메뉴 건너뛰기




Volumn 40, Issue D1, 2012, Pages

MitoZoa 2.0: A database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa

Author keywords

[No Author keywords available]

Indexed keywords

ANILIUS SCYTALE; ARTICLE; DNA SEQUENCE; GASTROPOD; GENETIC DATABASE; ILYANASSA OBSOLETA; INTRON; METAGENOMICS; MITOCHONDRIAL GENOME; MITOCHONDRIAL GENOME DATABASE OF METAZOA 2.0; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLATEVINDEX MORTONI; PRIORITY JOURNAL; PROTEIN MODIFICATION; PROTEIN PROCESSING; RIBOSOMAL FRAMESHIFTING; SNAKE; TAXONOMY;

EID: 84862177773     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1144     Document Type: Article
Times cited : (44)

References (35)
  • 1
    • 52549130466 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
    • Gissi,C., Iannelli,F. and Pesole,G. (2008) Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity, 101, 301-320.
    • (2008) Heredity , vol.101 , pp. 301-320
    • Gissi, C.1    Iannelli, F.2    Pesole, G.3
  • 2
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • DOI 10.1038/290457a0
    • Anderson,S., Bankier,A.T., Barrell,B.G., de Bruijn,M.H., Coulson,A.R., Drouin,J., Eperon,I.C., Nierlich,D.P., Roe,B.A., Sanger,F. et al. (1981) Sequence and organization of the human mitochondrial genome. Nature, 290, 457-465. (Pubitemid 11159074)
    • (1981) Nature , vol.290 , Issue.5806 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 3
    • 0019837699 scopus 로고
    • Sequence and gene organization of mouse mitochondrial DNA
    • Bibb,M.J., Van Etten,R.A., Wright,C.T., Walberg,M.W. and Clayton,D.A. (1981) Sequence and gene organization of mouse mitochondrial DNA. Cell., 26, 167-180. (Pubitemid 12244496)
    • (1981) Cell , vol.26 , Issue.2 , pp. 167-180
    • Bibb, M.J.1    Van Etten, R.A.2    Wright, C.T.3
  • 4
    • 77449150558 scopus 로고    scopus 로고
    • An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes
    • Jex,A.R., Hall,R.S., Littlewood,D.T. and Gasser,R.B. (2010) An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes. Nucleic Acids Res., 38, 522-533.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 522-533
    • Jex, A.R.1    Hall, R.S.2    Littlewood, D.T.3    Gasser, R.B.4
  • 5
    • 71249123914 scopus 로고    scopus 로고
    • Toward next-generation sequencing of mitochondrial genomes - Focus on parasitic worms of animals and biotechnological implications
    • Jex,A.R., Littlewood,D.T. and Gasser,R.B. (2010) Toward next-generation sequencing of mitochondrial genomes - focus on parasitic worms of animals and biotechnological implications. Biotechnol Adv., 28, 151-159.
    • (2010) Biotechnol Adv. , vol.28 , pp. 151-159
    • Jex, A.R.1    Littlewood, D.T.2    Gasser, R.B.3
  • 6
    • 77958511708 scopus 로고    scopus 로고
    • Index-free de novo assembly and deconvolution of mixed mitochondrial genomes
    • McComish,B.J., Hills,S.F., Biggs,P.J. and Penny,D. (2010) Index-free de novo assembly and deconvolution of mixed mitochondrial genomes. Genome Biol. Evol., 2, 410-424.
    • (2010) Genome Biol. Evol. , vol.2 , pp. 410-424
    • McComish, B.J.1    Hills, S.F.2    Biggs, P.J.3    Penny, D.4
  • 13
    • 33644875533 scopus 로고    scopus 로고
    • MtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
    • Ingman,M. and Gyllensten,U. (2006) mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences. Nucleic Acids Res., 34, D749-751.
    • (2006) Nucleic Acids Res. , vol.34
    • Ingman, M.1    Gyllensten, U.2
  • 14
    • 0037248815 scopus 로고    scopus 로고
    • OGRe: A relational database for comparative analysis of mitochondrial genomes
    • DOI 10.1093/nar/gkg077
    • Jameson,D., Gibson,A.P., Hudelot,C. and Higgs,P.G. (2003) OGRe: a relational database for comparative analysis of mitochondrial genomes. Nucleic Acids Res., 31, 202-206. (Pubitemid 36150365)
    • (2003) Nucleic Acids Research , vol.31 , Issue.1 , pp. 202-206
