Proteomics and transcriptomics of broccoli subjected to exogenously supplied and transgenic senescence-induced cytokinin for amelioration of postharvest yellowing

Journal of Proteomics

Volumn 93, Issue , 2013, Pages 133-144

  Liu, Mao Sen ^a   Li, Hui Chun ^a   Lai, Ying Mi ^a   Lo, Hsiao Feng ^b   Chen, Long Fang O ^a  

^a INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Broccoli; Cytokinin; Isopentenyltransferase; Proteome; Senescence; Transcriptome

Indexed keywords

CHAPERONE; CYTOKININ;

ACCLIMATIZATION; AMINO ACID METABOLISM; ARTICLE; BROCCOLI; CARBOHYDRATE METABOLISM; ENVIRONMENTAL PROTECTION; LIPID METABOLISM; MICROARRAY ANALYSIS; NONHUMAN; POSTHARVEST PERIOD; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SENESCENCE; SUGAR TRANSPORT; TRANSCRIPTOMICS;

BRASSICA OLERACEA VAR. ITALICA;

BROCCOLI; CYTOKININ; ISOPENTENYLTRANSFERASE; PROTEOME; SENESCENCE; TRANSCRIPTOME;

ALKYL AND ARYL TRANSFERASES; BENZYL COMPOUNDS; BRASSICA; CYTOKININS; FLOWERS; FOOD STORAGE; GENE EXPRESSION REGULATION, PLANT; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEOMICS; PURINES; TRANSCRIPTOME;

EID: 84888032438     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2013.05.014     Document Type: Article

References (50)

