Exploring natural variations in eIF4E and screening for potyviral resistance in diverse Nicotiana species

Horticulture Environment and Biotechnology

Volumn 54, Issue 5, 2013, Pages 430-440

  Jung, Jungsu ^a   Yeam, Inhwa ^a  

^a Andong National University   (South Korea)

Author keywords

host factors; Solanaceae; tabacco; wild species

Indexed keywords

EID: 84888047832     PISSN: 22113452     EISSN: 22113460     Source Type: Journal    
DOI: 10.1007/s13580-013-0045-7     Document Type: Article

References (43)

1. Albar, L., M. Bangratz-Reyser, E. Hebrard, M. N. Ndjiondjop, M. Jones, and A. Ghesquiere. 2006. Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus. Plant J. 47: 417-426.
2. Bombarely, A., K. D. Edwards, J. Sanchez-Tamburrino, and L. A. Mueller. 2012. Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: A phylogenomic perspective. BMC Genomics 13: 406.
3. Carrington, J. C., K. D. Kasschau, S. K. Mahajan, and M. C. Schaad. 1996. Cell-to-cell and long-distance transport of viruses in plants. Plant Cell 8: 1669-1681.
4. Cavatorta, J., K. W. Perez, S. M. Gray, J. van Eck, I. Yeam, and M. Jahn. 2011. Engineering virus resistance using a modified potato gene. Plant Biotechnol J. 9: 1014-1021.
5. Chase, M. W., S. Knapp, A. V. Cox, J. J. Clarkson, Y. Butsko, J. Joseph, V. Savolainen, and A. S. Parokonny. 2003. Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). Ann Bot. 92: 107-127.
6. Clarkson, J. J., L. J. Kelly, A. R. Leitch, S. Knapp, and M. W. Chase. 2010. Nuclear glutamine synthetase evolution in Nicotiana: phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids. Mol. Phylogenet. Evol. 55: 99-112.
7. Clarkson, J. J., S. Knapp, V. F. Garcia, R. G. Olmstead, A. R. Leitch, and M. W. Chase. 2004. Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. Mol. Phylogenet. Evol. 33: 75-90.
8. Clarkson, J. J., K. Y. Lim, A. Kovarik, M. W. Chase, S. Knapp, and A. R. Leitch. 2005. Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae). New Phytol. 168: 241-52.
9. Delon, R., C. R. Fisher, and D. Blancard. 1993. Survey on tobacco viruses. CORESTA Inf Bull. No 4: 72-79.
10. Gao, Z., E. Johansen, S. Eyers, C. L. Thomas, T. H. Noel Ellis, and A. J. Maule. 2004. The potyvirus recessive resistance gene, sbm1, identifies a novel role for translation initiation factor eIF4E in cell-to-cell trafficking. Plant J. 40: 376-385.
11. Gingras, A. C., B. Raught, and N. Sonenberg. 1999. eIF4 initiation factors: Effectors of mRNA recruitment to ribosomes and regulators of translation. Annu. Rev. Biochem. 68: 913-963.
12. Hafren, A., D. Hofius, G. Ronnholm, U. Sonnewald, and K. Makinen. 2010. HSP70 and its cochaperone CPIP promote potyvirus infection in Nicotiana benthamiana by regulating viral coat protein functions. Plant Cell. 22: 523-535.
13. Han, S.-H., D.-W. Lee, E.-H. Kim, M.-K. Lee, Y.-D. Park, S.-H. Kim, and B.-S. Yoon. 2007. Selection of tobacco plants expressing chinese cabbage myrosinase gene and quantification of myrosinase gene expression level using quantitative real-time PCR method. Kor. J. Hort. Sci. Technol. 25: 29-36.
14. Hu, X., T. Meacham, L. Ewing, S. M. Gray, and A. V. Karasev. 2009. A novel recombinant strain of Potato virus Y suggests a new viral genetic determinant of vein necrosis in tobacco. Virus Res. 143: 68-76.
15. Kang, B. C., I. Yeam, J. D. Frantz, J. F. Murphy, and M. M. Jahn. 2005. The pvr1 locus in Capsicum encodes a translation initiation factor eIF4E that interacts with Tobacco etch virus VPg. Plant J. 42: 392-405.
16. Koelle, G. 1961. Genetische analyse einer Y-virus (Rippenbraun) resistenten Mutante der Tabaksorte Virgin A. Zuchter. 31: 71-72.
17. Latorre, B. A., V. Flores, and G. Marholz. 1984. Effect of potato virus Y on growth, yield, and chemical composition of flue-cured tobacco in Chile. Plant Dis. 68: 884-886.
18. Lellis, A. D., K. D. Kasschau, S. A. Whitham, and J. C. Carrington. 2002. Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr. Biol. 12: 1046-1051.
19. Leonard, S., D. Plante, S. Wittmann, N. Daigneault, M. G. Fortin, and J. F. Laliberte. 2000. Complex formation between potyvirus VPg and translation eukaryotic initiation factor 4E correlates with virus infectivity. J. Virol. 74: 7730-7737.
20. Lewis, R. S. 2005. Transfer of resistance to potato virus Y (PVY) from Nicotiana africana to Nicotiana tabacum: Possible influence of tissue culture on the rate of introgression. Theor Appl Genet. 110: 678-687.
21. Lim, K. Y., A. Kovarik, R. Matyasek, M. W. Chase, S. Knapp, E. McCarthy, J. J. Clarkson, and A. R. Leitch. 2006. Comparative genomics and repetitive sequence divergence in the species of diploid Nicotiana section Alatae. Plant J. 48: 907-919.
