메뉴 건너뛰기




Volumn , Issue , 2009, Pages 372-407

Through a glass, clearly: Experimental evolution as a window on adaptive genome evolution

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84887904871     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter
Times cited : (3)

References (129)
  • 1
    • 33847737366 scopus 로고    scopus 로고
    • Comparative genomics and the evolution of prokaryotes
    • Abby, S., and V. Daubin. 2007. Comparative genomics and the evolution of prokaryotes. Trends in Microbiology 15:135-141.
    • (2007) Trends in Microbiology , vol.15 , pp. 135-141
    • Abby, S.1    Daubin, V.2
  • 2
    • 2942659270 scopus 로고    scopus 로고
    • Microbial evolution in laboratory environments
    • Adams, J. 2004. Microbial evolution in laboratory environments. Research in Microbiology 155:311-318.
    • (2004) Research in Microbiology , vol.155 , pp. 311-318
    • Adams, J.1
  • 3
    • 84887913887 scopus 로고
    • Abstract 437. In Proceedings XV of the International Congress of Genetics. New Delhi: International Congress of Genetics.
    • Adams, J., and R. Helling 1983. Adaptive changes in bacterial populations. Abstract 437. In Proceedings XV of the International Congress of Genetics. New Delhi: International Congress of Genetics.
    • (1983) Adaptive changes in bacterial populations
    • Adams, J.1    Helling, R.2
  • 4
    • 0021920903 scopus 로고
    • Physiological characterization of adaptive clones in evolving populations of the yeast, Saccharomyces cerevisiae
    • Adams, J., C. Paquin, P. W. Oeller, and L. W. Lee. 1985. Physiological characterization of adaptive clones in evolving populations of the yeast, Saccharomyces cerevisiae. Genetics 110:173-185.
    • (1985) Genetics , vol.110 , pp. 173-185
    • Adams, J.1    Paquin, C.2    Oeller, P.W.3    Lee, L.W.4
  • 7
    • 0027503713 scopus 로고
    • Evolutionary adaptation to temperature. II. Thermal niches of experimental lines of Escherichia coli
    • Bennett, A. F., and R. E. Lenski. 1993. Evolutionary adaptation to temperature. II. Thermal niches of experimental lines of Escherichia coli. Evolution 47:1-12.
    • (1993) Evolution , vol.47 , pp. 1-12
    • Bennett, A.F.1    Lenski, R.E.2
  • 8
    • 0033058808 scopus 로고    scopus 로고
    • Chromosomal changes during experimental evolution in laboratory populations of Escherichia coli
    • Bergthorsson, U., and H. Ochman. 1999. Chromosomal changes during experimental evolution in laboratory populations of Escherichia coli. Journal of Bacteriology 181:1360-1363.
    • (1999) Journal of Bacteriology , vol.181 , pp. 1360-1363
    • Bergthorsson, U.1    Ochman, H.2
  • 10
    • 0028697478 scopus 로고
    • Transposable elements and adaptation of host bacteria
    • Blot, M. 1994. Transposable elements and adaptation of host bacteria. Genetica 93:5-12.
    • (1994) Genetica , vol.93 , pp. 5-12
    • Blot, M.1
  • 11
    • 45849093668 scopus 로고    scopus 로고
    • Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    • Blount, Z. D., C. Z. Borland, and R. E. Lensksi. 2008. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proceedings of the National Academy of Sciences of the USA 105:7899-7905.
    • (2008) Proceedings of the National Academy of Sciences of the USA , vol.105 , pp. 7899-7905
    • Blount, Z.D.1    Borland, C.Z.2    Lensksi, R.E.3
  • 12
    • 5344229442 scopus 로고    scopus 로고
    • The evolution of gene expression in the hippocampus in response to selective breeding for increased locomotor activity
    • Bronikowski, A. M., J. S. Rhodes, T. Garland, T. A. Prolla, T. A. Awad, and S. C. Gammie. 2004. The evolution of gene expression in the hippocampus in response to selective breeding for increased locomotor activity. Evolution 58:2079-2086.
