-
1
-
-
0019423856
-
Sequence and organization of the human mitochondrial genome
-
14 co-authors
-
Anderson S, Bankier AT, Barrell BG, et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
-
(1981)
Nature
, vol.290
, pp. 457-465
-
-
Anderson, S.1
Bankier, A.T.2
Barrell, B.G.3
-
2
-
-
0019192296
-
The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria
-
Arcari P, Brownlee GG. 1980. The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria. Nucleic Acids Res. 8:5207-5212.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 5207-5212
-
-
Arcari, P.1
Brownlee, G.G.2
-
3
-
-
0037062433
-
Mammalian mitogenomic relationships and the root of the eutherian tree
-
U S A
-
Arnason U, Adegoke JA, Bodin K, Born EW, Esa YB, Gullberg A, Nilsson M, Short RV, Xu X, Janke A. 2002. Mammalian mitogenomic relationships and the root of the eutherian tree. Proc Natl Acad Sci. U S A. 99:8151-8156.
-
(2002)
Proc Natl Acad Sci.
, vol.99
, pp. 8151-8156
-
-
Arnason, U.1
Adegoke, J.A.2
Bodin, K.3
Born, E.W.4
Esa, Y.B.5
Gullberg, A.6
Nilsson, M.7
Short, R.V.8
Xu, X.9
Janke, A.10
-
4
-
-
80053651587
-
Genbank
-
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. 2013. GenBank. Nucleic Acids Res. 41: D36-D42.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
5
-
-
84883454605
-
MITOS: Improved de novo metazoan mitochondrial genome annotation
-
Forthcoming
-
Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. Forthcoming 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313-319.
-
(2013)
Mol Phylogenet Evol.
, vol.69
, pp. 313-319
-
-
Bernt, M.1
Donath, A.2
Juhling, F.3
Externbrink, F.4
Florentz, C.5
Fritzsch, G.6
Putz, J.7
Middendorf, M.8
Stadler, P.F.9
-
6
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27: 1767-1780.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
7
-
-
74049108922
-
BLAST+ : Architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+ : Architecture and applications. BMC Bioinformatics 10:421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
8
-
-
84862177773
-
MitoZoa 2.0: A database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa
-
D'Onorio de Meo P, D'Antonio M, Griggio F, Lupi R, Borsani M, Pavesi G, Castrignano T, Pesole G, Gissi C. 2012. MitoZoa 2.0: A database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa. Nucleic Acids Res. 40: D1168-D1172.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
D'onorio, D.M.P.1
D'antonio, M.2
Griggio, F.3
Lupi, R.4
Borsani, M.5
Pavesi, G.6
Castrignano, T.7
Pesole, G.8
Gissi, C.9
-
9
-
-
0019198062
-
A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem
-
de Bruijn MH, Schreier PH, Eperon IC, Barrell BG, Chen EY, Armstrong PW, Wong JF, Roe BA. 1980. A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem. Nucleic Acids Res. 8:5213-5222.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 5213-5222
-
-
De Bruijn, M.H.1
Schreier, P.H.2
Eperon, I.C.3
Barrell, B.G.4
Chen, E.Y.5
Armstrong, P.W.6
Wong, J.F.7
Roe, B.A.8
-
10
-
-
0025884174
-
Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome
-
Desjardins P, Morais R. 1991. Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome. J Mol Evol. 32:153-161.
-
(1991)
J Mol Evol
, vol.32
, pp. 153-161
-
-
Desjardins, P.1
Morais, R.2
-
12
-
-
0004048250
-
-
editors. World Wide Web electronic publication. [cited 2013 August 28], version (04/2013
-
Froese R, Pauly D, editors. 2013. FishBase. World Wide Web electronic publication. [cited 2013 August 28] www.fishbase.org, version (04/2013).
-
(2013)
FishBase
-
-
Froese, R.1
Pauly, D.2
-
13
-
-
52549130466
-
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
-
Gissi C, Iannelli F, Pesole G. 2008. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 101:301-320.
-
(2008)
Heredity
, vol.101
, pp. 301-320
-
-
Gissi, C.1
Iannelli, F.2
Pesole, G.3
-
14
-
-
12244307474
-
Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the "ancient fish
-
Inoue JG, Miya M, Tsukamoto K, Nishida M. 2003a. Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol. 26:110-120.
-
(2003)
Mol Phylogenet Evol.
, vol.26
, pp. 110-120
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
15
-
-
0242414574
-
Evolution of the deep-sea gulper eel mitochondrial genomes: Large-scale gene rearrangements originated within the eels
-
Inoue JG, Miya M, Tsukamoto K, Nishida M. 2003b. Evolution of the deep-sea gulper eel mitochondrial genomes: large-scale gene rearrangements originated within the eels. Mol Biol Evol. 20:1917-1924.
-
(2003)
Mol Biol Evol.
, vol.20
, pp. 1917-1924
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
16
-
-
84858292395
-
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
-
Juhling F, Putz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. 2012. Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Res. 40:2833-2845.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2833-2845
-
-
Juhling, F.1
Putz, J.2
Bernt, M.3
Donath, A.4
Middendorf, M.5
Florentz, C.6
Stadler, P.F.7
-
17
-
-
38349180130
-
ARWEN: A program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
-
Laslett D, Canback B. 2008. ARWEN: A program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 24: 172-175.
