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Volumn 45, Issue 12, 2013, Pages 1459-1463

Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation

(56)  Guo, Guangwu a,b   Sun, Xiaojuan a   Chen, Chao b   Wu, Song a,c,d   Huang, Peide b   Li, Zesong a   Dean, Michael e   Huang, Yi a   Jia, Wenlong b   Zhou, Quan b   Tang, Aifa a   Yang, Zuoquan b   Li, Xianxin f   Song, Pengfei b   Zhao, Xiaokun g   Ye, Rui b   Zhang, Shiqiang a   Lin, Zhao b   Qi, Mingfu a   Wan, Shengqing b   more..


Author keywords

[No Author keywords available]

Indexed keywords

ATM PROTEIN; BRCA1 PROTEIN; BRCA2 PROTEIN; CYCLIN DEPENDENT KINASE INHIBITOR 2B; E1A ASSOCIATED P300 PROTEIN; FIBROBLAST GROWTH FACTOR RECEPTOR 3; HISTONE DEMETHYLASE; MYC PROTEIN; TRANSCRIPTION FACTOR E2F1; TRANSCRIPTION FACTOR E2F3;

EID: 84888380730     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.2798     Document Type: Article
Times cited : (391)

References (39)
  • 1
    • 79952232216 scopus 로고    scopus 로고
    • Global cancer statistics
    • Jemal, A. et al. Global cancer statistics. CA Cancer J. Clin. 61, 69-90 (2011).
    • (2011) CA Cancer J. Clin. , vol.61 , pp. 69-90
    • Jemal, A.1
  • 2
    • 25444467767 scopus 로고    scopus 로고
    • Urothelial tumorigenesis: A tale of divergent pathways
    • Wu, X. R. Urothelial tumorigenesis: a tale of divergent pathways. Nat. Rev. Cancer 5, 713-725 (2005).
    • (2005) Nat. Rev. Cancer , vol.5 , pp. 713-725
    • Wu, X.R.1
  • 3
    • 80052266351 scopus 로고    scopus 로고
    • Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
    • Gui, Y. et al. Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat. Genet. 43, 875-878 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 875-878
    • Gui, Y.1
  • 4
    • 0028179153 scopus 로고
    • P53 mutations in human bladder cancer: Genotypic versus phenotypic patterns
    • Cordon-Cardo, C. et al. p53 mutations in human bladder cancer: genotypic versus phenotypic patterns. Int. J. Cancer 56, 347-353 (1994).
    • (1994) Int. J. Cancer , vol.56 , pp. 347-353
    • Cordon-Cardo, C.1
  • 5
    • 23444440484 scopus 로고    scopus 로고
    • FGFR3 and Ras gene mutations are mutually exclusive genetic events in urothelial cell carcinoma
    • DOI 10.1038/sj.onc.1208705
    • Jebar, A. H. et al. FGFR3 and Ras gene mutations are mutually exclusive genetic events in urothelial cell carcinoma. Oncogene 24, 5218-5225 (2005). (Pubitemid 41192438)
    • (2005) Oncogene , vol.24 , Issue.33 , pp. 5218-5225
    • Jebar, A.H.1    Hurst, C.D.2    Tomlinson, D.C.3    Johnston, C.4    Taylor, C.F.5    Knowles, M.A.6
  • 6
    • 0032841519 scopus 로고    scopus 로고
    • Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas
    • Cappellen, D. et al. Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas. Nat. Genet. 23, 18-20 (1999).
    • (1999) Nat. Genet. , vol.23 , pp. 18-20
    • Cappellen, D.1
  • 7
    • 70349667473 scopus 로고    scopus 로고
    • Spectrum of phosphatidylinositol 3-kinase pathway gene alterations in bladder cancer
    • Platt, F. M. et al. Spectrum of phosphatidylinositol 3-kinase pathway gene alterations in bladder cancer. Clin. Cancer Res. 15, 6008-6017 (2009).
    • (2009) Clin. Cancer Res. , vol.15 , pp. 6008-6017
    • Platt, F.M.1
  • 8
    • 0026335819 scopus 로고
    • Loss of heterozygosity at the RB locus is frequent and correlates with muscle invasion in bladder carcinoma
    • Cairns, P., Proctor, A. J. & Knowles, M. A. Loss of heterozygosity at the RB locus is frequent and correlates with muscle invasion in bladder carcinoma. Oncogene 6, 2305-2309 (1991). (Pubitemid 21924078)
    • (1991) Oncogene , vol.6 , Issue.12 , pp. 2305-2309
    • Cairns, P.1    Proctor, A.J.2    Knowles, M.A.3
  • 10
    • 80051874823 scopus 로고    scopus 로고
    • Mutational inactivation of STAG2 causes aneuploidy in human cancer
    • Solomon, D. A. et al. Mutational inactivation of STAG2 causes aneuploidy in human cancer. Science 333, 1039-1043 (2011).
    • (2011) Science , vol.333 , pp. 1039-1043
    • Solomon, D.A.1
  • 11
    • 84864255882 scopus 로고    scopus 로고
    • The origin and evolution of mutations in acute myeloid leukemia