    • (2004) Evolution , vol.58 , pp. 2079-2086
    • Bronikowski, A.M.1    Rhodes, J.S.2    Garland, T.3    Prolla, T.A.4    Awad, T.A.5    Gammie, S.C.6
  • 13
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplication of yeast hexose transport genes in response to selection in a glucose-limited environment
    • Brown, C. J., K. M. Todd, and R. F. Rosenzweig. 1998. Multiple duplication of yeast hexose transport genes in response to selection in a glucose-limited environment. Molecular Biology and Evolution 15:931-942.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 14
    • 0004286963 scopus 로고    scopus 로고
    • Pages 1458-1496 in F. C. Neidhardt et al., eds. Escherichia coli and Salmonella: Cellular and Molecular Biology. Washington, DC: American Society for Microbiology.
    • Cashel M., D. R. Gentry, V. J. Hernandez, and D. Vinella. 1996. The stringent response. Pages 1458-1496 in F. C. Neidhardt et al., eds. Escherichia coli and Salmonella: Cellular and Molecular Biology. Washington, DC: American Society for Microbiology.
    • (1996) The stringent response.
    • Cashel, M.1    Gentry, D.R.2    Hernandez, V.J.3    Vinella, D.4
  • 15
    • 42449134113 scopus 로고    scopus 로고
    • Experimental evolution and evolvability
    • Colegrave, N., and S. Collins. 2008. Experimental evolution and evolvability. Heredity 100: 464-470.
    • (2008) Heredity , vol.100 , pp. 464-470
    • Colegrave, N.1    Collins, S.2
  • 16
    • 0034641929 scopus 로고    scopus 로고
    • The population genetics of ecological specialization in evolving Escherichia coli populations
    • Cooper, V. S., and R. E. Lenski. 2000. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407:736-739.
    • (2000) Nature , vol.407 , pp. 736-739
    • Cooper, V.S.1    Lenski, R.E.2
  • 17
    • 0034977941 scopus 로고    scopus 로고
    • Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment
    • Cooper, V. S., A. F. Bennett, and R. E. Lenski. 2001. Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment. Evolution 55:889-896.
    • (2001) Evolution , vol.55 , pp. 889-896
    • Cooper, V.S.1    Bennett, A.F.2    Lenski, R.E.3
  • 20
    • 40149109210 scopus 로고    scopus 로고
    • Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli
    • Cooper, T. F., and S. K. Remold, R. E. Lenski, and D. Schneider. 2008. Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli. PLoS Genetics 4:e35 (1-10).
    • (2008) PLoS Genetics , vol.4 , Issue.35 E , pp. 1-10
    • Cooper, T.F.1    Remold, S.K.2    Lenski, R.E.3    Schneider, D.4
  • 21
    • 38949119752 scopus 로고    scopus 로고
    • Starvation induces genomic rearrangements and starvationresilient phenotypes in yeast
    • Coyle, S., and E. Kroll. 2008. Starvation induces genomic rearrangements and starvationresilient phenotypes in yeast. Molecular Biology and Evolution 25:301-309.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 301-309
    • Coyle, S.1    Kroll, E.2
  • 22
    • 34548304029 scopus 로고    scopus 로고
    • Chromosome rearrangements and the evolution of genome structuring and adaptability
    • Crombach, A., and P. Hogeweg. 2007. Chromosome rearrangements and the evolution of genome structuring and adaptability. Molecular Biology and Evolution 24:1130-1139.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1130-1139
    • Crombach, A.1    Hogeweg, P.2
  • 23
    • 15544376421 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target for selection
    • Crozat, E., N. Philippe, R. E. Lenski, J. Geiselmann, and D. Schneider. 2005. Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target for selection. Genetics 169:523-532.
    • (2005) Genetics , vol.169 , pp. 523-532
    • Crozat, E.1    Philippe, N.2    Lenski, R.E.3    Geiselmann, J.4    Schneider, D.5
  • 24
    • 10844250172 scopus 로고    scopus 로고
    • Insertionsequence- mediated mutations isolated during adaptations to growth and starvation in Lactococcus lactis
    • de Visser, J. A. G., A. D. L. Akkermans, R. F. Hoekstra, and W. M. de Vos. 2004. Insertionsequence- mediated mutations isolated during adaptations to growth and starvation in Lactococcus lactis. Genetics 168:1145-1157.
    • (2004) Genetics , vol.168 , pp. 1145-1157
    • De Visser, J.A.G.1    Akkermans, A.D.L.2    Hoekstra, R.F.3    De Vos, W.M.4
  • 25
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 26
    • 34249875966 scopus 로고    scopus 로고
    • Incipient speciation by divergent adaptation and antagonistic epistatsis in yeast
    • Dettman, J. R., C. Sirjusingh, L. M. Kohn, and J. B. Anderson. 2007. Incipient speciation by divergent adaptation and antagonistic epistatsis in yeast. Nature 447:585-589.