1. Gregersen S.L., Culetic A., Boschian L., Krupinsak K. Plant senescence and crop productivity. Plant Mol Biol Jan 25 2013, 10.1007/s11103-013-0013-8.
2. Thomas H. Senescence, ageing and death of the whole plant. New Phytol 2013, 197:696-711.
3. Guiboileau A., Sormani R., Meyer C., Masclaux-Daubresse C. Senescence and death of plant organs: nutrient recycling and developmental regulation. C R Biol 2010, 333:382-391.
4. Page T., Griffiths G., Buchanan-Wollaston V. Molecular and biochemical characterization of postharvest senescence in broccoli. Plant Physiol 2001, 125:718-727.
5. Wilson K.A., McManus M.T., Gordon M.E., Jordan T.W. The proteomics of senescence in leaves of white clover, Trifolium repens (L.). Proteomics 2002, 2:1114-1122.
6. Buchanan-Wollaston V., Page T., Harrison E., Breeze E., Lim P.O., Nam H.G., et al. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J 2005, 42:567-585.
7. Lee I.C., Hong S.W., Whang S.S., Lim P.O., Nam H.G., Koo J.C. Age-dependent action of an ABA-inducible receptor kinase, RPK1, as a positive regulator of senescence in Arabidopsis leaves. Plant Cell Physiol 2011, 52:651-662.
8. Jeong Y.J., Shang Y., Kim B.H., Kim S.Y., Song J.H., Lee J.S., et al. BAK7 displays unequal genetic redundancy with BAK1 in brassinosteroid signaling and early senescence in Arabidopsis. Mol Cells 2010, 29:259-266.
9. Gapper N.E., Coupe S.A., McKenzie M.J., Sinclair B.K., Lill R.E., Jameson P.E. Regulation of harvest-induced senescence in broccoli (Brassica oleracea var. italica) by cytokinin, ethylene, and sucrose. J Plant Growth Regul 2005, 24:153-165.
10. Desclos M., Etienne P., Coquet L., Jouenne T., Bonnefoy J., Segura R., et al. A combined 15N tracing/proteomics study in Brassica napus reveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation. Proteomics 2009, 9:3580-3608.
11. Hebeler R., Oeljeklaus S., Reidegeld K.A., Eisenacher M., Stephan C., Sitek B., et al. Study of early leaf senescence in Arabidopsis thaliana by quantitative proteomics using reciprocal 14N/15N labeling and difference gel electrophoresis. Mol Cell Proteomics 2007, 7:108-120.
12. Shapiro T.A., Fahey J.W., Wade K.L., Stephenson K.K., Talalay P. Chemoprotective glucosinolates and isothiocyanates of broccoli sprouts: metabolism and excretion in humans. Cancer Epidemiol Biomarkers Prev 2001, 10:501-508.
13. Miller C.O., Skoog F., Vonsaltza M.H., Strong F.M. Kinetin, a cell division factor from deoxyribonucleic acid. J Am Chem Soc 1955, 77:1392.
14. Mok D.W.S., Mok M.C. Cytokinin metabolism and action. Annu Rev Plant Physiol Plant Mol Biol 2001, 52:89-118.
15. Rushing J.W. Cytokinins affect respiration, ethylene production, and chlorophyll retention of packaged broccoli florets. Hortscience 1990, 25:88-90.
16. Chen L.F.O., Hwang J.Y., Charng Y.Y., Sun C.W., Yang S.F. Transformation of broccoli (Brassica oleracea var. italica) with isopentenyltransferase gene via Agrobacterium tumefaciens for post-harvest yellowing retardation. Mol Breed 2001, 7:243-257.
17. Chan L.F., Chen L.F.O., Lu H.Y., Lin C.H., Huang H.C., Ting M.Y., et al. Growth, yield and shelf-life of isopentenyltransferase (ipt)-gene transformed broccoli. Can J Plant Sci 2009, 89:701-711.
18. Xu F., Yang Z., Chen X., Jin P., Wang X., Zheng Y. 6-Benzylaminopurine delays senescence and enhances health-promoting compounds of harvested broccoli. J Agric Food Chem 2012, 60:234-240.
19. Salunkhe D.K., Dhaliwal A.S., Boe A.A. N(6)-benzyladenine as a senescence inhibitor for selected horticultural crops. Nature 1962, 195:724-725.
20. 6-benzylaminopurine on respiration and storage behavior of broccoli (Brassica oleracea var. italica). Plant Physiol 1962, 37:509-512.
21. Peleg Z., Reguera M., Tumimbang E., Walia H., Blumwald E. Cytokinin-mediated source/sink modifications improve drought tolerance and increase grain yield in rice under water-stress. Plant Biotechnol J 2011, 9:747-758.
22. Ma Q.H. Genetic engineering of cytokinins and their application to agriculture. Crit Rev Biotechnol 2008, 28:213-232.
23. Miyawaki K., Matsumoto-Kitano M., Kakimoto T. Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate. Plant J 2004, 37:128-138.
24. Schmulling T. Cytokinin. Encyclopedia of Biological Chemistry 2004, W. Lennarz, M.D. Lane (Eds.).
