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Volumn 40, Issue 6, 2012, Pages 2712-2723

Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; NUCLEIC ACID BASE; PENTATRICOPEPTIDE REPEAT PROTEIN; UNCLASSIFIED DRUG;

EID: 84859330674     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1084     Document Type: Article
Times cited : (45)

References (41)
  • 1
    • 0034443285 scopus 로고    scopus 로고
    • Origin and evolution of the mitochondrial proteome
    • DOI 10.1128/MMBR.64.4.786-820.2000
    • Kurland, C.G. and Andersson, S.G. (2000) Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev., 64, 786-820 (Pubitemid 32475931)
    • (2000) Microbiology and Molecular Biology Reviews , vol.64 , Issue.4 , pp. 786-820
    • Kurland, C.G.1    Andersson, S.G.E.2
  • 2
    • 36849004368 scopus 로고    scopus 로고
    • How do endosymbionts become organelles? Understanding early events in plastid evolution
    • DOI 10.1002/bies.20671
    • Bhattacharya, D., Archibald, J.M., Weber, A.P. and Reyes-Prieto, A. (2007) How do endosymbionts become organelleS̈Understanding early events in plastid evolution. BioEssays, 29, 1239-1246 (Pubitemid 350221792)
    • (2007) BioEssays , vol.29 , Issue.12 , pp. 1239-1246
    • Bhattacharya, D.1    Archibald, J.M.2    Weber, A.P.M.3    Reyes-Prieto, A.4
  • 3
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif - A TPR-related motif prevalent in plant organellar proteins
    • PII S0968000499015200
    • Small, I.D. and Peeters, N. (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci., 25, 46-47 (Pubitemid 30100363)
    • (2000) Trends in Biochemical Sciences , vol.25 , Issue.2 , pp. 46-47
    • Small, I.D.1    Peeters, N.2
  • 4
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber, C. and Small, I. (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci., 13, 663-670
    • (2008) Trends Plant Sci. , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 8
    • 20444412435 scopus 로고    scopus 로고
    • Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis
    • DOI 10.1007/s00425-004-1452-x
    • Cushing, D.A., Forsthoefel, N.R., Gestaut, D.R. and Vernon, D.M. (2005) Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Planta, 221, 424-436 (Pubitemid 40876637)
    • (2005) Planta , vol.221 , Issue.3 , pp. 424-436
    • Cushing, D.A.1    Forsthoefel, N.R.2    Gestaut, D.R.3    Vernon, D.M.4
  • 9
    • 33846470605 scopus 로고    scopus 로고
    • Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions
    • DOI 10.1016/j.tig.2006.12.004, PII S0168952506004070
    • Chase, C.D. (2007) Cytoplasmic male sterility: a window to the world of plant mitochondrial-nuclear interactions. Trends Genet., 23, 81-90 (Pubitemid 46161215)
    • (2007) Trends in Genetics , vol.23 , Issue.2 , pp. 81-90
    • Chase, C.D.1
  • 11
    • 33847211810 scopus 로고    scopus 로고
    • LOVASTATIN INSENSITIVE 1, a novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis
    • Kobayashi, K., Suzuki, M., Tang, J., Nagata, N., Ohyama, K., Seki, H., Kiuchi, R., Kaneko, Y., Nakazawa, M., Matsui, M. et al. (2007) LOVASTATIN INSENSITIVE 1, a novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis. Plant Cell Physiol., 48, 322-331
    • (2007) Plant Cell Physiol. , vol.48 , pp. 322-331
    • Kobayashi, K.1    Suzuki, M.2    Tang, J.3    Nagata, N.4    Ohyama, K.5    Seki, H.6    Kiuchi, R.7    Kaneko, Y.8    Nakazawa, M.9    Matsui, M.10
  • 12
    • 12744253474 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
    • Kotera, E., Tasaka, M. and Shikanai, T. (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature, 433, 326-330
    • (2005) Nature , vol.433 , pp. 326-330
    • Kotera, E.1    Tasaka, M.2    Shikanai, T.3
  • 13
    • 33750967640 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA
    • DOI 10.1105/tpc.106.046110
    • Schmitz-Linneweber, C., Williams-Carrier, R.E., Williams-Voelker, P.M., Kroeger, T.S., Vichas, A. and Barkan, A. (2006) A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell, 18, 2650-2663 (Pubitemid 44749895)
    • (2006) Plant Cell , vol.18 , Issue.10 , pp. 2650-2663
    • Schmitz-Linneweber, C.1    Williams-Carrier, R.E.2    Williams-Voelker, P.M.3    Kroeger, T.S.4    Vichas, A.5    Barkan, A.6
  • 15
    • 67651171227 scopus 로고    scopus 로고
    • Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts
    • Pfalz, J., Bayraktar, O.A., Prikryl, J. and Barkan, A. (2009) Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts. EMBO J., 28, 2042-2052
    • (2009) EMBO J. , vol.28 , pp. 2042-2052
    • Pfalz, J.1    Bayraktar, O.A.2    Prikryl, J.3    Barkan, A.4
  • 16
    • 1842483066 scopus 로고    scopus 로고
    • PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis
    • DOI 10.1111/j.1365-313X.2004.02035.x
    • Yamazaki, H., Tasaka, M. and Shikanai, T. (2004) PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis. Plant J., 38, 152-163 (Pubitemid 38448452)
    • (2004) Plant Journal , vol.38 , Issue.1 , pp. 152-163
    • Yamazaki, H.1    Tasaka, M.2    Shikanai, T.3
  • 17
    • 0142088891 scopus 로고    scopus 로고
    • RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA
    • DOI 10.1046/j.1432-1033.2003.03796.x
    • Nakamura, T., Meierhoff, K., Westhoff, P. and Schuster, G. (2003) RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA. Eur. J. Biochem., 270, 4070-4081 (Pubitemid 37281624)
    • (2003) European Journal of Biochemistry , vol.270 , Issue.20 , pp. 4070-4081
    • Nakamura, T.1    Meierhoff, K.2    Westhoff, P.3    Schuster, G.4
  • 18
    • 33845986746 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing
    • DOI 10.1074/jbc.M608184200
    • Okuda, K., Nakamura, T., Sugita, M., Shimizu, T. and Shikanai, T. (2006) A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J. Biol. Chem., 281, 37661-37667 (Pubitemid 46042069)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.49 , pp. 37661-37667
    • Okuda, K.1    Nakamura, T.2    Sugita, M.3    Shimizu, T.4    Shikanai, T.5
  • 19
    • 79958748899 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria
    • Hammani, K., Colas des Francs-Small, C., Takenaka, M., Tanz, S.K., Okuda, K., Shikanai, T., Brennicke, A. and Small, I. (2011) The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. J. Biol. Chem., 286, 21361-21371
    • (2011) J. Biol. Chem. , vol.286 , pp. 21361-21371
    • Hammani, K.1    Colas Des Francs-Small, C.2    Takenaka, M.3    Tanz, S.K.4    Okuda, K.5    Shikanai, T.6    Brennicke, A.7    Small, I.8
  • 20
    • 78651068887 scopus 로고    scopus 로고
    • Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
    • Prikryl, J., Rojas, M., Schuster, G. and Barkan, A. (2011) Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc. Natl. Acad. Sci. USA, 108, 415-420
    • (2011) Proc. Natl. Acad. Sci. USA , Issue.108 , pp. 415-420
    • Prikryl, J.1    Rojas, M.2    Schuster, G.3    Barkan, A.4
  • 21
    • 31544432771 scopus 로고    scopus 로고
    • RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates
    • Schmitz-Linneweber, C., Williams-Carrier, R. and Barkan, A. (2005) RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell, 17, 2791-2804
    • (2005) Plant Cell , vol.17 , pp. 2791-2804
    • Schmitz-Linneweber, C.1    Williams-Carrier, R.2    Barkan, A.3
  • 22
    • 50249171238 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts
    • Beick, S., Schmitz-Linneweber, C., Williams-Carrier, R., Jensen, B. and Barkan, A. (2008) The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol. Cel. Biol., 28, 5337-5347
    • (2008) Mol. Cel. Biol. , vol.28 , pp. 5337-5347
    • Beick, S.1    Schmitz-Linneweber, C.2    Williams-Carrier, R.3    Jensen, B.4    Barkan, A.5
  • 24
    • 50649095496 scopus 로고    scopus 로고
    • Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
    • Williams-Carrier, R., Kroeger, T. and Barkan, A. (2008) Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. RNA, 14, 1930-1941
    • (2008) RNA , vol.14 , pp. 1930-1941
    • Williams-Carrier, R.1    Kroeger, T.2    Barkan, A.3
  • 25
    • 37749036789 scopus 로고    scopus 로고
    • Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles
    • Delannoy, E., Stanley, W.A., Bond, C.S. and Small, I.D. (2007) Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Biochem. Soc. Trans., 35, 1643-1647
    • (2007) Biochem. Soc. Trans. , vol.35 , pp. 1643-1647
    • Delannoy, E.1    Stanley, W.A.2    Bond, C.S.3    Small, I.D.4
  • 26
    • 2642512446 scopus 로고    scopus 로고
    • Genetics and genomics of chloroplast biogenesis: Maize as a model system
    • DOI 10.1016/j.tplants.2004.04.001, PII S1360138504000986
