-
1
-
-
80053264411
-
Regulation of alternative sigma factor use
-
Österberg, S.; del Peso-Santos, T.; Shingler, V. Regulation of alternative sigma factor use. Annu. Rev. Microbiol, 2011, 65, 37-55.
-
(2011)
Annu. Rev. Microbiol
, vol.65
, pp. 37-55
-
-
Österberg, S.1
del Peso-Santos, T.2
Shingler, V.3
-
2
-
-
0242692671
-
Multiple sigma subunits and the partitioning of bacterial transcription space
-
Gruber, T. M.; Gross, C. A. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol, 2003, 57, 441-466.
-
(2003)
Annu. Rev. Microbiol
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
3
-
-
0033765113
-
Functional modulation of Escherichia coli RNA polymerase
-
Ishihama, A. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol, 2000, 54, 499-518.
-
(2000)
Annu. Rev. Microbiol
, vol.54
, pp. 499-518
-
-
Ishihama, A.1
-
4
-
-
67149138163
-
Protein sequestration generates a flexible ultrasensitive response in a genetic network
-
Buchler, N. E.; Cross, F. R. Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol. Syst. Biol,. 2009, 5, 272.
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 272
-
-
Buchler, N.E.1
Cross, F.R.2
-
5
-
-
0034712843
-
Robust perfect adaptation in bacterial chemotaxis through integral feedback control
-
Yi, T. M.; Huang, Y.; Simon, M. I.; Doyle, J. Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc. Natl. Acad. Sci. U. S. A, 2000, 97(9), 4649-4653.
-
(2000)
Proc. Natl. Acad. Sci. U.S. A
, vol.97
, Issue.9
, pp. 4649-4653
-
-
Yi, T.M.1
Huang, Y.2
Simon, M.I.3
Doyle, J.4
-
6
-
-
0036500834
-
Reverse engineering of biological complexity
-
Csete, M. E.; Doyle, J. C. Reverse engineering of biological complexity. Science, 2002, 295(5560), 1664-1669.
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
7
-
-
1842558252
-
Robust control in bacterial regulatory circuits
-
Goulian, M. Robust control in bacterial regulatory circuits. Curr. Opin. Microbiol. 2004, 7(2), 198-202.
-
(2004)
Curr. Opin. Microbiol
, vol.7
, Issue.2
, pp. 198-202
-
-
Goulian, M.1
-
8
-
-
84864535645
-
Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach
-
Freyre-González, J. A.; Treviño-Quintanilla, L. G.; Valtierra-Gutiérrez, I. A.; Gutiérrez-Ríos, R. M.; Alonso-Pavón, J. A. Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach. J. Biotechnol, 2012, 161(3), 278-86.
-
(2012)
J. Biotechnol
, vol.161
, Issue.3
, pp. 278-286
-
-
Freyre-González, J.A.1
Treviño-Quintanilla, L.G.2
Valtierra-Gutiérrez, I.A.3
Gutiérrez-Ríos, R.M.4
Alonso-Pavón, J.A.5
-
9
-
-
79955804349
-
The E. coli anti-sigma factor Rsd: Studies on the specificity and regulation of its expression
-
Hofmann, N.; Wurm, R.; Wagner, R. The E. coli anti-sigma factor Rsd: studies on the specificity and regulation of its expression. PLoS One, 2011, 6(5), e19235.
-
(2011)
PLoS One
, vol.6
, Issue.5
-
-
Hofmann, N.1
Wurm, R.2
Wagner, R.3
-
10
-
-
72949106705
-
A global view of Escherichia coli Rsd protein and its interactions
-
Piper, S. E.; Mitchell, J. E.; Lee, D. J.; Busby, S. J. A global view of Escherichia coli Rsd protein and its interactions. Mol. Biosyst, 2009, 5(12), 1943-1947.
-
(2009)
Mol. Biosyst
, vol.5
, Issue.12
, pp. 1943-1947
-
-
Piper, S.E.1
Mitchell, J.E.2
Lee, D.J.3
Busby, S.J.4
-
11
-
-
71749093772
-
Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli
-
Hengge, R. Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli. Res. Microbiol. 2009, 160(9), 667-676.
-
(2009)
Res. Microbiol
, vol.160
, Issue.9
, pp. 667-676
-
-
Hengge, R.1
-
12
-
-
55949120483
-
The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli
-
Hengge, R. The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli. Adv. Exp. Med. Biol, 2008, 631, 40-53.
-
(2008)
Adv. Exp. Med. Biol
, vol.631
, pp. 40-53
-
-
Hengge, R.1
-
13
-
-
0037890192
-
The heat shock response of Escherichia coli
-
Arsène, F.; Tomoyasu, T.; Bukau, B. The heat shock response of Escherichia coli. Int J Food Microbiol. 2000, 55(1-3), 3-9.
