-
Duarte-Almeida, J.M.1
Salatino, A.2
Genovese, M.I.3
Lajolo, F.M.4
-
23
-
-
34250346904
-
Changes in the sugarcane metabolome with stem development: Are they related to sucrose accumulation?
-
Glassop D, Roessner U, Bacic A, Bonnett GD (2007) Changes in the sugarcane metabolome with stem development: are they related to sucrose accumulation? Plant Cell Physiol 48: 573-584
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 573-584
-
-
Glassop, D.1
Roessner, U.2
Bacic, A.3
Bonnett, G.D.4
-
24
-
-
18744395820
-
How do lignin composition, structure, and cross-linking affect degradability? A review of cell wall model studies
-
Grabber JH (2005) How do lignin composition, structure, and cross-linking affect degradability? A review of cell wall model studies. Crop Sci 45: 820-831
-
(2005)
Crop Sci
, vol.45
, pp. 820-831
-
-
Grabber, J.H.1
-
25
-
-
2942562629
-
Genetic and molecular basis of grass cell-wall degradability. I. Lignin-cell wall matrix interactions
-
Grabber JH, Ralph J, Lapierre C, Barrière Y (2004) Genetic and molecular basis of grass cell-wall degradability. I. Lignin-cell wall matrix interactions. C R Biol 327: 455-465
-
(2004)
C R Biol
, vol.327
, pp. 455-465
-
-
Grabber, J.H.1
Ralph, J.2
Lapierre, C.3
Barrière, Y.4
-
26
-
-
77953553243
-
Identifying new lignin bioengineering targets. 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability
-
Grabber JH, Schatz PF, Kim H, Lu F, Ralph J (2010) Identifying new lignin bioengineering targets. 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability. BMC Plant Biol 10: 114
-
(2010)
BMC Plant Biol
, vol.10
, pp. 114
-
-
Grabber, J.H.1
Schatz, P.F.2
Kim, H.3
Lu, F.4
Ralph, J.5
-
27
-
-
84857131337
-
Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis
-
Grunewald W, De Smet I, Lewis DR, Löfke C, Jansen L, Goeminne G, Vanden Bossche R, Karimi M, De Rybel B, Vanholme B, et al (2012) Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. Proc Natl Acad Sci USA 109: 1554-1559
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 1554-1559
-
-
Grunewald, W.1
De Smet, I.2
Lewis, D.R.3
Löfke, C.4
Jansen, L.5
Goeminne, G.6
Vanden Bossche, R.7
Karimi, M.8
De Rybel, B.9
Vanholme, B.10
-
28
-
-
33846363288
-
MAIZEWALL: Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize
-
Guillaumie S, San-Clemente H, Deswarte C, Martinez Y, Lapierre C, Murigneux A, Barrière Y, Pichon M, Goffner D (2007) MAIZEWALL: database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize. Plant Physiol 143: 339-363
-
(2007)
Plant Physiol
, vol.143
, pp. 339-363
-
-
Guillaumie, S.1
San-Clemente, H.2
Deswarte, C.3
Martinez, Y.4
Lapierre, C.5
Murigneux, A.6
Barrière, Y.7
Pichon, M.8
Goffner, D.9
-
29
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
30
-
-
84862017123
-
Lignins: Biosynthesis, biodegradation and bioengineering
-
Harrington MJ, Mutwil M, Barrière Y, Sibout R (2012) Lignins: biosynthesis, biodegradation and bioengineering. Adv Bot Res 61: 77-112
-
(2012)
Adv Bot Res
, vol.61
, pp. 77-112
-
-
Harrington, M.J.1
Mutwil, M.2
Barrière, Y.3
Sibout, R.4
-
31
-
-
18744364224
-
Can lignin be accurately measured?
