Increased robustness of single-molecule counting with microfluidics, digital isothermal amplification, and a mobile phone versus real-time kinetic measurements

Analytical Chemistry

Volumn 85, Issue 22, 2013, Pages 11129-11136

  Selck, David A ^a   Karymov, Mikhail A ^a   Sun, Bing ^a   Ismagilov, Rustem F ^a  

^a California Institute of Technology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL REACTIONS; CHEMICAL AND BIOLOGICALS; ISOTHERMAL AMPLIFICATIONS; MICROFLUIDIC TECHNOLOGIES; MOLECULAR MEASUREMENTS; NONLINEAR AMPLIFICATION; QUANTITATIVE MEASUREMENT; REAL-TIME KINETIC MEASUREMENTS;

AMPLIFICATION; CELLULAR TELEPHONES; KINETICS; MOBILE PHONES; MOLECULES; POLYMERASE CHAIN REACTION; RNA;

DIGITAL MICROFLUIDICS;

VIRUS RNA;

ARTICLE; GENETICS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; ISOLATION AND PURIFICATION; KINETICS; METHODOLOGY; MICROFLUIDICS; MOBILE PHONE; NUCLEIC ACID AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TEMPERATURE;

CELLULAR PHONE; HIV-1; HUMANS; KINETICS; MICROFLUIDICS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; TEMPERATURE;

EID: 84888321498     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac4030413     Document Type: Article

References (48)