-
(2000)
Int J Food Microbiol
, vol.55
, Issue.1-3
, pp. 3-9
-
-
Arsène, F.1
Tomoyasu, T.2
Bukau, B.3
-
14
-
-
34250661333
-
Cellular levels and activity of the flagellar sigma factor FliA of Escherichia coli are controlled by FlgM-modulated proteolysis
-
Barembruch, C.; Hengge, R. Cellular levels and activity of the flagellar sigma factor FliA of Escherichia coli are controlled by FlgM-modulated proteolysis. Mol. Microbiol. 2007, 65(1), 76-89.
-
(2007)
Mol. Microbiol
, vol.65
, Issue.1
, pp. 76-89
-
-
Barembruch, C.1
Hengge, R.2
-
15
-
-
84880692365
-
Regulated Proteolysis: Control of the Escherichia coli (E)-Dependent Cell Envelope Stress Response
-
Barchinger, S. E.; Ades, S. E. Regulated Proteolysis: Control of the Escherichia coli (E)-Dependent Cell Envelope Stress Response. Subcell. Biochem. 2013, 66, 129-160.
-
(2013)
Subcell. Biochem
, vol.66
, pp. 129-160
-
-
Barchinger, S.E.1
Ades, S.E.2
-
16
-
-
84867575393
-
Ligand-induced structural changes in the Escherichia coli ferric citrate transporter reveal modes for regulating proteinprotein interactions
-
Mokdad, A.; Herrick, D. Z.; Kahn, A. K.; Andrews, E.; Kim, M.; Cafiso, D. S. Ligand-induced structural changes in the Escherichia coli ferric citrate transporter reveal modes for regulating proteinprotein interactions. J. Mol. Biol, 2012, 423(5), 818-830.
-
(2012)
J. Mol. Biol
, vol.423
, Issue.5
, pp. 818-830
-
-
Mokdad, A.1
Herrick, D.Z.2
Kahn, A.K.3
Andrews, E.4
Kim, M.5
Cafiso, D.S.6
-
17
-
-
0026612797
-
The sigma 70 family: Sequence conservation and evolutionary relationships
-
Lonetto, M.; Gribskov, M.; Gross, C. A. The sigma 70 family: sequence conservation and evolutionary relationships. J. Bacteriol, 1992; 174(12), 3843-3849.
-
(1992)
J. Bacteriol
, vol.174
, Issue.12
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.A.3
-
18
-
-
0001416657
-
-
In: Escherichia coliand Salmonella: Cellular and Molecular Biology; Neidhardt, F.C., Curtiss, R.; Eds.; ASM Press: Washington D. C
-
Record, M. T.; Reznikoff, W. S.; Craig, M. L.; McQuade, K. L.; Schlax, P. J. Escherichia coli RNA polymerase (E-70), promoters, and kinetics of the steps of transcription initiation. In: Escherichia coliand Salmonella: Cellular and Molecular Biology; Neidhardt, F. C., Curtiss, R.; Eds.; ASM Press: Washington D. C., 1996, pp. 792-821.
-
(1996)
Escherichia coli RNA polymerase (E-70), promoters, and kinetics of the steps of transcription initiation
, pp. 792-821
-
-
Record, M.T.1
Reznikoff, W.S.2
Craig, M.L.3
McQuade, K.L.4
Schlax, P.J.5
-
20
-
-
0035985580
-
The extracytoplasmic function (ECF) sigma factors
-
Helmann, J. D. The extracytoplasmic function (ECF) sigma factors. Adv. Microb. Physiol, 2002, 46, 47-110.
-
(2002)
Adv. Microb. Physiol
, vol.46
, pp. 47-110
-
-
Helmann, J.D.1
-
21
-
-
0141758085
-
Sigma70 promoters in Escherichia coli: Specific transcription in dense regions of overlapping promoter-like signals
-
Huerta, A. M.; Collado-Vides, J. Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. J. Mol. Biol, 2003, 333(2), 261-278.
-
(2003)
J. Mol. Biol
, vol.333
, Issue.2
, pp. 261-278
-
-
Huerta, A.M.1
Collado-Vides, J.2
-
22
-
-
0032980156
-
Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D
-
Jishage, M.; Ishihama, A. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J. Bacteriol, 1999, 181(12), 3768-76.
-
(1999)
J. Bacteriol
, vol.181
, Issue.12
, pp. 3768-3776
-
-
Jishage, M.1
Ishihama, A.2
-
23
-
-
34548720319
-
The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli
-
Klauck, E.; Typas, A.; Hengge, R. The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli. Sci. Prog, 2007, 90(Pt 2-3), 103-127.
-
(2007)
Sci. Prog
, vol.90
, Issue.PART 2-3
, pp. 103-127
-
-
Klauck, E.1
Typas, A.2
Hengge, R.3
-
24
-
-
0029810991
-
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: Intracellular levels of four species of sigma subunit under various growth conditions
-
Jishage, M.; Iwata, A.; Ueda, S.; Ishihama, A. Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J. Bacteriol, 1996, 178(18), 5447-5451.