    • Welch, J. S. et al. The origin and evolution of mutations in acute myeloid leukemia. Cell 150, 264-278 (2012).
    • (2012) Cell , vol.150 , pp. 264-278
    • Welch, J.S.1
  • 12
    • 84878372012 scopus 로고    scopus 로고
    • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
    • The Cancer Genome Atlas Research Network
    • The Cancer Genome Atlas Research Network. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N. Engl. J. Med. 368, 2059-2074 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 2059-2074
  • 13
    • 33644841931 scopus 로고    scopus 로고
    • Genetic alterations in urothelial bladder carcinoma: An updated review
    • DOI 10.1002/cncr.21743
    • Mhawech-Fauceglia, P., Cheney, R. T. & Schwaller, J. Genetic alterations in urothelial bladder carcinoma: an updated review. Cancer 106, 1205-1216 (2006). (Pubitemid 43363896)
    • (2006) Cancer , vol.106 , Issue.6 , pp. 1205-1216
    • Mhawech-Fauceglia, P.1    Cheney, R.T.2    Schwaller, J.3
  • 14
    • 38049100456 scopus 로고    scopus 로고
    • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    • Beroukhim, R. et al. Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma. Proc. Natl. Acad. Sci. USA 104, 20007-20012 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 20007-20012
    • Beroukhim, R.1
  • 15
    • 0342434456 scopus 로고    scopus 로고
    • Resistance mechanisms to methotrexate in tumors
    • Bertino, J. R., Goker, E., Gorlick, R., Li, W. W. & Banerjee, D. Resistance mechanisms to methotrexate in tumors. Oncologist 1, 223-226 (1996). (Pubitemid 126669381)
    • (1996) Oncologist , vol.1 , Issue.4 , pp. 223-226
    • Bertino, J.R.1    Goker, E.2    Gorlick, R.3    Li, W.W.4    Banerjee, D.5
  • 17
    • 48449090926 scopus 로고    scopus 로고
    • The TACC proteins: TACC-ling microtubule dynamics and centrosome function
    • Peset, I. & Vernos, I. The TACC proteins: TACC-ling microtubule dynamics and centrosome function. Trends Cell Biol. 18, 379-388 (2008).
    • (2008) Trends Cell Biol. , vol.18 , pp. 379-388
    • Peset, I.1    Vernos, I.2
  • 18
    • 84865805666 scopus 로고    scopus 로고
    • Transforming fusions of FGFR and TACC genes in human glioblastoma
    • Singh, D. et al. Transforming fusions of FGFR and TACC genes in human glioblastoma. Science 337, 1231-1235 (2012).
    • (2012) Science , vol.337 , pp. 1231-1235
    • Singh, D.1
  • 19
    • 84873045850 scopus 로고    scopus 로고
    • Oncogenic FGFR3 gene fusions in bladder cancer
    • Williams, S. V., Hurst, C. D. & Knowles, M. A. Oncogenic FGFR3 gene fusions in bladder cancer. Hum. Mol. Genet. 22, 795-803 (2013).
    • (2013) Hum. Mol. Genet. , vol.22 , pp. 795-803
    • Williams, S.V.1    Hurst, C.D.2    Knowles, M.A.3
  • 20
    • 77951769462 scopus 로고    scopus 로고
    • A sequence variant at 4p16. 3 confers susceptibility to urinary bladder cancer
    • Kiemeney, L. A. et al. A sequence variant at 4p16. 3 confers susceptibility to urinary bladder cancer. Nat. Genet. 42, 415-419 (2010).
    • (2010) Nat. Genet. , vol.42 , pp. 415-419
    • Kiemeney, L.A.1
  • 21
    • 77954683305 scopus 로고    scopus 로고
    • Bladder cancer in 2010: How far have we come CA Cancer J
    • Jacobs, B. L., Lee, C. T. & Montie, J. E. Bladder cancer in 2010: how far have we come CA Cancer J. Clin. 60, 244-272 (2010).
    • (2010) Clin. , vol.60 , pp. 244-272
    • Jacobs, B.L.1    Lee, C.T.2    Montie, J.E.3
  • 22
    • 25844475838 scopus 로고    scopus 로고
    • On the road to cancer: Aneuploidy and the mitotic checkpoint
    • DOI 10.1038/nrc1714
    • Kops, G. J., Weaver, B. A. & Cleveland, D. W. On the road to cancer: aneuploidy and the mitotic checkpoint. Nat. Rev. Cancer 5, 773-785 (2005). (Pubitemid 41400777)
    • (2005) Nature Reviews Cancer , vol.5 , Issue.10 , pp. 773-785
    • Kops, G.J.P.L.1    Weaver, B.A.A.2    Cleveland, D.W.3
  • 24
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: An improved ultrafast tool for short read alignment
    • Li, R. et al. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25, 1966-1967 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1
  • 25