1. Baker, M. S.; Phillips, S. T. J. Am. Chem. Soc. 2011, 133, 5170-5173
2. Gerdts, C. J.; Sharoyan, D. E.; Ismagilov, R. F. J. Am. Chem. Soc. 2004, 126, 6327-6331
3. Jiang, Y.; Li, B.; Milligan, J. N.; Bhadra, S.; Ellington, A. D. J. Am. Chem. Soc. 2013, 135, 7430-7433
4. Kottani, R.; Majjigapu, J. R.; Kurchan, A.; Majjigapu, K.; Gustafson, T. P.; Kutateladze, A. G. J. Am. Chem. Soc. 2006, 128, 14794-14795
5. Mohapatra, H.; Schmid, K. M.; Phillips, S. T. Chem. Commun. 2012, 48, 3018-3020
6. Olea, C.; Horning, D. P.; Joyce, G. F. J. Am. Chem. Soc. 2012, 134, 8050-8053
7. Taton, T. A.; Mirkin, C. A.; Letsinger, R. L. Science 2000, 289, 1757-1760
8. Tian, L.; Weizmann, Y. J. Am. Chem. Soc. 2012, 135, 1661-1664
9. Zuo, X.; Xia, F.; Xiao, Y.; Plaxco, K. W. J. Am. Chem. Soc. 2010, 132, 1816-1818
10. Bánsági, T.; Vanag, V. K.; Epstein, I. R. Science 2011, 331, 1309-1312
11. Epstein, I. R.; Pojman, J. A. An Introduction to Nonlinear Chemical Dynamics: Oscillations, Waves, Patterns, and Chaos; Oxford University Press: New York, 1998.
12. Qian, L.; Winfree, E. Science 2011, 332, 1196-1201
13. Alon, U.; Surette, M. G.; Barkai, N.; Leibler, S. Nature 1999, 397, 168-171
14. Kitano, H. Mol. Syst. Biol. 2007, 3, 137
15. Lucchetta, E. M.; Lee, J. H.; Fu, L. A.; Patel, N. H.; Ismagilov, R. F. Nature 2005, 434, 1134-1138
16. Buhr, E. D.; Yoo, S.-H.; Takahashi, J. S. Science 2010, 330, 379-385
17. Girones, R.; Ferrus, M. A.; Alonso, J. L.; Rodriguez-Manzano, J.; Calgua, B.; Correa, A. D.; Hundesa, A.; Carratala, A.; Bofill-Mas, S. Water Res. 2010, 44, 4325-4339
18. Postollec, F.; Falentin, H.; Pavan, S.; Combrisson, J.; Sohier, D. Food Microbiol. 2011, 28, 848-861
19. The FEM Microbiology Action Team. Method Validation of U.S. Environmental Protection Agency Microbiological Methods of Analysis, 2009; http://www.epa.gov/fem/pdfs/final-microbiology-method-guidance-110409.pdf (accessed June 19, 2013).
20. West, J. S.; Atkins, S. D.; Emberlin, J.; Fitt, B. D. L. Trends Microbiol. 2008, 16, 380-387
21. Heid, C. A.; Stevens, J.; Livak, K. J.; Williams, P. M. Genome Res. 1996, 6, 986-994
22. Belgrader, P.; Benett, W.; Hadley, D.; Richards, J.; Stratton, P.; Mariella, R., Jr.; Milanovich, F. Science (Washington) 1999, 284, 449-450
23. Neuzil, P.; Zhang, C.; Pipper, J.; Oh, S.; Zhuo, L. Nucleic Acids Res. 2006, 34, e77-e77
24. Yager, P.; Edwards, T.; Fu, E.; Helton, K.; Nelson, K.; Tam, M. R.; Weigl, B. H. Nature 2006, 442, 412-418
25. Calmy, A.; Ford, N.; Hirschel, B.; Reynolds, S. J.; Lynen, L.; Goemaere, E.; de la Vega, F. G.; Perrin, L.; Rodriguez, W. Clin. Infect. Dis. 2007, 44, 128-134
26. Roche Diagnostic Systems, Inc. AMPLICOR HIV-1 MONITORTM TEST Standard/UltraSensitive. http://www.fda.gov/downloads/BiologicsBloodVaccines/ BloodBloodProducts/ApprovedProducts/PremarketApprovalsPMAs/UCM093317.pdf (accessed June 19, 2013).
27. Panel on Antiretroviral Guidelines for Adults and Adolescents. Guidelines for the use of antiretroviral agents in HIV-1-infected adults and adolescents; Department of Health and Human Services: Bethesda, MD, 2013; Vol. 2013; http://aidsinfo.nih.gov/ContentFiles/AdultandAdolescentGL.pdf (accessed June 19, 2013).
28. Sykes, P.; Neoh, S.; Brisco, M.; Hughes, E.; Condon, J.; Morley, A. BioTechniques 1992, 13, 444
29. Ottesen, E. A.; Hong, J. W.; Quake, S. R.; Leadbetter, J. R. Science 2006, 314, 1464-1467
30. Rissin, D. M.; Walt, D. R. J. Am. Chem. Soc. 2006, 128, 6286-6287
31. Kreutz, J. E.; Munson, T.; Huynh, T.; Shen, F.; Du, W.; Ismagilov, R. F. Anal. Chem. 2011, 83, 8158-8168
32. Martinez, A. W.; Phillips, S. T.; Carrilho, E.; Thomas, S. W.; Sindi, H.; Whitesides, G. M. Anal. Chem. 2008, 80, 3699-3707
33. Breslauer, D. N.; Maamari, R. N.; Switz, N. A.; Lam, W. A.; Fletcher, D. A. PLoS One 2009, 4 e6320
34. Zhu, H. Y.; Isikman, S. O.; Mudanyali, O.; Greenbaum, A.; Ozcan, A. Lab Chip 2013, 13, 51-67
35. Bustin, S. A.; Benes, V.; Garson, J. A.; Hellemans, J.; Huggett, J.; Kubista, M.; Mueller, R.; Nolan, T.; Pfaffl, M. W.; Shipley, G. L. Clin. Chem. 2009, 55, 611-622
36. Sun, B.; Shen, F.; McCalla, S. E.; Kreutz, J. E.; Karymov, M. A.; Ismagilov, R. F. Anal. Chem. 2013, 85, 1540-1546
37. Francois, P.; Tangomo, M.; Hibbs, J.; Bonetti, E.-J.; Boehme, C. C.; Notomi, T.; Perkins, M. D.; Schrenzel, J. FEMS Immunol. Med. Microbiol. 2011, 62, 41-48
38. Nagamine, K.; Hase, T.; Notomi, T. Mol. Cell. Probes 2002, 16, 223-229
39. Gansen, A.; Herrick, A. M.; Dimov, I. K.; Lee, L. P.; Chiu, D. T. Lab Chip 2012, 12, 2247-2254
40. Zhu, Q. Y.; Gao, Y. B.; Yu, B. W.; Ren, H.; Qiu, L.; Han, S. H.; Jin, W.; Jin, Q. H.; Mu, Y. Lab Chip 2012, 12, 4755-4763
41. Du, W.; Li, L.; Nichols, K. P.; Ismagilov, R. F. Lab Chip 2009, 9, 2286-2292
42. Shen, F.; Du, W.; Kreutz, J. E.; Fok, A.; Ismagilov, R. F. Lab Chip 2010, 10, 2666-2672
43. Shen, F.; Davydova, E. K.; Du, W.; Kreutz, J. E.; Piepenburg, O.; Ismagilov, R. F. Anal. Chem. 2011, 83, 3533-3540
44. Curtis, K. A.; Rudolph, D. L.; Owen, S. M. J. Virol. Methods 2008, 151, 264-270
45. Liu, C. C.; Mauk, M. G.; Hart, R.; Qiu, X. B.; Bau, H. H. Lab Chip 2011, 11, 2686-2692
46. Curtis, K. A.; Rudolph, D. L.; Nejad, I.; Singleton, J.; Beddoe, A.; Weigl, B.; LaBarre, P.; Owen, S. M. PLoS One 2012, 7 e31432
47. Tomita, N.; Mori, Y.; Kanda, H.; Notomi, T. Nat. Protoc. 2008, 3, 877-882
48. Shen, F.; Du, W.; Davydova, E. K.; Karymov, M. A.; Pandey, J.; Ismagilov, R. F. Anal. Chem. 2010, 82, 4606-4612