-
(1996)
J. Bacteriol
, vol.178
, Issue.18
, pp. 5447-5451
-
-
Jishage, M.1
Iwata, A.2
Ueda, S.3
Ishihama, A.4
-
25
-
-
0035688875
-
Bacterial two-hybrid analysis of interactions between region 4 of the sigma (70) subunit of RNA polymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa
-
Dove, S. L.; Hochschild, A. Bacterial two-hybrid analysis of interactions between region 4 of the sigma (70) subunit of RNA polymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa. J. Bacteriol, 2001, 183, 6413-6421.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6413-6421
-
-
Dove, S.L.1
Hochschild, A.2
-
26
-
-
0036714331
-
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
-
Hengge-Aronis, R. Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev, 2002, 66(3), 373-395.
-
(2002)
Microbiol. Mol. Biol. Rev
, vol.66
, Issue.3
, pp. 373-395
-
-
Hengge-Aronis, R.1
-
27
-
-
0031028408
-
Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110
-
Jishage, M.; Ishihama, A. Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110. J. Bacteriol. 1997, 179(3), 959-963.
-
(1997)
J. Bacteriol
, vol.179
, Issue.3
, pp. 959-963
-
-
Jishage, M.1
Ishihama, A.2
-
28
-
-
0034666279
-
Competition among seven Escherichia coli sigma subunits: Relative binding affinities to the core RNA polymerase
-
Maeda, H.; Fujita, N.; Ishihama, A. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase, Nucleic Acids Res, 2000, 28(18), 3497-3503.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.18
, pp. 3497-3503
-
-
Maeda, H.1
Fujita, N.2
Ishihama, A.3
-
29
-
-
27744564073
-
Occurrence and regulation of the ferric citrate transport system in Escherichia coli B, Klebsiella pneumoniae, Enterobacter aerogenes, and Photorhabdus luminescens
-
Mahren, S.; Schnell, H.; Braun, V. Occurrence and regulation of the ferric citrate transport system in Escherichia coli B, Klebsiella pneumoniae, Enterobacter aerogenes, and Photorhabdus luminescens. Arch. Microbiol, 2005, 184(4), 175-186.
-
(2005)
Arch. Microbiol
, vol.184
, Issue.4
, pp. 175-186
-
-
Mahren, S.1
Schnell, H.2
Braun, V.3
-
30
-
-
33745618956
-
Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress
-
Nonaka, G.; Blankschien, M.; Herman, C.; Gross, C. A.; Rhodius, V. A. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Genes Dev, 2006, 20(13), 1776-1789.
-
(2006)
Genes Dev
, vol.20
, Issue.13
, pp. 1776-1789
-
-
Nonaka, G.1
Blankschien, M.2
Herman, C.3
Gross, C.A.4
Rhodius, V.A.5
-
31
-
-
34548153206
-
Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4
-
Patikoglou, G. A.; Westblade, L. F.; Campbell, E. A.; Lamour, V.; Lane, W. J.; Darst, S. A. Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4. J. Mol. Biol, 2007, 372(3), 649-659.
-
(2007)
J. Mol. Biol
, vol.372
, Issue.3
, pp. 649-659
-
-
Patikoglou, G.A.1
Westblade, L.F.2
Campbell, E.A.3
Lamour, V.4
Lane, W.J.5
Darst, S.A.6
-
32
-
-
0035050041
-
Mapping of the Rsd contact site on the sigma 70 subunit of Escherichia coli RNA polymerase
-
Jishage, M.; Dasgupta, D.; Ishihama, A. Mapping of the Rsd contact site on the sigma 70 subunit of Escherichia coli RNA polymerase. J. Bacteriol, 2001, 183(9), 2952-2956.
-
(2001)
J. Bacteriol
, vol.183
, Issue.9
, pp. 2952-2956
-
-
Jishage, M.1
Dasgupta, D.2
Ishihama, A.3
-
33
-
-
42049122814
-
Regulation of bacterial RNA polymerase sigma factor activity: A structural perspective
-
Campbell, E. A.; Westblade, L. F.; Darst, S. A. Regulation of bacterial RNA polymerase sigma factor activity: a structural perspective. Curr. Opin. Microbiol, 2008, 11(2), 121-127.
-
(2008)
Curr. Opin. Microbiol
, vol.11
, Issue.2
, pp. 121-127
-
-
Campbell, E.A.1
Westblade, L.F.2
Darst, S.A.3
-
34
-
-
0035998266
-
Characterization of HscC (Hsc62), homologue of Hsp70 in Escherichia coli: Over-expression of HscC modulates the activity of housekeeping sigma factor sigma70
-
Arifuzzaman, M.; Oshima, T.; Nakade, S.; Mori, H. Characterization of HscC (Hsc62), homologue of Hsp70 in Escherichia coli: over-expression of HscC modulates the activity of housekeeping sigma factor sigma70. Genes Cells, 2002, 7(6), 553-566.