-
Hatfield R, Fukushima RS (2005) Can lignin be accurately measured? Crop Sci 45: 832-839
-
(2005)
Crop Sci
, vol.45
, pp. 832-839
-
-
Hatfield, R.1
Fukushima, R.S.2
-
32
-
-
84988148271
-
A comparison of the insoluble residues produced by the Klason lignin and acid detergent lignin procedures
-
Hatfield RD, Jung HJ, Ralph J, Buxton DR, Weimer PJ (1994) A comparison of the insoluble residues produced by the Klason lignin and acid detergent lignin procedures. J Sci Food Agric 65: 51-58
-
(1994)
J Sci Food Agric
, vol.65
, pp. 51-58
-
-
Hatfield, R.D.1
Jung, H.J.2
Ralph, J.3
Buxton, D.R.4
Weimer, P.J.5
-
33
-
-
84995044801
-
Developmental changes in the anatomy of the sugarcane stem in relation to phloem unloading and sucrose storage
-
Jacobsen KR, Fisher DG, Maretzki A, Moore PH (1992) Developmental changes in the anatomy of the sugarcane stem in relation to phloem unloading and sucrose storage. Bot Acta 105: 70-80
-
(1992)
Bot Acta
, vol.105
, pp. 70-80
-
-
Jacobsen, K.R.1
Fisher, D.G.2
Maretzki, A.3
Moore, P.H.4
-
35
-
-
33746070816
-
Maize stem tissues: Cell wall concentration and composition during development
-
Jung HG, Casler MD (2006) Maize stem tissues: cell wall concentration and composition during development. Crop Sci 46: 1793-1800
-
(2006)
Crop Sci
, vol.46
, pp. 1793-1800
-
-
Jung, H.G.1
Casler, M.D.2
-
36
-
-
84868542137
-
RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass
-
Jung JH, Fouad WM, Vermerris W, Gallo M, Altpeter F (2012) RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass. Plant Biotechnol J 10: 1067-1076
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 1067-1076
-
-
Jung, J.H.1
Fouad, W.M.2
Vermerris, W.3
Gallo, M.4
Altpeter, F.5
-
37
-
-
25444526868
-
Processing methods for differential analysis of LC/MS profile data
-
Katajamaa M, Oresic M (2005) Processing methods for differential analysis of LC/MS profile data. BMC Bioinformatics 6: 179
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 179
-
-
Katajamaa, M.1
Oresic, M.2
-
38
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
39
-
-
84865490603
-
Analysis of soluble lignin in sugarcane by ultrahigh performance liquid chromatography-tandem mass spectrometry with a do-it-yourself oligomer database
-
Kiyota E, Mazzafera P, Sawaya ACHF (2012) Analysis of soluble lignin in sugarcane by ultrahigh performance liquid chromatography-tandem mass spectrometry with a do-it-yourself oligomer database. Anal Chem 84: 7015-7020
-
(2012)
Anal Chem
, vol.84
, pp. 7015-7020
-
-
Kiyota, E.1
Mazzafera, P.2
Sawaya, A.C.H.F.3
-
40
-
-
0028890078
-
Elicitor-induced spruce stress lignin (structural similarity to early developmental lignins)
-
Lange BM, Lapierre C, Sandermann H Jr (1995) Elicitor-induced spruce stress lignin (structural similarity to early developmental lignins). Plant Physiol 108: 1277-1287
-
(1995)
Plant Physiol
, vol.108
, pp. 1277-1287
-
-
Lange, B.M.1
Lapierre, C.2
Sandermann Jr., H.3
-
41
-
-
0002020158
-
Thioacidolysis of spruce lignin: GC-MS analysis of the main dimers recovered after Raney nickel desulphuration