25. Hirose N., Takei K., Kuroha T., Kamada-Nobusada T., Hayashi H., Sakakibara H. Regulation of cytokinin biosynthesis, compartmentalization and translocation. J Exp Bot 2008, 59:75-83.
26. Frebort I., Kowalska M., Hluska T., Frebortova J., Galuszka P. Evolution of cytokinin biosynthesis and degradation. J Exp Bot 2011, 62:2431-2452.
27. Sykorova B., Kuresova G., Daskalova S., Trckova M., Hoyerova K., Raimanova I., et al. Senescence-induced ectopic expression of the A. tumefaciens ipt gene in wheat delays leaf senescence, increases cytokinin content, nitrate influx, and nitrate reductase activity, but does not affect grain yield. J Exp Bot 2008, 59:377-387.
28. Merewitz E.B., Gianfagna T., Huang B.R. Effects of SAG12-ipt and HSP18.2-ipt expression on cytokinin production, root growth, and leaf senescence in creeping bentgrass exposed to drought stress. J Am Soc Hortic Sci 2010, 135:230-239.
29. Huynh L.N., VanToai T., Streeter J., Banowetz G. Regulation of flooding tolerance of SAG12:ipt Arabidopsis plants by cytokinin. J Exp Bot 2005, 56:1397-1407.
30. Liu M.S., Li H.C., Chang Y.M., Wu M.T., Chen L.F.O. Proteomic analysis of stress-related proteins in transgenic broccoli harboring a gene for cytokinin production during postharvest senescence. Plant Sci 2011, 181:288-299.
31. Yarmush M.L., Jayaraman A. Advances in proteomic technologies. Annu Rev Biomed Eng 2002, 4:349-373.
32. Clarke J.D., Zhu T. Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives. Plant J 2006, 45:630-650.
33. Valledor L., Jorrín J. Back to the basics: maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and statistical analyses. J Proteomics 2011, 74:1-18.
34. Hsu F.C., Chou M.Y., Peng H.P., Chou S.J., Shih M.C. Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis. PLoS One 2011, 6:e28888.
35. Thomas H., Huang L., Young M., Ougham H. Evolution of plant senescence. BMC Evol Biol 2009, 9:163.
36. Roper T.R., Klueh J.S. Movement patterns of carbon from source to sink in cranberry. J Am Soc Hortic Sci 1996, 121:846-847.
37. Franca M.B., Panek A.D., Eleutherio E.C. Oxidative stress and its effects during dehydration. Comp Biochem Physiol A Mol Integr Physiol 2007, 146:621-631.
38. Jiang T., Zhang X.F., Wang X.F., Zhang D.P. Arabidopsis 3-ketoacyl-CoA thiolase-2 (KAT2), an enzyme of fatty acid beta-oxidation, is involved in ABA signal transduction. Plant Cell Physiol 2011, 52:528-538.
39. Boston R.S., Viitanen P.V., Vierling E. Molecular chaperones and protein folding in plants. Plant Mol Biol 1996, 32:191-222.
40. Sharkia R., Bonshtien A.L., Mizrahi I., Weiss C., Niv A., Lustig A., et al. On the oligomeric state of chloroplast chaperonin 10 and chaperonin 20. Biochim Biophys Acta 2003, 1651:76-84.
41. Viitanen P.V., Schmidt M., Buchner J., Suzuki T., Vierling E., Dickson R., et al. Functional characterization of the higher plant chloroplast chaperonins. J Biol Chem 1995, 270:18158-18164.
42. Wang W.X., Vinocur B., Shoseyov O., Altman A. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 2004, 9:244-252.
43. Scandalios J.G. Oxygen stress and superoxide dismutases. Plant Physiol 1993, 101:7-12.
44. Tsuchiya T., Ohta H., Okawa K., Iwamatsu A., Shimada H., Masuda T., et al. Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: finding of a lipase motif and the induction by methyl jasmonate. Proc Natl Acad Sci U S A 1999, 96:15362-15367.
45. Leprince O., Harren F.J., Buitink J., Alberda M., Hoekstra F.A. Metabolic dysfunction and unabated respiration precede the loss of membrane integrity during dehydration of germinating radicles. Plant Physiol 2000, 122:597-608.
46. Muller B., Sheen J. Cytokinin signaling pathway. Sci STKE 2007, 2007:cm4.
47. Kuroha T., Tokunaga H., Kojima M., Ueda N., Ishida T., Nagawa S., et al. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell 2009, 21:3152-3169.
48. Houston N.L., Fan C.Z., Xiang Q.Y., Schulze J.M., Jung R., Boston R.S. Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. Plant Physiol 2005, 137:762-778.
49. Rizhsky L., Liang H.J., Shuman J., Shulaev V., Davletova S., Mittler R. When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 2004, 134:1683-1696.
50. Swartzberg D., Hanael R., Granot D. Relationship between hexokinase and cytokinin in the regulation of leaf senescence and seed germination. Plant Biol 2011, 13:439-444.