    • Jameson, D.1    Gibson, A.P.2    Hudelot, C.3    Higgs, P.G.4
  • 15
    • 38549141743 scopus 로고    scopus 로고
    • Mitome: Dynamic and interactive database for comparative mitochondrial genomics in metazoan animals
    • DOI 10.1093/nar/gkm763
    • Lee,Y.S., Oh,J., Kim,Y.U., Kim,N., Yang,S. and Hwang,U.W. (2008) Mitome: dynamic and interactive database for comparative mitochondrial genomics in metazoan animals. Nucleic Acids Res., 36, D938-D942. (Pubitemid 351149848)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Lee, Y.S.1    Oh, J.2    Kim, Y.U.3    Kim, N.4    Yang, S.5    Hwang, U.W.6
  • 17
    • 58149178579 scopus 로고    scopus 로고
    • NCBI Reference Sequences: Current status, policy and new initiatives
    • Pruitt,K.D., Tatusova,T., Klimke,W. and Maglott,D.R. (2009) NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res., 37, D32-D36.
    • (2009) Nucleic Acids Res. , vol.37
    • Pruitt, K.D.1    Tatusova, T.2    Klimke, W.3    Maglott, D.R.4
  • 19
    • 33748029137 scopus 로고    scopus 로고
    • Requirements and standards for organelle genome databases
    • Boore,J. (2006) Requirements and standards for organelle genome databases. OMICS, 10, 119-126.
    • (2006) OMICS , vol.10 , pp. 119-126
    • Boore, J.1
  • 20
    • 77958477598 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the relict frog Leiopelma archeyi: Insights into the root of the frog Tree of Life
    • Irisarri,I., San Mauro,D., Green,D.M. and Zardoya,R. (2010) The complete mitochondrial genome of the relict frog Leiopelma archeyi: insights into the root of the frog Tree of Life. Mitochondrial DNA, 21, 173-182.
    • (2010) Mitochondrial DNA , vol.21 , pp. 173-182
    • Irisarri, I.1    San Mauro, D.2    Green, D.M.3    Zardoya, R.4
  • 21
    • 79955143065 scopus 로고    scopus 로고
    • Reversal to air-driven sound production revealed by a molecular phylogeny of tongueless frogs, family Pipidae
    • Irisarri,I., Vences,M., San Mauro,D., Glaw,F. and Zardoya,R. (2011) Reversal to air-driven sound production revealed by a molecular phylogeny of tongueless frogs, family Pipidae. BMC Evolutionary Biol., 11, 114.
    • (2011) BMC Evolutionary Biol. , vol.11 , pp. 114
    • Irisarri, I.1    Vences, M.2    San Mauro, D.3    Glaw, F.4    Zardoya, R.5
  • 22
    • 77954768343 scopus 로고    scopus 로고
    • Complete mitochondrial genomes of Taenia multiceps, T. hydatigena and T. pisiformis: Additional molecular markers for a tapeworm genus of human and animal health significance
    • Jia,W.Z., Yan,H.B., Guo,A.J., Zhu,X.Q., Wang,Y.C., Shi,W.G., Chen,H.T., Zhan,F., Zhang,S.H., Fu,B.Q. et al. (2011) Complete mitochondrial genomes of Taenia multiceps, T. hydatigena and T. pisiformis: additional molecular markers for a tapeworm genus of human and animal health significance. BMC Genomics, 11, 447.
    • (2011) BMC Genomics , vol.11 , pp. 447
    • Jia, W.Z.1    Yan, H.B.2    Guo, A.J.3    Zhu, X.Q.4    Wang, Y.C.5    Shi, W.G.6    Chen, H.T.7    Zhan, F.8    Zhang, S.H.9    Fu, B.Q.10
  • 23
    • 77954662929 scopus 로고    scopus 로고
    • Sessile snails, dynamic genomes: Gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs
    • Rawlings,T.A., MacInnis,M.J., Bieler,R., Boore,J.L. and Collins,T.M. (2010) Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. BMC Genomics, 11, 440.
    • (2010) BMC Genomics , vol.11 , pp. 440
    • Rawlings, T.A.1    MacInnis, M.J.2    Bieler, R.3    Boore, J.L.4    Collins, T.M.5
  • 24
    • 84858110655 scopus 로고    scopus 로고
    • Evolutionary patterns of the mitochondrial genome in Metazoa: Exploring the role of mutation and selection in mitochondrial protein coding genes
    • Castellana,S., Vicario,S. and Saccone,C. (2011) Evolutionary patterns of the mitochondrial genome in Metazoa: exploring the role of mutation and selection in mitochondrial protein coding genes. Genome Biol. Evol., 3, 1067-1079.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 1067-1079