    • (2007) Nature , vol.447 , pp. 585-589
    • Dettman, J.R.1    Sirjusingh, C.2    Kohn, L.M.3    Anderson, J.B.4
  • 30
    • 0032553467 scopus 로고    scopus 로고
    • Experimental evolution of parasites
    • Ebert, D. 1998. Experimental evolution of parasites. Science 282:1432-1435.
    • (1998) Science , vol.282 , pp. 1432-1435
    • Ebert, D.1
  • 34
    • 0141817853 scopus 로고    scopus 로고
    • What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?
    • Ferenci, T. 2003. What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli? Trends in Microbiology 11:457-461.
    • (2003) Trends in Microbiology , vol.11 , pp. 457-461
    • Ferenci, T.1
  • 35
    • 42449118998 scopus 로고    scopus 로고
    • The spread a beneficial mutation in experimental bacterial populations: The influence of the environment and genotype on the fixation of rpoS mutations
    • Ferenci, T. 2008. The spread a beneficial mutation in experimental bacterial populations: The influence of the environment and genotype on the fixation of rpoS mutations. Heredity 100:446-452.
    • (2008) Heredity , vol.100 , pp. 446-452
    • Ferenci, T.1
  • 36
    • 33744488606 scopus 로고    scopus 로고
    • Evolution of an obligate social cheater to a superior cooperator
    • Fiegna, F., Y. T. N. Yu, S. V. Kadam, and G. J. Velicer. 2006. Evolution of an obligate social cheater to a superior cooperator. Nature 441:310-314.
    • (2006) Nature , vol.441 , pp. 310-314
    • Fiegna, F.1    Yu, Y.T.N.2    Kadam, S.V.3    Velicer, G.J.4
  • 38
    • 20044375201 scopus 로고    scopus 로고
    • Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
    • Fisher, E., and U. Sauer. 2005. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nature Genetics 37:636-640.
    • (2005) Nature Genetics , vol.37 , pp. 636-640
    • Fisher, E.1    Sauer, U.2
  • 39
    • 25844495901 scopus 로고    scopus 로고
    • Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    • Fong, S. S., A. R. Joyce, and B. O. Palsson. 2005. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Research 15:1365-1372.
    • (2005) Genome Research , vol.15 , pp. 1365-1372
    • Fong, S.S.1    Joyce, A.R.2    Palsson, B.O.3
  • 41
    • 0033061057 scopus 로고    scopus 로고
    • Spectra of spontaneous growth-dependent and adaptive mutations at ebgR
    • Hall, B. G. 1999. Spectra of spontaneous growth-dependent and adaptive mutations at ebgR. Journal of Bacteriology 181:1149-1155.
    • (1999) Journal of Bacteriology , vol.181 , pp. 1149-1155
    • Hall, B.G.1
  • 43
    • 0022410121 scopus 로고
    • Limits of adaptation: The evolution of selective neutrality
    • Hartl, D. L., D. E. Dykhuizen, and A. M. Dean. 1985. Limits of adaptation: The evolution of selective neutrality. Genetics 111:655-674.
    • (1985) Genetics , vol.111 , pp. 655-674
    • Hartl, D.L.1    Dykhuizen, D.E.2    Dean, A.M.3
  • 44
    • 0036953237 scopus 로고    scopus 로고
    • DNA topology-mediated control of gene expression in Escherichia coli
    • Hatfield, G. W., and C. J. Benham. 2002. DNA topology-mediated control of gene expression in Escherichia coli. Annual Review Genetics 36:175-203.
    • (2002) Annual Review Genetics , vol.36 , pp. 175-203
    • Hatfield, G.W.1    Benham, C.J.2
  • 45
    • 34147180389 scopus 로고    scopus 로고
    • Analysis of genetic systems using experimental evolution and whole-genome sequencing
    • Hegreness, M., and R. Kishnoy. 2007. Analysis of genetic systems using experimental evolution and whole-genome sequencing. Genome Biology 8:201.
    • (2007) Genome Biology , vol.8 , pp. 201
    • Hegreness, M.1    Kishnoy, R.2
  • 46
    • 0023376305 scopus 로고
    • Evolution of Escherichia coli during growth in a constant environment
    • Helling, R. B., C. Vargas, and J. Adams. 1987. Evolution of Escherichia coli during growth in a constant environment. Genetics 116:349-358.