-
(2002)
Genes Cells
, vol.7
, Issue.6
, pp. 553-566
-
-
Arifuzzaman, M.1
Oshima, T.2
Nakade, S.3
Mori, H.4
-
35
-
-
72949106705
-
A global view of Escherichia coli Rsd protein and its interactions
-
Piper, S. E.; Mitchell, J. E.; Lee, D. J.; Busby, S. J. A global view of Escherichia coli Rsd protein and its interactions. Mol. Biosyst, 2009, 5(12), 1943-1947.
-
(2009)
Mol. Biosyst
, vol.5
, Issue.12
, pp. 1943-1947
-
-
Piper, S.E.1
Mitchell, J.E.2
Lee, D.J.3
Busby, S.J.4
-
36
-
-
0032574843
-
A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase
-
Jishage, M.; Ishihama, A. A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase. Proc. Natl. Acad. Sci. U. S. A, 1998, 95(9), 4953-4958.
-
(1998)
Proc. Natl. Acad. Sci. U.S. A
, vol.95
, Issue.9
, pp. 4953-4958
-
-
Jishage, M.1
Ishihama, A.2
-
37
-
-
0032980156
-
Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D
-
Jishage, M.; Ishihama, A. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J. Bacteriol, 1999, 181(12), 3768-3776.
-
(1999)
J. Bacteriol
, vol.181
, Issue.12
, pp. 3768-3776
-
-
Jishage, M.1
Ishihama, A.2
-
38
-
-
34247633645
-
The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70
-
Mitchell, J. E.; Oshima, T.; Piper, S. E.; Webster, C. L.; Westblade, L. F.; Karimova, G.; Ladant, D.; Kolb, A.; Hobman, J. L.; Busby, S. J.; Lee, D. J. The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70. J. Bacteriol, 2007, 189(9), 3489-3495.
-
(2007)
J. Bacteriol
, vol.189
, Issue.9
, pp. 3489-3495
-
-
Mitchell, J.E.1
Oshima, T.2
Piper, S.E.3
Webster, C.L.4
Westblade, L.F.5
Karimova, G.6
Ladant, D.7
Kolb, A.8
Hobman, J.L.9
Busby, S.J.10
Lee, D.J.11
-
39
-
-
0037093379
-
Regulation of sigma factor competition by the alarmone ppGpp
-
Jishage, M.; Kvint, K.; Shingler, V.; Nyström, T. Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev, 2002, 16(10), 1260-1270.
-
(2002)
Genes Dev
, vol.16
, Issue.10
, pp. 1260-1270
-
-
Jishage, M.1
Kvint, K.2
Shingler, V.3
Nyström, T.4
-
40
-
-
0037449780
-
The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase
-
Laurie, A. D.; Bernardo, L. M.; Sze, C. C.; Skarfstad, E.; Szalewska-Palasz, A.; Nystrom, T.; Shingler, V. The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase. J. Biol. Chem, 2003, 278(3), 1494-1503.
-
(2003)
J. Biol. Chem
, vol.278
, Issue.3
, pp. 1494-1503
-
-
Laurie, A.D.1
Bernardo, L.M.2
Sze, C.C.3
Skarfstad, E.4
Szalewska-Palasz, A.5
Nystrom, T.6
Shingler, V.7
-
41
-
-
37749024824
-
ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms
-
Costanzo, A.; Nicoloff, H.; Barchinger, S. E.; Banta, A. B.; Gourse, R. L.; Ades, S. E. ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. Mol. Microbiol, 2008, 67(3), 619-632.
-
(2008)
Mol. Microbiol
, vol.67
, Issue.3
, pp. 619-632
-
-
Costanzo, A.1
Nicoloff, H.2
Barchinger, S.E.3
Banta, A.B.4
Gourse, R.L.5
Ades, S.E.6
-
42
-
-
33645088941
-
Role of the spacer between the-35 and-10 regions in sigmas promoter selectivity in Escherichia coli
-
Typas, A.; Hengge, R. Role of the spacer between the-35 and-10 regions in sigmas promoter selectivity in Escherichia coli. Mol. Microbiol, 2006, 59(3), 1037-1051.
-
(2006)
Mol. Microbiol
, vol.59
, Issue.3
, pp. 1037-1051
-
-
Typas, A.1
Hengge, R.2
-
43
-
-
6044250288
-
Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector
-
Shimada, T.; Makinoshima, H.; Ogawa, Y.; Miki, T.; Maeda, M.; Ishihama, A. Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector. J. Bacteriol, 2004, 186(21), 7112-7122.