-
Lapierre C, Pollet B, Monties B (1991) Thioacidolysis of spruce lignin: GC-MS analysis of the main dimers recovered after Raney nickel desulphuration. Holzforschung 45: 61-68
-
(1991)
Holzforschung
, vol.45
, pp. 61-68
-
-
Lapierre, C.1
Pollet, B.2
Monties, B.3
-
42
-
-
84857639564
-
Sugarcane internode composition during crop development
-
Lingle SE, Thomson JL (2012) Sugarcane internode composition during crop development. BioEnergy Res 5: 168-178
-
(2012)
BioEnergy Res
, vol.5
, pp. 168-178
-
-
Lingle, S.E.1
Thomson, J.L.2
-
43
-
-
84859082020
-
Bioethanol production from sugarcane and emissions of greenhouse gases: Known and unknowns
-
Lisboa CC, Butterbach-Bahl K, Mauder M, Kiese R (2011) Bioethanol production from sugarcane and emissions of greenhouse gases: known and unknowns. Glob Change Biol Bioenergy 3: 277-292
-
(2011)
Glob Change Biol Bioenergy
, vol.3
, pp. 277-292
-
-
Lisboa, C.C.1
Butterbach-Bahl, K.2
Mauder, M.3
Kiese, R.4
-
45
-
-
79961144992
-
Determination of sugarcane bagasse lignin S/G/H ratio by pyrolysis GC/MS
-
Lopes FJ, Silvério FO, Baffa DC, Loureiro ME, Barbosa MH (2011) Determination of sugarcane bagasse lignin S/G/H ratio by pyrolysis GC/MS. J Wood Chem Technol 31: 309-323
-
(2011)
J Wood Chem Technol
, vol.31
, pp. 309-323
-
-
Lopes, F.J.1
Silvério, F.O.2
Baffa, D.C.3
Loureiro, M.E.4
Barbosa, M.H.5
-
46
-
-
82655186495
-
Chemical composition and enzymatic digestibility of sugarcane clones selected for varied lignin content
-
Masarin F, Gurpilhares DB, Baffa DC, Barbosa MH, Carvalho W, Ferraz A, Milagres AM (2011) Chemical composition and enzymatic digestibility of sugarcane clones selected for varied lignin content. Biotechnol Biofuels 4: 55
-
(2011)
Biotechnol Biofuels
, vol.4
, pp. 55
-
-
Masarin, F.1
Gurpilhares, D.B.2
Baffa, D.C.3
Barbosa, M.H.4
Carvalho, W.5
Ferraz, A.6
Milagres, A.M.7
-
47
-
-
23744475021
-
In search of a maize ideotype for cell wall enzymatic degradability using histological and biochemical lignin characterization
-
Méchin V, Argillier O, Rocher F, Hébert Y, Mila I, Pollet B, Barriére Y, Lapierre C (2005) In search of a maize ideotype for cell wall enzymatic degradability using histological and biochemical lignin characterization. J Agric Food Chem 53: 5872-5881
-
(2005)
J Agric Food Chem
, vol.53
, pp. 5872-5881
-
-
Méchin, V.1
Argillier, O.2
Rocher, F.3
Hébert, Y.4
Mila, I.5
Pollet, B.6
Barriére, Y.7
Lapierre, C.8
-
48
-
-
77952585896
-
Anatomy and morphology
-
In D Heinz, ed, Elsevier, Amsterdam
-
Moore PH (1987) Anatomy and morphology. In D Heinz, ed, Sugarcane Improvement through Breeding. Elsevier, Amsterdam, pp 85-142
-
(1987)
Sugarcane Improvement through Breeding
, pp. 85-142
-
-
Moore, P.H.1
-
49
-
-
77954266539
-
Mass spectrometrybased sequencing of lignin oligomers
-
Morreel K, Dima O, Kim H, Lu F, Niculaes C, Vanholme R, Dauwe R, Goeminne G, Inzé D, Messens E, et al (2010a) Mass spectrometrybased sequencing of lignin oligomers. Plant Physiol 153: 1464-1478
-
(2010)
Plant Physiol
, vol.153