    • (1987) Genetics , vol.116 , pp. 349-358
    • Helling, R.B.1    Vargas, C.2    Adams, J.3
  • 47
    • 33751544539 scopus 로고    scopus 로고
    • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution of a laboratory timescale
    • Herring, C. D., A. Raghunathan, C. Honisch, T. Patel, M. K. Applebee, A. R. Joyce, et al. 2006. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution of a laboratory timescale. Nature Genetics 38:1406-1412.
    • (2006) Nature Genetics , vol.38 , pp. 1406-1412
    • Herring, C.D.1    Raghunathan, A.2    Honisch, C.3    Patel, T.4    Applebee, M.K.5    Joyce, A.R.6
  • 48
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo-devo and the genetics of adaptation
    • Hoekstra, H. E., and F. A. Coyne. 2007. The locus of evolution: Evo-devo and the genetics of adaptation. Evolution 61:995-1016.
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, F.A.2
  • 49
    • 0033451540 scopus 로고    scopus 로고
    • Desiccation and starvation resistance in Drosophila: Patterns of variation at the species, population and intrapopulation levels
    • Hoffmann, A. A., and L. G. Harshman. 1999. Desiccation and starvation resistance in Drosophila: Patterns of variation at the species, population and intrapopulation levels. Heredity 83:637-643.
    • (1999) Heredity , vol.83 , pp. 637-643
    • Hoffmann, A.A.1    Harshman, L.G.2
  • 50
    • 33846433687 scopus 로고    scopus 로고
    • Experimental evolution of gene duplicates in a bacterial plasmid model
    • Holloway, A. K., T. P. Palzkill, and J. J. Bull. 2007. Experimental evolution of gene duplicates in a bacterial plasmid model. Journal of Molecular Evolution 64:215-222.
    • (2007) Journal of Molecular Evolution , vol.64 , pp. 215-222
    • Holloway, A.K.1    Palzkill, T.P.2    Bull, J.J.3
  • 51
    • 10944220879 scopus 로고    scopus 로고
    • High throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
    • Honisch, C., Raghunathan, C. R. Cantor, B. O. Palsson, and D. van den Bloom. 2004. High throughput mutation detection underlying adaptive evolution of Escherichia coli-K12. Genome Research 14:2495-2502.
    • (2004) Genome Research , vol.14 , pp. 2495-2502
    • Honisch, C.1    Raghunathan Cantor, C.R.2    Palsson, B.O.3    Bloom, D.V.D.4
  • 52
    • 49749215679 scopus 로고
    • Isolation and properties of bacteria capable of high rates of b-galactosidease synthesis
    • Horiuchi, T, J. I. Tomizawa, and A. Novick. 1962. Isolation and properties of bacteria capable of high rates of b-galactosidease synthesis. Biochimica et Biophysica Acta 55:152-163.
    • (1962) Biochimica et Biophysica Acta , vol.55 , pp. 152-163
    • Horiuchi, T.1    Tomizawa, J.I.2    Novick, A.3
  • 53
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • Jaenisch, R., and A. Bird. 2003. Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nature Genetics 33:245-245.
    • (2003) Nature Genetics , vol.33 , pp. 245-245
    • Jaenisch, R.1    Bird, A.2
  • 55
    • 0019869334 scopus 로고
    • The molecular basis of dominance
    • Kacser, H., and J. A. Burns. 1981. The molecular basis of dominance. Genetics 97:1149-1160.
    • (1981) Genetics , vol.97 , pp. 1149-1160
    • Kacser, H.1    Burns, J.A.2
  • 56
    • 33645394597 scopus 로고    scopus 로고
    • Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria
    • Kassen, R., and T. Bataillon. 2006. Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria. Nature Genetics 38:484-488.
    • (2006) Nature Genetics , vol.38 , pp. 484-488
    • Kassen, R.1    Bataillon, T.2
  • 57
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. 1968. Evolutionary rate at the molecular level. Nature 217:624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 59
    • 0006499582 scopus 로고
    • Pages 115-136 in M. Nei and R. K. Koehn, eds. Evolution of Genes and Proteins. Sunderland, MA: Sinauer.
    • Koehn, R. K., A. J. Zera, and J. G. Hall. 1983. Enzyme polymorphism and natural selection. Pages 115-136 in M. Nei and R. K. Koehn, eds. Evolution of Genes and Proteins. Sunderland, MA: Sinauer.