-
(2004)
J. Bacteriol
, vol.186
, Issue.21
, pp. 7112-7122
-
-
Shimada, T.1
Makinoshima, H.2
Ogawa, Y.3
Miki, T.4
Maeda, M.5
Ishihama, A.6
-
44
-
-
71749093772
-
Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli
-
Hengge, R. Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli. Res. Microbiol, 2009, 160(9), 667-676.
-
(2009)
Res. Microbiol
, vol.160
, Issue.9
, pp. 667-676
-
-
Hengge, R.1
-
45
-
-
0034815673
-
RpoS-dependent transcriptional control of sprE: Regulatory feedback loop
-
Ruiz, N.; Peterson, C. N.; Silhavy, T. J. RpoS-dependent transcriptional control of sprE: regulatory feedback loop. J. Bacteriol, 2001, 183(20), 5974-5981.
-
(2001)
J. Bacteriol
, vol.183
, Issue.20
, pp. 5974-5981
-
-
Ruiz, N.1
Peterson, C.N.2
Silhavy, T.J.3
-
46
-
-
0032989449
-
Regulation of RpoS proteolysis in Escherichia coli: The response regulator RssB is a recognition factor that interacts with the turnover element in RpoS
-
Becker, G.; Klauck, E.; Hengge-Aronis, R. Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoS. Proc. Natl. Acad. Sci. U. S. A. 1999, 96(11), 6439-6444.
-
(1999)
Proc. Natl. Acad. Sci. U.S. A
, vol.96
, Issue.11
, pp. 6439-6444
-
-
Becker, G.1
Klauck, E.2
Hengge-Aronis, R.3
-
47
-
-
27744589294
-
A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli
-
Mika, F.; Hengge, R. A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli. Genes Dev, 2005, 19(22), 2770-2781.
-
(2005)
Genes Dev
, vol.19
, Issue.22
, pp. 2770-2781
-
-
Mika, F.1
Hengge, R.2
-
48
-
-
0031939765
-
Regulation of RssB-dependent proteolysis in Escherichia coli: A role for acetyl phosphate in a response regulator-controlled process
-
Bouche, S.; Klauck, E.; Fischer, D.; Lucassen, M.; Jung, K.; Hengge-Aronis, R. Regulation of RssB-dependent proteolysis in Escherichia coli: a role for acetyl phosphate in a response regulator-controlled process. Mol. Microbiol, 1998, 27(4), 787-795.
-
(1998)
Mol. Microbiol
, vol.27
, Issue.4
, pp. 787-795
-
-
Bouche, S.1
Klauck, E.2
Fischer, D.3
Lucassen, M.4
Jung, K.5
Hengge-Aronis, R.6
-
49
-
-
0041465001
-
Sequential recognition of two distinct sites in sigma(S) by the proteolytic targeting factor RssB and ClpX
-
Studemann, A.; Noirclerc-Savoye, M.; Klauck, E.; Becker, G.; Schneider, D.; Hengge, R. Sequential recognition of two distinct sites in sigma(S) by the proteolytic targeting factor RssB and ClpX. EMBO J. 2003, 22(16), 4111-4120.
-
(2003)
EMBO J
, vol.22
, Issue.16
, pp. 4111-4120
-
-
Studemann, A.1
Noirclerc-Savoye, M.2
Klauck, E.3
Becker, G.4
Schneider, D.5
Hengge, R.6
-
50
-
-
1842332785
-
Consensus sequence for Escherichia coli heat shock gene promoters
-
Cowing, D. W.; Bardwell, J. C.; Craig, E. A.; Woolford, C.; Hendrix, R. W., Gross C. A. Consensus sequence for Escherichia coli heat shock gene promoters. Proc. Natl. Acad. Sci. U. S. A, 1985, 82(9), 2679-2683.
-
(1985)
Proc. Natl. Acad. Sci. U.S. A
, vol.82
, Issue.9
, pp. 2679-2683
-
-
Cowing, D.W.1
Bardwell, J.C.2
Craig, E.A.3
Woolford, C.4
Hendrix, R.W.5
Gross, C.A.6
-
51
-
-
0031297718
-
Escherichia coli defects caused by DnaK and DnaJ proteins overproduction
-
Lobacz, B.; Wolska, K. I. Escherichia coli defects caused by DnaK and DnaJ proteins overproduction. Acta Microbiol. Pol, 1997, 46(4), 393-397.
-
(1997)
Acta Microbiol. Pol
, vol.46
, Issue.4
, pp. 393-397
-
-
Lobacz, B.1
Wolska, K.I.2
-
52
-
-
0032545230
-
Overexpression of dnaK/dnaJ and groEL confers freeze tolerance to Escherichia coli
-
Chow, K. C.; Tung, W. L. Overexpression of dnaK/dnaJ and groEL confers freeze tolerance to Escherichia coli. Biochem. Biophys. Res. Commun, 1998, 253(2), 502-505.