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008). (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 26
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 27
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 28
    • 69949122158 scopus 로고    scopus 로고
    • VarScan: Variant detection in massively parallel sequencing of individual and pooled samples
    • Koboldt, D. C. et al. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25, 2283-2285 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2283-2285
    • Koboldt, D.C.1
  • 29
    • 84655176646 scopus 로고    scopus 로고
    • Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma
    • Guo, G. et al. Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma. Nat. Genet. 44, 17-19 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 17-19
    • Guo, G.1
  • 31
    • 34548679336 scopus 로고    scopus 로고
    • Comment on the consensus coding sequences of human breast and colorectal cancers
    • Getz, G. et al. Comment on "The consensus coding sequences of human breast and colorectal cancers". Science 317, 1500 (2007).
    • (2007) Science , vol.317 , pp. 1500
    • Getz, G.1
  • 32
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequences using transcription factor binding sites
    • Prestridge, D. S. Predicting Pol II promoter sequences using transcription factor binding sites. J. Mol. Biol. 249, 923-932 (1995).
    • (1995) J. Mol. Biol. , vol.249 , pp. 923-932
    • Prestridge, D.S.1
  • 33
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • Li, L. C. & Dahiya, R. MethPrimer: designing primers for methylation PCRs. Bioinformatics 18, 1427-1431 (2002). (Pubitemid 35414532)
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1427-1431
    • Li, L.-C.1    Dahiya, R.2
  • 34
    • 77951850381 scopus 로고    scopus 로고
    • BISMA-fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
    • Rohde, C., Zhang, Y., Reinhardt, R. & Jeltsch, A. BISMA-fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences. BMC Bioinformatics 11, 230 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 230
    • Rohde, C.1    Zhang, Y.2    Reinhardt, R.3    Jeltsch, A.4
  • 35
    • 58149218240 scopus 로고    scopus 로고
    • High-resolution mapping of copy-number alterations with massively parallel sequencing
    • Chiang, D. Y. et al. High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat. Methods 6, 99-103 (2009).
    • (2009) Nat. Methods , vol.6 , pp. 99-103
    • Chiang, D.Y.1
  • 36
    • 77951499638 scopus 로고    scopus 로고
    • Whole genome survey of copy number variation in the spontaneously hypertensive rat: Relationship to quantitative trait loci, gene expression, and blood pressure
    • Charchar, F. J. et al. Whole genome survey of copy number variation in the spontaneously hypertensive rat: relationship to quantitative trait loci, gene expression, and blood pressure. Hypertension 55, 1231-1238 (2010).
    • (2010) Hypertension , vol.55 , pp. 1231-1238
    • Charchar, F.J.1
  • 37
    • 79951580365 scopus 로고    scopus 로고
    • Visualization of fine-scale genomic structure by oligonucleotide-based high-resolution FISH
    • Yamada, N. A. et al. Visualization of fine-scale genomic structure by oligonucleotide-based high-resolution FISH. Cytogenet. Genome Res. 132, 248-254 (2011).
    • (2011) Cytogenet. Genome Res. , vol.132 , pp. 248-254
    • Yamada, N.A.1
  • 38
    • 84873606413 scopus 로고    scopus 로고
    • SOAPfuse: An algorithm for identifying fusion transcripts from paired-end RNA-Seq data
    • Jia, W. et al. SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data. Genome Biol. 14, R12 (2013).
    • (2013) Genome Biol. , vol.14
    • Jia, W.1
  • 39
    • 23144464901 scopus 로고    scopus 로고
    • WebGestalt: An integrated system for exploring gene sets in various biological contexts
    • DOI 10.1093/nar/gki475
    • Zhang, B., Kirov, S. & Snoddy, J. WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res. 33, W741-W748 (2005). (Pubitemid 44530021)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Zhang, B.1    Kirov, S.2    Snoddy, J.3


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