    • (1983) Enzyme polymorphism and natural selection
    • Koehn, R.K.1    Zera, A.J.2    Hall, J.G.3
  • 60
    • 0025919511 scopus 로고
    • Identification of adaptive changes in an evolving population of Escherichia coli: The role of changes with regulatory and highly pleiotropic effects
    • Kurlandzka, A., R. F. Rosenzweig, and J. Adams. 1991. Identification of adaptive changes in an evolving population of Escherichia coli: The role of changes with regulatory and highly pleiotropic effects. Molecular Biology Evolution 8:261-281.
    • (1991) Molecular Biology Evolution , vol.8 , pp. 261-281
    • Kurlandzka, A.1    Rosenzweig, R.F.2    Adams, J.3
  • 62
    • 1842472689 scopus 로고    scopus 로고
    • Phenotypic and genomic evolution during a 20,000-generation experiment with the bacterium Escherichia coli
    • Lenski, R. E. 2004. Phenotypic and genomic evolution during a 20,000-generation experiment with the bacterium Escherichia coli. Plant Breeding Reviews 24:225-265.
    • (2004) Plant Breeding Reviews , vol.24 , pp. 225-265
    • Lenski, R.E.1
  • 63
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski, R. E., M. R. Rose, S. C. Simpson, and S. C. Tadler. 1991. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. American Naturalist 138:1315-1341.
    • (1991) American Naturalist , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 64
    • 0028365256 scopus 로고
    • Dynamics of adaptation and diversification: A 10,000- generation experiment with bacterial populations
    • Lenski, R. E., and M. Travisano. 1994. Dynamics of adaptation and diversification: A 10,000- generation experiment with bacterial populations. Proceedings of the National Academy of Sciences of the USA 91:6808-6814.
    • (1994) Proceedings of the National Academy of Sciences of the USA , vol.91 , pp. 6808-6814
    • Lenski, R.E.1    Travisano, M.2
  • 67
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • Luria, S., and M. Delbruck. 1943. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491-511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.1    Delbruck, M.2
  • 70
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale-metabolic models
    • Mahadevan, R., and C. H. Schilling. 2003. The effects of alternate optimal solutions in constraint-based genome-scale-metabolic models. Metabolic Engineering 5:264-276.
    • (2003) Metabolic Engineering , vol.5 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.H.2
  • 71
    • 33746615552 scopus 로고    scopus 로고
    • Clonal adaptive radiation in a constant environment
    • Maharjan, R., S. Seeto, L. Notley-McRobb, and T. Ferenci. 2006. Clonal adaptive radiation in a constant environment. Science 313:514-517.
    • (2006) Science , vol.313 , pp. 514-517
    • Maharjan, R.1    Seeto, S.2    Notley-McRobb, L.3    Ferenci, T.4
  • 72
    • 0345730808 scopus 로고    scopus 로고
    • Growth phasedependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fisP) in Escherichia coli
    • Mallik, P. T., T. S. Pratt, M. B. Beach, M. D. Bradley, J. Undamatla, et al. 2004 Growth phasedependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fisP) in Escherichia coli. Journal of Bacteriology 186:122-135.
    • (2004) Journal of Bacteriology , vol.186 , pp. 122-135
    • Mallik, P.T.1    Pratt, T.S.2    Beach, M.B.3    Bradley, M.D.4    Undamatla, J.5
  • 73
    • 0242386460 scopus 로고    scopus 로고
    • Identifying global regulators in transcriptional regulatory networks in bacteria
    • Martinez-Antonio, A., and J. Collado-Vides. 2003 Identifying global regulators in transcriptional regulatory networks in bacteria. Current Opinion in Microbiology 6:482-489.
    • (2003) Current Opinion in Microbiology , vol.6 , pp. 482-489
    • Martinez-Antonio, A.1    Collado-Vides, J.2
  • 74
    • 33846202481 scopus 로고    scopus 로고
    • Mutations leading to the loss of sporulation ability in Bacillus subtilis are sufficiently frequent to favor genetic canalization
    • Masel, J., and H. Maughan. 2007. Mutations leading to the loss of sporulation ability in Bacillus subtilis are sufficiently frequent to favor genetic canalization. Genetics 175:453-457.