-
(1998)
Biochem. Biophys. Res. Commun
, vol.253
, Issue.2
, pp. 502-505
-
-
Chow, K.C.1
Tung, W.L.2
-
53
-
-
0023240043
-
The heat shock response of E. coli is regulated by changes in the concentration of sigma 32
-
Straus, D. B.; Walter, W. A.; Gross, C. A. The heat shock response of E. coli is regulated by changes in the concentration of sigma 32. Nature, 1987, 329(6137), 348-351.
-
(1987)
Nature
, vol.329
, Issue.6137
, pp. 348-351
-
-
Straus, D.B.1
Walter, W.A.2
Gross, C.A.3
-
54
-
-
34547918032
-
Region 2. 1 of the Escherichia coli heat-shock sigma factor RpoH (sigma32) is necessary but not sufficient for degradation by the FtsH protease
-
Obrist, M.; Milek, S.; Klauck, E.; Hengge, R.; Narberhaus, F. Region 2. 1 of the Escherichia coli heat-shock sigma factor RpoH (sigma32) is necessary but not sufficient for degradation by the FtsH protease. Microbiology, 2007, 153, 2560-2571.
-
(2007)
Microbiology
, vol.153
, pp. 2560-2571
-
-
Obrist, M.1
Milek, S.2
Klauck, E.3
Hengge, R.4
Narberhaus, F.5
-
55
-
-
20444480246
-
Defense against protein carbonylation by DnaK/DnaJ and proteases of the heat shock regulon
-
Fredriksson, A.; Ballesteros, M.; Dukan, S.; Nystrom, T. Defense against protein carbonylation by DnaK/DnaJ and proteases of the heat shock regulon. J. Bacteriol, 2005, 187(12), 4207-4213.
-
(2005)
J. Bacteriol
, vol.187
, Issue.12
, pp. 4207-4213
-
-
Fredriksson, A.1
Ballesteros, M.2
Dukan, S.3
Nystrom, T.4
-
56
-
-
0033178270
-
Promoter analysis of the class 2 flagellar operons of Salmonella
-
Ikebe, T.; Iyoda, S.; Kutsukake, K. Promoter analysis of the class 2 flagellar operons of Salmonella. Genes Genet. Syst, 1999, 74(4), 179-183.
-
(1999)
Genes Genet. Syst
, vol.74
, Issue.4
, pp. 179-183
-
-
Ikebe, T.1
Iyoda, S.2
Kutsukake, K.3
-
57
-
-
0034444676
-
Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli
-
Chilcott, G. S.; Hughes, K. T. Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol. Mol. Biol. Rev, 2000, 64(4), 694-708.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, Issue.4
, pp. 694-708
-
-
Chilcott, G.S.1
Hughes, K.T.2
-
58
-
-
0030980926
-
The C-terminal half of the anti-sigma factor, FlgM, becomes structured when bound to its target, sigma 28
-
Daughdrill, G. W.; Chadsey, M. S.; Karlinsey, J. E.; Hughes, K. T.; Dahlquist, F. W. The C-terminal half of the anti-sigma factor, FlgM, becomes structured when bound to its target, sigma 28. Nat. Struct. Biol, 1997, 4(4), 285-291.
-
(1997)
Nat. Struct. Biol
, vol.4
, Issue.4
, pp. 285-291
-
-
Daughdrill, G.W.1
Chadsey, M.S.2
Karlinsey, J.E.3
Hughes, K.T.4
Dahlquist, F.W.5
-
59
-
-
33747369854
-
The flagellar-specific transcription factor, sigma28, is the Type III secretion chaperone for the flagellar-specific anti-sigma28 factor FlgM
-
Aldridge, P. D.; Karlinsey, J. E.; Aldridge, C.; Birchall, C.; Thompson, D.; Yagasaki, J.; Hughes, K. T. The flagellar-specific transcription factor, sigma28, is the Type III secretion chaperone for the flagellar-specific anti-sigma28 factor FlgM. Genes Dev, 2006, 20(16), 2315-2326.
-
(2006)
Genes Dev
, vol.20
, Issue.16
, pp. 2315-2326
-
-
Aldridge, P.D.1
Karlinsey, J.E.2
Aldridge, C.3
Birchall, C.4
Thompson, D.5
Yagasaki, J.6
Hughes, K.T.7
-
60
-
-
34250661333
-
Cellular levels and activity of the flagellar sigma factor FliA of Escherichia coli are controlled by FlgM-modulated proteolysis
-
Barembruch, C.; Hengge, R. Cellular levels and activity of the flagellar sigma factor FliA of Escherichia coli are controlled by FlgM-modulated proteolysis. Mol. Microbiol, 2007, 65(1), 76-89.
-
(2007)
Mol. Microbiol
, vol.65
, Issue.1
, pp. 76-89
-
-
Barembruch, C.1
Hengge, R.2
-
61
-
-
0030611694
-
SigmaE is an essential sigma factor in Escherichia coli
-
De Las Peñas, A.; Connolly, L.; Gross, C. A. SigmaE is an essential sigma factor in Escherichia coli. J. Bacteriol, 1997, 179(21), 6862-6864.