    • Stern, D.B., Hanson, M.R. and Barkan, A. (2004) Genetics and genomics of chloroplast biogenesis: maize as a model system. Trends Plant Sci., 9, 293-301 (Pubitemid 38708851)
    • (2004) Trends in Plant Science , vol.9 , Issue.6 , pp. 293-301
    • Stern, D.B.1    Hanson, M.R.2    Barkan, A.3
  • 27
    • 79952166885 scopus 로고    scopus 로고
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
    • Fujii, S., Bond, C.S. and Small, I.D. (2011) Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc. Natl. Acad. Sci. USA, 108, 1723-1728
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 1723-1728
    • Fujii, S.1    Bond, C.S.2    Small, I.D.3
  • 28
    • 0038457836 scopus 로고    scopus 로고
    • HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs
    • Meierhoff, K., Felder, S., Nakamura, T., Bechtold, N. and Schuster, G. (2003) HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Plant Cell, 15, 1480-1495 (Pubitemid 36715187)
    • (2003) Plant Cell , vol.15 , Issue.6 , pp. 1480-1495
    • Meierhoff, K.1    Felder, S.2    Nakamura, T.3    Bechtold, N.4    Schuster, G.5
  • 29
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
    • Kazama, T., Nakamura, T., Watanabe, M., Sugita, M. and Toriyama, K. (2008) Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J., 55, 619-628
    • (2008) Plant J. , vol.55 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 30
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley, L.A. and Sternberg, M.J. (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc., 4, 363-371
    • (2009) Nat. Protoc. , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 31
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 35
    • 34047269428 scopus 로고    scopus 로고
    • The Structure of the C-Terminal KH Domains of KSRP Reveals a Noncanonical Motif Important for mRNA Degradation
    • DOI 10.1016/j.str.2007.03.006, PII S096921260700113X
    • Garcia-Mayoral, M.F., Hollingworth, D., Masino, L., Diaz-Moreno, I., Kelly, G., Gherzi, R., Chou, C.F., Chen, C.Y. and Ramos, A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure, 15, 485-498 (Pubitemid 46551731)
    • (2007) Structure , vol.15 , Issue.4 , pp. 485-498
    • Garcia-Mayoral, M.F.1    Hollingworth, D.2    Masino, L.3    Diaz-Moreno, I.4    Kelly, G.5    Gherzi, R.6    Chou, C.-F.7    Chen, C.-Y.8    Ramos, A.9
  • 37
    • 0034923498 scopus 로고    scopus 로고
    • 2 zinc finger proteins
    • DOI 10.1146/annurev.biochem.70.1.313
    • Pabo, C.O., Peisach, E. and Grant, R.A. (2001) Design and selection of novel Cys2His2 zinc finger proteins. Annu. Rev. Biochem., 70, 313-340 (Pubitemid 32662213)
    • (2001) Annual Review of Biochemistry , vol.70 , pp. 313-340
    • Pabo, C.O.1    Peisach, E.2    Grant, R.A.3
  • 38
    • 70349492910 scopus 로고    scopus 로고
    • A moss pentatricopeptide repeat protein binds to the 30-end of plastid clpP pre-mRNA and assists with mRNA maturation
    • Hattori, M. and Sugita, M. (2009) A moss pentatricopeptide repeat protein binds to the 30-end of plastid clpP pre-mRNA and assists with mRNA maturation. FEBS J., 276, 5860-5869
    • (2009) FEBS J. , vol.276 , pp. 5860-5869
    • Hattori, M.1    Sugita, M.2
  • 39
  • 40
    • 80053201287 scopus 로고    scopus 로고
    • Revisiting the Yeast PPR Proteins-Application of an Iterative Hidden Markov Model Algorithm Reveals New Members of the Rapidly Evolving Family
    • Lipinski, K.A., Puchta, O., Surandranath, V., Kudla, M. and Golik, P. (2011) Revisiting the Yeast PPR Proteins-Application of an Iterative Hidden Markov Model Algorithm Reveals New Members of the Rapidly Evolving Family. Mol. Biol. Evol., 10, 2935-2948
    • (2011) Mol. Biol. Evol. , Issue.10 , pp. 2935-2948
    • Lipinski, K.A.1    Puchta, O.2    Surandranath, V.3    Kudla, M.4    Golik, P.5
  • 41
    • 73249140998 scopus 로고    scopus 로고
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • Hammani, K., Okuda, K., Tanz, S.K., Chateigner-Boutin, A.L., Shikanai, T. and Small, I. (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell, 21, 3686-3699.
    • (2009) Plant Cell , vol.21 , pp. 3686-3699
    • Hammani, K.1    Okuda, K.2    Tanz, S.K.3    Chateigner-Boutin, A.L.4    Shikanai, T.5    Small, I.6


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