    • (2007) Genetics , vol.175 , pp. 453-457
    • Masel, J.1    Maughan, H.2
  • 75
    • 33846215623 scopus 로고    scopus 로고
    • The loss of adaptive plasticity during long periods of environmental stasis
    • Masel, J., O. D. King, and H. Maughan. 2007. The loss of adaptive plasticity during long periods of environmental stasis. American Naturalist 169:38-46.
    • (2007) American Naturalist , vol.169 , pp. 38-46
    • Masel, J.1    King, O.D.2    Maughan, H.3
  • 76
    • 33745277137 scopus 로고    scopus 로고
    • The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis
    • Maughan, H., V. Callicotte, A. Hancock, C. W. Birky Jr., W. L. Nicholson, and J. Masel. 2006. The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis. Evolution 60:686-695.
    • (2006) Evolution , vol.60 , pp. 686-695
    • Maughan, H.1    Callicotte, V.2    Hancock, A.3    Birky Jr., C.W.4    Nicholson, W.L.5    Masel, J.6
  • 77
    • 35549010554 scopus 로고    scopus 로고
    • The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis
    • Maughan, H., J. Masel, C. W. Birky, and E. L. Nicholson. 2007. The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis. Genetics 177:937-948.
    • (2007) Genetics , vol.177 , pp. 937-948
    • Maughan, H.1    Masel, J.2    Birky, C.W.3    Nicholson, E.L.4
  • 80
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller, H. J. 1932. Some genetic aspects of sex. American Naturalist 66:118-138.
    • (1932) American Naturalist , vol.66 , pp. 118-138
    • Muller, H.J.1
  • 81
    • 0028354540 scopus 로고
    • Insertion sequence related genetic variation in resting Escherichia coli K-12
    • Naas, T., M. Blot, W. M. Fitch, and W. Arber. 1994. Insertion sequence related genetic variation in resting Escherichia coli K-12. Genetics 136:721-730.
    • (1994) Genetics , vol.136 , pp. 721-730
    • Naas, T.1    Blot, M.2    Fitch, W.M.3    Arber, W.4
  • 82
    • 0028911404 scopus 로고
    • Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12
    • Naas, T., M. Blot, W. M. Fitch, and W. Arber. 1995. Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12. Molecular Biology Evolution 12:198-207.
    • (1995) Molecular Biology Evolution , vol.12 , pp. 198-207
    • Naas, T.1    Blot, M.2    Fitch, W.M.3    Arber, W.4
  • 83
    • 0000394193 scopus 로고
    • Origin of bacterial variants
    • Newcombe, H. B. 1949. Origin of bacterial variants. Nature 164:150-151.
    • (1949) Nature , vol.164 , pp. 150-151
    • Newcombe, H.B.1
  • 84
    • 10844266565 scopus 로고    scopus 로고
    • Experimental adaptation of Salmonella typhimurium to mice
    • Nilsson, A. I., E. Kugelberg, O. G. Berg, and D. I. Andersson. 2004. Experimental adaptation of Salmonella typhimurium to mice. Genetics 168:1119-1130.
    • (2004) Genetics , vol.168 , pp. 1119-1130
    • Nilsson, A.I.1    Kugelberg, E.2    Berg, O.G.3    Andersson, D.I.4
  • 86
    • 0036181664 scopus 로고    scopus 로고
    • rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
    • Notley-McRobb, L. T. King, and T. Ferenci. 2002. rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. Journal of Bacteriology 187:806-811.
    • (2002) Journal of Bacteriology , vol.187 , pp. 806-811
    • McRobb, N.1    King, L.T.2    Ferenci, T.3
  • 87
    • 0037461340 scopus 로고    scopus 로고
    • The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations
    • Notley-McRobb, L. T. King, and T. Ferenci. 2003. The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations. Proceedings of the Royal Society of London B, Biological Sciences 270:843-848.
    • (2003) Proceedings of the Royal Society of London B, Biological Sciences , vol.270 , pp. 843-848
    • McRobb, N.1    King, L.T.2    Ferenci, T.3
  • 89
    • 11844252121 scopus 로고    scopus 로고
    • Exploring microbial microevolution with microarrays. Infection
    • Ochman, H., and S. R. Santos. 2005. Exploring microbial microevolution with microarrays. Infection. Genetics and Evolution 5:103-108.