-
(1997)
J. Bacteriol
, vol.179
, Issue.21
, pp. 6862-6864
-
-
De Las Peñas, A.1
Connolly, L.2
Gross, C.A.3
-
62
-
-
33846134757
-
Design principles of the proteolytic cascade governing the sigmaEmediated envelope stress response in Escherichia coli: Keys to graded, buffered, and rapid signal transduction
-
Chaba, R.; Grigorova, I. L.; Flynn, J. M.; Baker, T. A.; Gross, C. A. Design principles of the proteolytic cascade governing the sigmaEmediated envelope stress response in Escherichia coli: keys to graded, buffered, and rapid signal transduction. Genes Dev, 2007, 21(1), 124-136.
-
(2007)
Genes Dev
, vol.21
, Issue.1
, pp. 124-136
-
-
Chaba, R.1
Grigorova, I.L.2
Flynn, J.M.3
Baker, T.A.4
Gross, C.A.5
-
63
-
-
0028920231
-
The rpoE gene encoding the sigma E (sigma 24) heat shock sigma factor of Escherichia coli
-
Raina, S.; Missiakas, D.; Georgopoulos, C. The rpoE gene encoding the sigma E (sigma 24) heat shock sigma factor of Escherichia coli. EMBO J, 1995, 14(5), 1043-1055.
-
(1995)
EMBO J
, vol.14
, Issue.5
, pp. 1043-1055
-
-
Raina, S.1
Missiakas, D.2
Georgopoulos, C.3
-
64
-
-
31144454629
-
Conserved and variable functions of the sigmaE stress response in related genomes
-
Rhodius, V. A., Suh; W. C.; Nonaka, G.; West, J.; Gross, C. A. Conserved and variable functions of the sigmaE stress response in related genomes. PLoS Biol, 2006, 4(1), e2.
-
(2006)
PLoS Biol
, vol.4
, Issue.1
-
-
Rhodius, V.A.1
Suh, W.C.2
Nonaka, G.3
West, J.4
Gross, C.A.5
-
65
-
-
0012837562
-
Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA
-
Campbell, E. A.; Tupy, J. L.; Gruber, T. M.; Wang, S.; Sharp, M. M.; Gross, C. A.; Darst, S. A. Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA. Mol. Cell, 2003, 11(4), 1067-1078.
-
(2003)
Mol. Cell
, vol.11
, Issue.4
, pp. 1067-1078
-
-
Campbell, E.A.1
Tupy, J.L.2
Gruber, T.M.3
Wang, S.4
Sharp, M.M.5
Gross, C.A.6
Darst, S.A.7
-
66
-
-
0030604722
-
Crystal structures of a complexed and peptide-free membrane protein-binding domain: Molecular basis of peptide recognition by PDZ
-
Doyle, D. A.; Lee, A.; Lewis, J.; Kim, E.; Sheng, M.; MacKinnon, R. Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Cell, 1996, 85(7), 1067-1076.
-
(1996)
Cell
, vol.85
, Issue.7
, pp. 1067-1076
-
-
Doyle, D.A.1
Lee, A.2
Lewis, J.3
Kim, E.4
Sheng, M.5
McKinnon, R.6
-
67
-
-
35548973933
-
Allosteric activation of DegS, a stress sensor PDZ protease
-
Sohn, J.; Grant, R. A.; Sauer, R. T. Allosteric activation of DegS, a stress sensor PDZ protease. Cell, 2007, 131(3), 572-583.
-
(2007)
Cell
, vol.131
, Issue.3
, pp. 572-583
-
-
Sohn, J.1
Grant, R.A.2
Sauer, R.T.3
-
68
-
-
7544239890
-
Fine-tuning of the Escherichia coli sigmaE envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti sigma factor, RseA
-
Grigorova, I. L.; Chaba, R.; Zhong, H. J.; Alba, B. M.; Rhodius, V.; Herman, C.; Gross, C. A. Fine-tuning of the Escherichia coli sigmaE envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti sigma factor, RseA. Genes Dev, 2004, 18(21), 2686-2697.
-
(2004)
Genes Dev
, vol.18
, Issue.21
, pp. 2686-2697
-
-
Grigorova, I.L.1
Chaba, R.2
Zhong, H.J.3
Alba, B.M.4
Rhodius, V.5
Herman, C.6
Gross, C.A.7
-
69
-
-
50049100893
-
Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors
-
Brooks, B. E.; Buchanan, S. K. Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors. Biochim. Biophys. Acta, 2007, 1778(9), 1930-1945.
-
(2007)
Biochim. Biophys. Acta
, vol.1778
, Issue.9
, pp. 1930-1945
-
-
Brooks, B.E.1
Buchanan, S.K.2
-
70
-
-
4444377383
-
Modulating substrate choice: The SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation
-
Flynn, J. M.; Levchenko, I.; Sauer, R. T.; Baker, T. A. Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation. Genes Dev, 2004, 18(18), 2292-2301.