-
(2008)
Bioinformatics
, vol.24
, pp. 172-175
-
-
Laslett, D.1
Canback, B.2
-
18
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
19
-
-
4344581098
-
Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae
-
Mabuchi K, Miya M, Satoh TP, Westneat MW, Nishida M. 2004. Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae). J Mol Evol. 59:287-297.
-
(2004)
J Mol Evol.
, vol.59
, pp. 287-297
-
-
Mabuchi, K.1
Miya, M.2
Satoh, T.P.3
Westneat, M.W.4
Nishida, M.5
-
20
-
-
0033191527
-
Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes
-
Miya M, Nishida M. 1999. Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Marine Biotechnol. 1:416-426.
-
(1999)
Marine Biotechnol.
, vol.1
, pp. 416-426
-
-
Miya, M.1
Nishida, M.2
-
21
-
-
0034497887
-
Use ofmitogenomic information in teleostean molecular phylogenetics: A tree-based exploration under the maximum- parsimony optimality criterion
-
Miya M, NishidaM. 2000. Use ofmitogenomic information in teleostean molecular phylogenetics: A tree-based exploration under the maximum- parsimony optimality criterion. Mol Phylogenet Evol. 17: 437-455.
-
(2000)
Mol Phylogenet Evol.
, vol.17
, pp. 437-455
-
-
Miya, M.1
Nishidam2
-
22
-
-
0037215848
-
Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences
-
12 co-authros
-
Miya M, Takeshima H, Endo H, et al. (12 co-authros). 2003. Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol. 26:121-138.
-
(2003)
Mol Phylogenet Evol.
, vol.26
, pp. 121-138
-
-
Miya, M.1
Takeshima, H.2
Endo, H.3
-
23
-
-
84883356664
-
Volutionary origin of the scombridae (Tunas and Mackerels): Members of a paleogene adaptive radiation with 14 other pelagic fish familiess
-
14 co-authros). Forthcoming
-
Miya M, Friedman M, Satoh TP, et al. (14 co-authros). Forthcoming 2013. Volutionary origin of the scombridae (Tunas and Mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish familiess. PLOS ONE.
-
(2013)
PLOS ONE
-
-
Miya, M.1
Friedman, M.2
Satoh, T.P.3
-
26
-
-
58149194601
-
GOBASE: An organelle genome database
-
O'Brien EA, Zhang Y, Wang E, Marie V, Badejoko W, Lang BF, Burger G. 2009. GOBASE: An organelle genome database. Nucleic Acids Res. 37: D946-D950.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
O'brien, E.A.1
Zhang, Y.2
Wang, E.3
Marie, V.4
Badejoko, W.5
Lang, B.F.6
Burger, G.7
-
27
-
-
0019124439
-
The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA
-
Ojala D, Merkel C, Gelfand R, Attardi G. 1980. The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA. Cell 22:393-403.
-
(1980)
Cell
, vol.22
, pp. 393-403
-
-
Ojala, D.1
Merkel, C.2
Gelfand, R.3
Attardi, G.4
-
28
-
-
0024462773
-
Evolution of the mitochondrial genetic code. I. Origin of AGR serine and stop codons in metazoan mitochondria
-
Osawa S, Ohama T, Jukes TH, Watanabe K. 1989. Evolution of the mitochondrial genetic code. I. Origin of AGR serine and stop codons in metazoan mitochondria. J Mol Evol. 29:202-207.
-
(1989)
J Mol Evol.
, vol.29
, pp. 202-207
-
-
Osawa, S.1
Ohama, T.2
Jukes, T.H.3
Watanabe, K.4
-
29
-
-
79957516618
-
Evolution of modern birds revealed by mitogenomics: Timing the radiation and origin of major orders
-
Pacheco MA, Battistuzzi FU, Lentino M, Aguilar RF, Kumar S, Escalante AA. 2011. Evolution of modern birds revealed by mitogenomics: Timing the radiation and origin of major orders. Mol Biol Evol. 28: 1927-1942.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 1927-1942
-
-
Pacheco, M.A.1
Battistuzzi, F.U.2
Lentino, M.3
Aguilar, R.F.4
Kumar, S.5
Escalante, A.A.6
-
30
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. 2012. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40:D130-D135.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
32
-
-
34248149943
-
Bold: The barcode of life data system
-
Ratnasingham S, Hebert PD. 2007. bold: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol Notes. 7:355-364.
-
(2007)
Mol Ecol Notes
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.2
-
33
-
-
78651376577
-
Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination
-
Sammler S, Bleidorn C, Tiedemann R. 2011. Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination. BMC Genomics 12:35.
-
(2011)
BMC Genomics
, vol.12
, pp. 35
-
-
Sammler, S.1
Bleidorn, C.2
Tiedemann, R.3
-
35
-
-
21144441123
-
MamMiBase: A mitochondrial genome database for mammalian phylogenetic studies
-
23 co-authors
-
Vasconcelos AT, Guimaraes AC, Castelletti CH, et al. (23 co-authors). 2005. MamMiBase: A mitochondrial genome database for mammalian phylogenetic studies. Bioinformatics 21:2566-2567.
-
(2005)
Bioinformatics
, vol.21
, pp. 2566-2567
-
-
Vasconcelos, A.T.1
Guimaraes, A.C.2
Castelletti, C.H.3
-
36
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
-
(2004)
Bioinformatics
, vol.20
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
|