    • (2005) Genetics and Evolution , vol.5 , pp. 103-108
    • Ochman, H.1    Santos, S.R.2
  • 90
    • 28644432471 scopus 로고    scopus 로고
    • Pleiotropic effects of beneficial mutations in Escherichia coli
    • Ostrowski, E. A., D. E. Rozen, and R. E. Lenski. 2005. Pleiotropic effects of beneficial mutations in Escherichia coli. Evolution 59:2343-2352.
    • (2005) Evolution , vol.59 , pp. 2343-2352
    • Ostrowski, E.A.1    Rozen, D.E.2    Lenski, R.E.3
  • 93
    • 0020640576 scopus 로고
    • Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
    • Paquin C., and J. Adams. 1983. Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature 30:495-500.
    • (1983) Nature , vol.30 , pp. 495-500
    • Paquin, C.1    Adams, J.2
  • 94
    • 33747849237 scopus 로고    scopus 로고
    • Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
    • Pelosi, L., L. Kuhn, D. Guetta, J. Garin, J. Geiselmann, R. E. Lenski, and D. Schneider. 2006. Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli. Genetics 173:1851-1869.
    • (2006) Genetics , vol.173 , pp. 1851-1869
    • Pelosi, L.1    Kuhn, L.2    Guetta, D.3    Garin, J.4    Geiselmann, J.5    Lenski, R.E.6    Schneider, D.7
  • 95
    • 34548769341 scopus 로고    scopus 로고
    • Evolution of global regulatory networks during a long-term experiment with Escherichia coli
    • Philippe, N., E. Crozat, R. E. Lenski, and D. Schneider. 2007. Evolution of global regulatory networks during a long-term experiment with Escherichia coli. BioEssays 29:846-860.
    • (2007) BioEssays , vol.29 , pp. 846-860
    • Philippe, N.1    Crozat, E.2    Lenski, R.E.3    Schneider, D.4
  • 96
    • 0002305548 scopus 로고    scopus 로고
    • Pages 483-517 in A. L. Sonenshien, J. A. Hoch, and R. Losick, eds. Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Washington, DC: American Society for Microbiology.
    • Piggot, P. J., and R. Losick. 2002. Sporulation genes and intercompartmental regulation. Pages 483-517 in A. L. Sonenshien, J. A. Hoch, and R. Losick, eds. Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Washington, DC: American Society for Microbiology.
    • (2002) Sporulation genes and intercompartmental regulation
    • Piggot, P.J.1    Losick, R.2
  • 97
    • 20044375763 scopus 로고    scopus 로고
    • Array comparative genomic hybridization and its application to cancer
    • Pinkel, D., and D. G. Albertson. 2005. Array comparative genomic hybridization and its application to cancer. Nature Genetics 37:S11-S17.
    • (2005) Nature Genetics , vol.37
    • Pinkel, D.1    Albertson, D.G.2
  • 99
    • 33750452661 scopus 로고    scopus 로고
    • Widespread adaptive evolution of Drosophila genes with sex-biased expression
    • Proschel, M., Z. Zhang, and J. Parsch. 2006. Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 174:893-900.
    • (2006) Genetics , vol.174 , pp. 893-900
    • Proschel, M.1    Zhang, Z.2    Parsch, J.3
  • 101
    • 22844445679 scopus 로고    scopus 로고
    • Differential patterns of gene expression and gene complement in laboratoryevolved lines of E. coli
    • Riehle, M. M., A. F. Bennett, and A. D. Long. 2005. Differential patterns of gene expression and gene complement in laboratoryevolved lines of E. coli. Integrative Comparative Biology 45:532-538.
    • (2005) Integrative Comparative Biology , vol.45 , pp. 532-538
    • Riehle, M.M.1    Bennett, A.F.2    Long, A.D.3
  • 102
    • 0016144587 scopus 로고
    • Gene duplication in experimental enzyme evolution
    • Rigby, P. W. J., B. D. Burleigh, and B. S. Hartley. 1974. Gene duplication in experimental enzyme evolution. Nature 251:200-204.
    • (1974) Nature , vol.251 , pp. 200-204
    • Rigby, P.W.J.1    Burleigh, B.D.2    Hartley, B.S.3
  • 104
    • 0028094645 scopus 로고
    • Microbial evolution in a simple unstructured environment: Genetic differentiation in Escherichia coli
    • Rosenzweig, R. F., R. R. Sharp, D. Treves, and J. Adams. 1994. Microbial evolution in a simple unstructured environment: Genetic differentiation in Escherichia coli. Genetics 137:903-17.