, pp. 1464-1478
-
-
Morreel, K.1
Dima, O.2
Kim, H.3
Lu, F.4
Niculaes, C.5
Vanholme, R.6
Dauwe, R.7
Goeminne, G.8
Inzé, D.9
Messens, E.10
-
50
-
-
77957317857
-
Mass spectrometrybased fragmentation as an identification tool in lignomics
-
Morreel K, Kim H, Lu FC, Dima O, Akiyama T, Vanholme R, Niculaes C, Goeminne G, Inzé D, Messens E, et al (2010b) Mass spectrometrybased fragmentation as an identification tool in lignomics. Anal Chem 82: 8095-8105
-
(2010)
Anal Chem
, vol.82
, pp. 8095-8105
-
-
Morreel, K.1
Kim, H.2
Lu, F.C.3
Dima, O.4
Akiyama, T.5
Vanholme, R.6
Niculaes, C.7
Goeminne, G.8
Inzé, D.9
Messens, E.10
-
51
-
-
8344253178
-
Profiling of oligolignols reveals monolignol coupling conditions in lignifying poplar xylem
-
Morreel K, Ralph J, Kim H, Lu F, Goeminne G, Ralph S, Messens E, Boerjan W (2004) Profiling of oligolignols reveals monolignol coupling conditions in lignifying poplar xylem. Plant Physiol 136: 3537-3549
-
(2004)
Plant Physiol
, vol.136
, pp. 3537-3549
-
-
Morreel, K.1
Ralph, J.2
Kim, H.3
Lu, F.4
Goeminne, G.5
Ralph, S.6
Messens, E.7
Boerjan, W.8
-
53
-
-
77952935279
-
Abiotic and biotic stresses and changes in the lignin content and composition in plants
-
Moura JC, Bonine CA, de Oliveira Fernandes Viana J, Dornelas MC, Mazzafera P (2010) Abiotic and biotic stresses and changes in the lignin content and composition in plants. J Integr Plant Biol 52: 360-376
-
(2010)
J Integr Plant Biol
, vol.52
, pp. 360-376
-
-
Moura, J.C.1
Bonine, C.A.2
de Oliveira Fernandes Viana, J.3
Dornelas, M.C.4
Mazzafera, P.5
-
54
-
-
2542522335
-
Engineering plants with increased levels of the antioxidant chlorogenic acid
-
Niggeweg R, Michael AJ, Martin C (2004) Engineering plants with increased levels of the antioxidant chlorogenic acid. Nat Biotechnol 22: 746-754
-
(2004)
Nat Biotechnol
, vol.22
, pp. 746-754
-
-
Niggeweg, R.1
Michael, A.J.2
Martin, C.3
-
55
-
-
20944440178
-
Transcription profiling of signal transduction-related genes in sugarcane tissues
-
Papini-Terzi FS, Rocha FR, Vêncio RZ, Oliveira KC, Felix JM, Vicentini R, Rocha CS, Simões AC, Ulian EC, di Mauro SM, et al (2005) Transcription profiling of signal transduction-related genes in sugarcane tissues. DNA Res 12: 27-38
-
(2005)
DNA Res
, vol.12
, pp. 27-38
-
-
Papini-Terzi, F.S.1
Rocha, F.R.2
Vêncio, R.Z.3
Oliveira, K.C.4
Felix, J.M.5
Vicentini, R.6
Rocha, C.S.7
Simões, A.C.8
Ulian, E.C.9
di Mauro, S.M.10
-
56
-
-
79960846416
-
Production of bioethanol, methane and heat from sugarcane bagasse in a biorefinery concept
-
Rabelo SC, Carrere H, Maciel Filho R, Costa AC (2011) Production of bioethanol, methane and heat from sugarcane bagasse in a biorefinery concept. Bioresour Technol 102: 7887-7895
-
(2011)
Bioresour Technol
, vol.102
, pp. 7887-7895
-
-
Rabelo, S.C.1
Carrere, H.2
Maciel Filho, R.3
Costa, A.C.4
-
57
-
-
0142035247
-
Genome-wide characterization of the lignification toolbox in Arabidopsis
-
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol 133: 1051-1071
-
(2003)
Plant Physiol
, vol.133
, pp. 1051-1071
-
-
Raes, J.1
Rohde, A.2
Christensen, J.H.3
Van de Peer, Y.4
Boerjan, W.5
-
58
-
-
77949914660
-
Hydroxycinnamates in lignification
-
Ralph J (2010) Hydroxycinnamates in lignification. Phytochem Rev 9: 65-83
-
(2010)
Phytochem Rev
, vol.9
, pp. 65-83
-
-
Ralph, J.1
-
59
-
-
6344288191
-
Lignins: Natural polymers from oxidative coupling of 4-hydroxy phenyl propanoids
-
Ralph J, Lundquist K, Brunow G, Lu F, Kim H, Schatz PF, Marita JM, Hatfield RD, Ralph SA, Christensen JH, et al (2004) Lignins: natural polymers from oxidative coupling of 4-hydroxy phenyl propanoids. Phytochem Rev 3: 29-60
-
(2004)
Phytochem Rev
, vol.3
, pp. 29-60
-
-
Ralph, J.1
Lundquist, K.2
Brunow, G.3
Lu, F.4
Kim, H.5
Schatz, P.F.6
Marita, J.M.7
Hatfield, R.D.8
Ralph, S.A.9
Christensen, J.H.10
-
60
-
-
0035739091
-
Sugarcane expressed sequences tags (ESTs) encoding enzymes involved in lignin biosynthesis pathways
-
Ramos RL, Tovar FJ, Junqueira RM, Lino FB, Sachetto-Martins G (2001) Sugarcane expressed sequences tags (ESTs) encoding enzymes involved in lignin biosynthesis pathways. Genet Mol Biol 24: 235-241
-
(2001)
Genet Mol Biol
, vol.24
, pp. 235-241
-
-
Ramos, R.L.1
Tovar, F.J.2
Junqueira, R.M.3
Lino, F.B.4
Sachetto-Martins, G.5
-
61
-
-
82155168543
-
Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility
-
Rezende CA, de Lima MA, Maziero P, Deazevedo ER, Garcia W, Polikarpov I (2011) Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility. Biotechnol Biofuels 4: 54
-
(2011)
Biotechnol Biofuels
, vol.4
, pp. 54
-
-
Rezende, C.A.1
de Lima, M.A.2
Maziero, P.3
Deazevedo, E.R.4
Garcia, W.5
Polikarpov, I.6
-
62
-
-
59249091403
-
Kinetics of phenylpropanoid gene expression in maize growing internodes: Relationships with cell wall deposition
-
Riboulet C, Guillaumie S, Mechin V, Bosio M, Pichon M, Goffner D, Lapierre C, Pollet B, Lefevre B, Martinant JP, et al (2009) Kinetics of phenylpropanoid gene expression in maize growing internodes: relationships with cell wall deposition. Crop Sci 49: 211-223
-
(2009)
Crop Sci
, vol.49
, pp. 211-223
-
-
Riboulet, C.1
Guillaumie, S.2
Mechin, V.3
Bosio, M.4
Pichon, M.5
Goffner, D.6
Lapierre, C.7
Pollet, B.8
Lefevre, B.9
Martinant, J.P.10
-
63
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
64
-
-
70449592008
-
Developmental control of lignification in stems of lowland switchgrass variety Alamo and the effects on saccharification efficiency
-
Shen H, Fu C, Xiao X, Ray T, Tang Y, Wang Z, Chen F (2009) Developmental control of lignification in stems of lowland switchgrass variety Alamo and the effects on saccharification efficiency. BioEnergy Res 2: 233-245
-
(2009)
BioEnergy Res
, vol.2
, pp. 233-245
-
-
Shen, H.1
Fu, C.2
Xiao, X.3
Ray, T.4
Tang, Y.5
Wang, Z.6
Chen, F.7
-
65
-
-
74549176584
-
Towards a systems approach for lignin biosynthesis in Populus trichocarpa: Transcript abundance and specificity of the monolignol biosynthetic genes
-
Shi R, Sun YH, Li Q, Heber S, Sederoff R, Chiang VL (2010) Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Plant Cell Physiol 51: 144-163