22. Ling, K. S., K. R. Harris, J. D. Meyer, A. Levi, N. Guner, T. C. Wehner, A. Bendahmane, and M. J. Havey. 2009. Non-synonymous single nucleotide polymorphisms in the watermelon eIF4E gene are closely associated with resistance to zucchini yellow mosaic virus. Theor. Appl. Genet. 120: 191-200.
23. Lucas, G. B. 1975. Diseases of tobacco. 3rd ed. Biological Con-sulting Assoc., Raleigh N. C.
24. Lucas, G. B., G. V. J. Gooding, and J. N. Sasser. 1980. Reaction of Nicotiana africana to black shank, Granville wilt, root knot, tobacco mosaic virus, and potato virus Y. Tob Int. 182: 64-65.
25. Maule, A. J., C. Caranta, and M. I. Boulton. 2007. Sources of natural resistance to plant viruses: Status and prospects. Mol. Plant Pathol. 8: 223-231.
26. Mazier, M., F. Flamain, M. Nicolai, V. Sarnette, and C. Caranta. 2011. Knock-down of both eIF4E1 and eIF4E2 genes confers broad-spectrum resistance against potyviruses in tomato. PLoS One. 6: e29595.
27. Nicaise, V., S. German-Retana, R. Sanjuan, M. P. Dubrana, M. Mazier, B. Maisonneuve, T. Candresse, C. Caranta, and O. LeGall. 2003. The eukaryotic translation initiation factor 4E controls lettuce susceptibility to the Potyvirus Lettuce mosaic virus. Plant Physiol. 132: 1272-1282.
28. Park, M. R., S. H. Park, S. Y. Cho, and K. H. Kim. 2009. Nicotiana benthamiana protein, NbPCIP1, interacting with Potato virus X coat protein plays a role as susceptible factor for viral infection. Virology. 386: 257-269.
29. Piron, F., M. Nicolai, S. Minoia, E. Piednoir, A. Moretti, A. Salgues, D. Zamir, C. Caranta, and A. Bendahmane. 2010. An induced mutation in tomato eIF4E leads to immunity to two potyviruses. PLoS One. 5: e11313.
30. Robaglia, C. and C. Caranta. 2006. Translation initiation factors: A weak link in plant RNA virus infection. Trends Plant Sci. 11: 40-45.
31. Ruffel, S., M. H. Dussault, A. Palloix, B. Moury, A. Bendahmane, C. Robaglia, and C. Caranta. 2002. A natural recessive resistance gene against potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E(eIF4E). Plant J. 32: 1067-1075.
32. Ruffel, S., J. L. Gallois, M. L. Lesage, and C. Caranta. 2005. The recessive potyvirus resistance gene pot-1 is the tomato orthologue of the pepper pvr2-eIF4E gene. Mol. Genet. Genomics 274: 346-353.
33. Ruffel, S., J. L. Gallois, B. Moury, C. Robaglia, A. Palloix, and C. Caranta. 2006. Simultaneous mutations in translation initiation factors eIF4E and eIF(iso)4E are required to prevent pepper veinal mottle virus infection of pepper. J. Gen. Virol. 87: 2089-2098.
34. Sato, M., K. Nakahara, M. Yoshii, M. Ishikawa, and I. Uyeda. 2005. Selective involvement of members of the eukaryotic initiation factor 4E family in the infection of Arabidopsis thaliana by potyviruses. FEBS Lett. 579: 1167-1171.
35. Schwach, F., F. E. Vaistij, L. Jones, and D. C. Baulcombe. 2005. An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol. 138: 1842-1852.
36. Shukla, D. D., C. W. Ward, and A. A. Brunt. 1994. The potyviridae. CAB International, Wallingford, UK.
37. Tribodet, M., L. Glais, C. Kerlan, and E. Jacquot. 2005. Characterization of Potato virus Y (PVY) molecular determinants involved in the vein necrosis symptom induced by PVY N isolates in infected Nicotiana tabacum cv. Xanthi. J Gen Virol. 86: 2101-2105.
38. Vance, V., R. Jordan, J. Edwardson, R. Christie, D. Purcifull, T. Turpen, and B. Falk. 1992. Evidence that pepper mottle virus and potato virus Y are distinct viruses: Analyses of the coat protein and 3′ untranslated sequence of a California isolate of pepper mottle virus. Arch Virol Suppl. 5: 337-345.
39. Wicker, T., W. Zimmermann, D. Perovic, A. H. Paterson, M. Ganal, A. Graner, and N. Stein. 2005. A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats. Plant J. 41: 184-194.
40. Witherspoon, W. D., E. A. Wernsman, G. V. Gooding, and R. C. Rufty. 1991. Characterization of a gametoclonal variant controlling virus resistance in tobacco. Theoretical Appl. Genet. 81: 1-5.
41. Yeam, I., J. R. Cavatorta, D. R. Ripoll, B. C. Kang, and M. M. Jahn. 2007. Functional dissection of naturally occurring amino acid substitutions in eIF4E that confers recessive potyvirus resistance in plants. Plant Cell 19: 2913-2928.
42. Ying, X. B., L. Dong, H. Zhu, C. G. Duan, Q. S. Du, D. Q. Lv, Y. Y. Fang, J. A. Garcia, R. X. Fang, and H. S. Guo. 2010. RNA-dependent RNA polymerase 1 from Nicotiana tabacum suppresses RNA silencing and enhances viral infection in Nicotiana benthamiana. Plant Cell 22: 1358-1372.
43. Zitter, T. A. 1972. Naturally occurring pepper virus strains in South Florida. Plant Dis. Rep. 56: 586-590.