    • (1994) Genetics , vol.137 , pp. 903-917
    • Rosenzweig, R.F.1    Sharp, R.R.2    Treves, D.3    Adams, J.4
  • 105
    • 0037172667 scopus 로고    scopus 로고
    • Fitness effects of fixed beneficial mutations in microbial populations
    • Rozen, D. E., L. deVisser, and P. J. Garrish. 2002. Fitness effects of fixed beneficial mutations in microbial populations. Current Biology 12:1040-1045.
    • (2002) Current Biology , vol.12 , pp. 1040-1045
    • Rozen, D.E.1    DeVisser, L.2    Garrish, P.J.3
  • 106
    • 0034104460 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism
    • Rozen, D. E., and R. E. Lenski. 2000. Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism. American Naturalist 155:24-35.
    • (2000) American Naturalist , vol.155 , pp. 24-35
    • Rozen, D.E.1    Lenski, R.E.2
  • 107
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with complementary DNA microarray
    • Schena, M., D. Shalon, R. W. Davis, and P. O. Brown. 1995. Quantitative monitoring of gene expression patterns with complementary DNA microarray. Science 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 108
    • 0033786720 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli IX. Characterization of insertion sequence-mediated mutations and rearrangements
    • Schneider, D., E. Duperchy, E. Courange, R.E. Lenski, and M. Blot. 2000. Long-term experimental evolution in Escherichia coli IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics 156:477-488.
    • (2000) Genetics , vol.156 , pp. 477-488
    • Schneider, D.1    Duperchy, E.2    Courange, E.3    Lenski, R.E.4    Blot, M.5
  • 109
    • 2942632968 scopus 로고    scopus 로고
    • Dynamics of insertion sequence elements during experimental evolution of bacteria
    • Schneider, D., and R. E. Lenski. 2004. Dynamics of insertion sequence elements during experimental evolution of bacteria. Research in Microbiology 155:211-215.
    • (2004) Research in Microbiology , vol.155 , pp. 211-215
    • Schneider, D.1    Lenski, R.E.2
  • 110
    • 33747370046 scopus 로고    scopus 로고
    • High-resolution mutation mapping reveals parallel experimental evolution in yeast
    • Segre, A. V., A. W. Murray, and J.-Y. Leu. 2006. High-resolution mutation mapping reveals parallel experimental evolution in yeast. PLoS Biology 4:1372-1385.
    • (2006) PLoS Biology , vol.4 , pp. 1372-1385
    • Segre, A.V.1    Murray, A.W.2    Leu, J.Y.3
  • 113
    • 34248143619 scopus 로고    scopus 로고
    • Gene expression profile analysis of Drosophila melanogaster selected for resistance to environmental stressors
    • Sorensen, J. G., M. M. Nielsen, and V. Loeschke. 2007. Gene expression profile analysis of Drosophila melanogaster selected for resistance to environmental stressors. Journal of Evolutionary Biology 20:1624-1636.
    • (2007) Journal of Evolutionary Biology , vol.20 , pp. 1624-1636
    • Sorensen, J.G.1    Nielsen, M.M.2    Loeschke, V.3
  • 114
    • 33846469818 scopus 로고    scopus 로고
    • Adaptive diversification in genes that regulate resource use in Escherichia coli
    • Spencer, C. C., M. Bertrand, M. Travisano, and M. Doebeli. 2007. Adaptive diversification in genes that regulate resource use in Escherichia coli. PLoS Genetics 3:83-88.
    • (2007) PLoS Genetics , vol.3 , pp. 83-88
    • Spencer, C.C.1    Bertrand, M.2    Travisano, M.3    Doebeli, M.4
  • 117
    • 0031876504 scopus 로고    scopus 로고
    • Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli
    • Treves, D. S., S. Manning, and J. Adams. 1998. Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Molecular Biology Evolution 15:789-797.
    • (1998) Molecular Biology Evolution , vol.15 , pp. 789-797
    • Treves, D.S.1    Manning, S.2    Adams, J.3
  • 119
    • 33947608392 scopus 로고    scopus 로고
    • Stationary phase reorganization of the Escherichia coli transcription machinery by Crl protein, a fine tuner of sigmas activity and levels
    • Typas, A., C. Barembruch, A. Prossling, and R. Hengge. 2007. Stationary phase reorganization of the Escherichia coli transcription machinery by Crl protein, a fine tuner of sigmas activity and levels. Embo Journal 26:1569-1578.
    • (2007) