메뉴 건너뛰기




Volumn , Issue , 2013, Pages 605-612

Read annotation pipeline for high-throughput sequencing data

Author keywords

Lapels; Mapping rate; Merging; Parental origin; Pseudogenomes; Suspenders

Indexed keywords

DIFFERENTIAL EXPRESSIONS; HIGH-THROUGHPUT SEQUENCING; LAPELS; MULTIPLE REFERENCES; PARENTAL ORIGIN; PSEUDOGENOMES; SEQUENCE ANALYSIS; SUSPENDERS;

EID: 84888172731     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2506583.2506645     Document Type: Conference Paper
Times cited : (11)

References (19)
  • 1
    • 84888144004 scopus 로고    scopus 로고
    • Accessed: 2013-05-14
    • Bowtie2 manual. http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml. Accessed: 2013-05-14.
    • Bowtie2 Manual
  • 2
    • 33746068703 scopus 로고    scopus 로고
    • Genetic control of x chromosome inactivation in mice: Definition of the xce candidate interval
    • L. H. Chadwick, L. M. Pertz, K. W. Broman, M. S. Bartolomei, and H. F. Willard. Genetic control of x chromosome inactivation in mice: definition of the xce candidate interval. Genetics, 173(4):2103-2110, 2006.
    • (2006) Genetics , vol.173 , Issue.4 , pp. 2103-2110
    • Chadwick, L.H.1    Pertz, L.M.2    Broman, K.W.3    Bartolomei, M.S.4    Willard, H.F.5
  • 4
    • 70349910898 scopus 로고    scopus 로고
    • Efiect of read-mapping biases on detecting allele-specific expression from rna-sequencing data
    • J. F. Degner, J. C. Marioni, A. A. Pai, J. K. Pickrell, E. Nkadori, Y. Gilad, and J. K. Pritchard. Efiect of read-mapping biases on detecting allele-specific expression from rna-sequencing data. Bioinformatics, 25(24):3207-3212, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.24 , pp. 3207-3212
    • Degner, J.F.1    Marioni, J.C.2    Pai, A.A.3    Pickrell, J.K.4    Nkadori, E.5    Gilad, Y.6    Pritchard, J.K.7
  • 5
    • 77955299096 scopus 로고    scopus 로고
    • High-resolution analysis of parent-of-origin allelic expression in the mouse brain
    • C. Gregg, J. Zhang, B. Weissbourd, S. Luo, G. P. Schroth, D. Haig, and C. Dulac. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. science, 329(5992):643-648, 2010.
    • (2010) Science , vol.329 , Issue.5992 , pp. 643-648
    • Gregg, C.1    Zhang, J.2    Weissbourd, B.3    Luo, S.4    Schroth, G.P.5    Haig, D.6    Dulac, C.7
  • 8
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with bowtie 2
    • B. Langmead and S. L. Salzberg. Fast gapped-read alignment with bowtie 2. Nature methods, 9(4):357-359, 2012.
    • (2012) Nature Methods , vol.9 , Issue.4 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 9
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-eficient alignment of short dna sequences to the human genome
    • B. Langmead, C. Trapnell, M. Pop, S. L. Salzberg, et al. Ultrafast and memory-eficient alignment of short dna sequences to the human genome. Genome Biol, 10(3):R25, 2009.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 15
    • 84870568092 scopus 로고    scopus 로고
    • A new strategy to reduce allelic bias in rna-seq readmapping
    • R. Satya, N. Zavaljevski, and J. Reifman. A new strategy to reduce allelic bias in rna-seq readmapping. Nucleic Acids Research, 40(16):e127-e127, 2012.
    • (2012) Nucleic Acids Research , vol.40 , Issue.16
    • Satya, R.1    Zavaljevski, N.2    Reifman, J.3
  • 17
    • 65449136284 scopus 로고    scopus 로고
    • Tophat: Discovering splice junctions with rna-seq
    • C. Trapnell, L. Pachter, and S. L. Salzberg. Tophat: discovering splice junctions with rna-seq. Bioinformatics, 25(9):1105-1111, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 18
    • 79751531332 scopus 로고    scopus 로고
    • Haplotype and isoform specific expression estimation using multi-mapping rna-seq reads
    • E. Turro, S.-Y. Su, A. Gonficalves, L. Coin, S. Richardson, A. Lewin, et al. Haplotype and isoform specific expression estimation using multi-mapping rna-seq reads. Genome Biol, 12(2):R13, 2011.
    • (2011) Genome Biol , vol.12 , Issue.2
    • Turro, E.1    Su, S.-Y.2    Gonficalves, A.3    Coin, L.4    Richardson, S.5    Lewin, A.6
  • 19
    • 69749122557 scopus 로고    scopus 로고
    • Sensitive and accurate detection of copy number variants using read depth of coverage
    • S. Yoon, Z. Xuan, V. Makarov, K. Ye, and J. Sebat. Sensitive and accurate detection of copy number variants using read depth of coverage. Genome research, 19(9):1586-1592, 2009.
    • (2009) Genome Research , vol.19 , Issue.9 , pp. 1586-1592
    • Yoon, S.1    Xuan, Z.2    Makarov, V.3    Ye, K.4    Sebat, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.