-
(2010)
Plant Cell Physiol
, vol.51
, pp. 144-163
-
-
Shi, R.1
Sun, Y.H.2
Li, Q.3
Heber, S.4
Sederoff, R.5
Chiang, V.L.6
-
66
-
-
77955898246
-
Advances in modifying lignin for enhanced biofuel production
-
Simmons BA, Loqué D, Ralph J (2010) Advances in modifying lignin for enhanced biofuel production. Curr Opin Plant Biol 13: 313-320
-
(2010)
Curr Opin Plant Biol
, vol.13
, pp. 313-320
-
-
Simmons, B.A.1
Loqué, D.2
Ralph, J.3
-
67
-
-
79952707266
-
Topochemical distribution of lignin and hydroxycinnamic acids in sugar-cane cell walls and its correlation with the enzymatic hydrolysis of polysaccharides
-
Siqueira G, Milagres AM, Carvalho W, Koch G, Ferraz A (2011) Topochemical distribution of lignin and hydroxycinnamic acids in sugar-cane cell walls and its correlation with the enzymatic hydrolysis of polysaccharides. Biotechnol Biofuels 4: 7
-
(2011)
Biotechnol Biofuels
, vol.4
, pp. 7
-
-
Siqueira, G.1
Milagres, A.M.2
Carvalho, W.3
Koch, G.4
Ferraz, A.5
-
68
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-432
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
69
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey JD (2002) A direct approach to false discovery rates. J R Stat Soc B 64: 479-498
-
(2002)
J R Stat Soc B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
70
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
71
-
-
84876691737
-
Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana
-
Van Acker R, Vanholme R, Storme V, Mortimer JC, Dupree P, Boerjan W (2013) Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana. Biotechnol Biofuels 6: 46
-
(2013)
Biotechnol Biofuels
, vol.6
, pp. 46
-
-
Van Acker, R.1
Vanholme, R.2
Storme, V.3
Mortimer, J.C.4
Dupree, P.5
Boerjan, W.6
-
72
-
-
84888872669
-
Towards a carbon-negative sustainable bio-based economy
-
Vanholme B, Desmet T, Ronsse F, Rabaey K, Breusegem FV, Mey MD, Soetaert W, Boerjan W (2013a) Towards a carbon-negative sustainable bio-based economy. Front Plant Sci 4: 174
-
(2013)
Front Plant Sci
, vol.4
, pp. 174
-
-
Vanholme, B.1
Desmet, T.2
Ronsse, F.3
Rabaey, K.4
Breusegem, F.V.5
Mey, M.D.6
Soetaert, W.7
Boerjan, W.8
-
73
-
-
84883489184
-
Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis
-
Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P, et al (2013b) Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis. Science 341: 1103-1106
-
(2013)
Science
, vol.341
, pp. 1103-1106
-
-
Vanholme, R.1
Cesarino, I.2
Rataj, K.3
Xiao, Y.4
Sundin, L.5
Goeminne, G.6
Kim, H.7
Cross, J.8
Morreel, K.9
Araujo, P.10
-
74
-
-
77954257815
-
Lignin biosynthesis and structure
-
Vanholme R, Demedts B, Morreel K, Ralph J, Boerjan W (2010a) Lignin biosynthesis and structure. Plant Physiol 153: 895-905
-
(2010)
Plant Physiol
, vol.153
, pp. 895-905
-
-
Vanholme, R.1
Demedts, B.2
Morreel, K.3
Ralph, J.4
Boerjan, W.5
-
75
-
-
78650132635
-
Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis
-
Vanholme R, Ralph J, Akiyama T, Lu F, Pazo JR, Kim H, Christensen JH, Van Reusel B, Storme V, De Rycke R, et al (2010b) Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis. Plant J 64: 885-897
-
(2010)
Plant J
, vol.64
, pp. 885-897
-
-
Vanholme, R.1
Ralph, J.2
Akiyama, T.3
Lu, F.4
Pazo, J.R.5
Kim, H.6
Christensen, J.H.7
Van Reusel, B.8
Storme, V.9
De Rycke, R.10
-
76
-
-
77957766551
-
Potential of Arabidopsis systems biology to advance the biofuel field
-
Vanholme R, Van Acker R, Boerjan W (2010c) Potential of Arabidopsis systems biology to advance the biofuel field. Trends Biotechnol 28: 543-547
-
(2010)
Trends Biotechnol
, vol.28
, pp. 543-547
-
-
Vanholme, R.1
Van Acker, R.2
Boerjan, W.3
-
77
-
-
0001761240
-
Development of a comprehensive system of feed analysis and its application to forage
-
Van Soest PJ (1967) Development of a comprehensive system of feed analysis and its application to forage. J Anim Sci 26: 119-120
-
(1967)
J Anim Sci
, vol.26
, pp. 119-120
-
-
Van Soest, P.J.1
-
78
-
-
77952744343
-
Genetic and biotechnological approaches for biofuel crop improvement
-
Vega-Sánchez ME, Ronald PC (2010) Genetic and biotechnological approaches for biofuel crop improvement. Curr Opin Biotechnol 21: 218-224
-
(2010)
Curr Opin Biotechnol
, vol.21
, pp. 218-224
-
-
Vega-Sánchez, M.E.1
Ronald, P.C.2
-
79
-
-
43849088205
-
Unique aspects of the grass cell wall
-
Vogel J (2008) Unique aspects of the grass cell wall. Curr Opin Plant Biol 11: 301-307
-
(2008)
Curr Opin Plant Biol
, vol.11
, pp. 301-307
-
-
Vogel, J.1
-
80
-
-
42249110184
-
Emerging strategies of lignin engineering and degradation for cellulosic biofuel production
-
Weng JK, Li X, Bonawitz ND, Chapple C (2008) Emerging strategies of lignin engineering and degradation for cellulosic biofuel production. Curr Opin Biotechnol 19: 166-172
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 166-172
-
-
Weng, J.K.1
Li, X.2
Bonawitz, N.D.3
Chapple, C.4
-
81
-
-
14544293618
-
Flavonolignans from Avena sativa
-
Wenzig E, Kunert O, Ferreira D, Schmid M, Schühly W, Bauer R, Hiermann A (2005) Flavonolignans from Avena sativa. J Nat Prod 68: 289-292
-
(2005)
J Nat Prod
, vol.68
, pp. 289-292
-
-
Wenzig, E.1
Kunert, O.2
Ferreira, D.3
Schmid, M.4
Schühly, W.5
Bauer, R.6
Hiermann, A.7
-
82
-
-
58349093534
-
BNFinder: Exact and efficient method for learning Bayesian networks
-
Wilczyński B, Dojer N (2009) BNFinder: exact and efficient method for learning Bayesian networks. Bioinformatics 25: 286-287
-
(2009)
Bioinformatics
, vol.25
, pp. 286-287
-
-
Wilczyński, B.1
Dojer, N.2
-
83
-
-
78649850838
-
Increase in 4-coumaryl alcohol units during lignification in alfalfa (Medicago sativa) alters the extractability and molecular weight of lignin
-
Ziebell A, Gracom K, Katahira R, Chen F, Pu Y, Ragauskas A, Dixon RA, Davis M (2010) Increase in 4-coumaryl alcohol units during lignification in alfalfa (Medicago sativa) alters the extractability and molecular weight of lignin. J Biol Chem 285: 38961-38968
-
(2010)
J Biol Chem
, vol.285
, pp. 38961-38968
-
-
Ziebell, A.1
Gracom, K.2
Katahira, R.3
Chen, F.4
Pu, Y.5
Ragauskas, A.6
Dixon, R.A.7
Davis, M.8
|