    • Castellana, S.1    Vicario, S.2    Saccone, C.3
  • 25
    • 79954499043 scopus 로고    scopus 로고
    • Repeated parallel evolution of minimal rRNAs revealed from detailed comparative analysis
    • Klimov,P.B. and Knowles,L.L. (2011) Repeated parallel evolution of minimal rRNAs revealed from detailed comparative analysis. J. Heredity, 102, 283-293.
    • (2011) J. Heredity , vol.102 , pp. 283-293
    • Klimov, P.B.1    Knowles, L.L.2
  • 26
    • 80054117496 scopus 로고    scopus 로고
    • Metaxa: A software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets
    • Bengtsson,J., Eriksson,K.M., Hartmann,M., Wang,Z., Shenoy,B.D., Grelet,G.A., Abarenkov,K., Petri,A., Alm Rosenblad,M. and Nilsson,R.H. (2011) Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets. Antonie Van Leeuwenhoek, 100, 471-475.
    • (2011) Antonie Van Leeuwenhoek , vol.100 , pp. 471-475
    • Bengtsson, J.1    Eriksson, K.M.2    Hartmann, M.3    Wang, Z.4    Shenoy, B.D.5    Grelet, G.A.6    Abarenkov, K.7    Petri, A.8    Alm Rosenblad, M.9    Nilsson, R.H.10
  • 27
    • 65349147638 scopus 로고    scopus 로고
    • Recoding of translation in turtle mitochondrial genomes: Programmed frameshift mutations and evidence of a modified genetic code
    • Russell,R.D. and Beckenbach,A.T. (2008) Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code. J. Mol. Evol., 67, 682-695.
    • (2008) J. Mol. Evol. , vol.67 , pp. 682-695
    • Russell, R.D.1    Beckenbach, A.T.2
  • 28
    • 40549134511 scopus 로고    scopus 로고
    • The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting
    • Rosengarten,R.D., Sperling,E.A., Moreno,M.A., Leys,S.P. and Dellaporta,S.L. (2008) The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: evidence for programmed translational frameshifting. BMC Genomics., 9, 33.
    • (2008) BMC Genomics , vol.9 , pp. 33
    • Rosengarten, R.D.1    Sperling, E.A.2    Moreno, M.A.3    Leys, S.P.4    Dellaporta, S.L.5
  • 31
    • 33748983242 scopus 로고    scopus 로고
    • Mitochondrial DNA transcription and diseases: Past, present and future
    • DOI 10.1016/j.bbabio.2006.03.023, PII S0005272806000946, Mitochondria: from Molecular Insight to Physiology and Pathology
    • Montoya,J., Lopez-Perez,M.J. and Ruiz-Pesini,E. (2006) Mitochondrial DNA transcription and diseases: past, present and future. Biochim Biophys Acta., 1757, 1179-1189. (Pubitemid 44442108)
    • (2006) Biochimica et Biophysica Acta - Bioenergetics , vol.1757 , Issue.9-10 , pp. 1179-1189
    • Montoya, J.1    Lopez-Perez, M.J.2    Ruiz-Pesini, E.3
  • 32
    • 67650652985 scopus 로고    scopus 로고
    • Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods
    • Stewart,J.B. and Beckenbach,A.T. (2009) Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods. Gene., 445, 49-57.
    • (2009) Gene , vol.445 , pp. 49-57
    • Stewart, J.B.1    Beckenbach, A.T.2
  • 34
    • 0031760392 scopus 로고    scopus 로고
    • An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles [2]
    • Mindell,D.P., Sorenson,M.D. and Dimcheff,D.E. (1998) An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Mol. Biol. Evol., 15, 1568-1571. (Pubitemid 28511937)
    • (1998) Molecular Biology and Evolution , vol.15 , Issue.11 , pp. 1568-1571
    • Mindell, D.P.1    Sorenson, M.D.2    Dimcheff, D.E.3
  • 35
    • 77049117359 scopus 로고    scopus 로고
    • A unique genetic code change in the mitochondrial genome of the parasitic nematode Radopholus similis
    • Jacob,J.E., Vanholme,B., Van Leeuwen,T. and Gheysen,G. (2009) A unique genetic code change in the mitochondrial genome of the parasitic nematode Radopholus similis. BMC Res Notes., 2, 192.
    • (2009) BMC Res Notes , vol.2 , pp. 192
    • Jacob, J.E.1    Vanholme, B.2    Van Leeuwen, T.3    Gheysen, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.