-
(2004)
Genes Dev
, vol.18
, Issue.18
, pp. 2292-2301
-
-
Flynn, J.M.1
Levchenko, I.2
Sauer, R.T.3
Baker, T.A.4
-
71
-
-
33745463774
-
Growth phase-dependent regulation of the extracytoplasmic stress factor, sigmaE, by guanosine 3', 5'-bispyrophosphate (ppGpp)
-
Costanzo, A.; Ades, S. E. Growth phase-dependent regulation of the extracytoplasmic stress factor, sigmaE, by guanosine 3', 5'-bispyrophosphate (ppGpp). J. Bacteriol, 2006, 188(13), 4627-4634.
-
(2006)
J. Bacteriol
, vol.188
, Issue.13
, pp. 4627-4634
-
-
Costanzo, A.1
Ades, S.E.2
-
72
-
-
0037337264
-
Interactions between the outer membrane ferric citrate transporter FecA and TonB: Studies of the FecA TonB box
-
Ogierman, M.; Braun, V. Interactions between the outer membrane ferric citrate transporter FecA and TonB: studies of the FecA TonB box. J. Bacteriol, 2003, 185(6), 1870-1885.
-
(2003)
J. Bacteriol
, vol.185
, Issue.6
, pp. 1870-1885
-
-
Ogierman, M.1
Braun, V.2
-
73
-
-
0029976326
-
Surface signaling in transcriptional regulation of the ferric citrate transport system of Escherichia coli: Mutational analysis of the alternative sigma factor FecI supports its essential role in fec transport gene transcription
-
Ochs, M.; Angerer, A.; Enz, S.; Braun, V. Surface signaling in transcriptional regulation of the ferric citrate transport system of Escherichia coli: mutational analysis of the alternative sigma factor FecI supports its essential role in fec transport gene transcription. Mol. Gen. Genet, 1996, 250(4), 455-465.
-
(1996)
Mol. Gen. Genet
, vol.250
, Issue.4
, pp. 455-465
-
-
Ochs, M.1
Angerer, A.2
Enz, S.3
Braun, V.4
-
74
-
-
0015815580
-
The inducible citrate-dependent iron transport system in Escherichia coli K12
-
Frost, G. E.; Rosenberg, H. The inducible citrate-dependent iron transport system in Escherichia coli K12. Biochim. Biophys. Acta, 1973, 330(1), 90-101.
-
(1973)
Biochim. Biophys. Acta
, vol.330
, Issue.1
, pp. 90-101
-
-
Frost, G.E.1
Rosenberg, H.2
-
75
-
-
0042508859
-
Structural evidence for ironfree citrate and ferric citrate binding to the TonB-dependent outer membrane transporter FecA
-
Yue, W. W.; Grizot, S.; Buchanan, S. K. Structural evidence for ironfree citrate and ferric citrate binding to the TonB-dependent outer membrane transporter FecA. J. Mol. Biol, 2003, 332(2), 353-368.
-
(2003)
J. Mol. Biol
, vol.332
, Issue.2
, pp. 353-368
-
-
Yue, W.W.1
Grizot, S.2
Buchanan, S.K.3
-
76
-
-
0030925485
-
Surface signaling: Novel transcription initiation mechanism starting from the cell surface
-
Braun, V. Surface signaling: novel transcription initiation mechanism starting from the cell surface. Arch. Microbiol, 1997, 167(6), 325-331.
-
(1997)
Arch. Microbiol
, vol.167
, Issue.6
, pp. 325-331
-
-
Braun, V.1
-
77
-
-
0028904880
-
Signal transfer through three compartments: Transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface
-
Harle, C.; Kim, I.; Angerer, A.; Braun, V. Signal transfer through three compartments: transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface. EMBO J, 1995, 14(7), 1430-1438.
-
(1995)
EMBO J
, vol.14
, Issue.7
, pp. 1430-1438
-
-
Harle, C.1
Kim, I.2
Angerer, A.3
Braun, V.4
-
78
-
-
0242276682
-
Nitrogen assimilation and global regulation in Escherichia coli
-
Reitzer, L. Nitrogen assimilation and global regulation in Escherichia coli. Annu. Rev. Microbiol, 2003, 57, 155-176.
-
(2003)
Annu. Rev. Microbiol
, vol.57
, pp. 155-176
-
-
Reitzer, L.1
-
79
-
-
79953328955
-
Signal sensory systems that impact α-dependent transcription
-
Shingler, V. Signal sensory systems that impact α-dependent transcription. FEMS Microbiol. Rev, 2011, 35(3), 425-440.
-
(2011)
FEMS Microbiol. Rev
, vol.35
, Issue.3
, pp. 425-440
-
-
Shingler, V.1
|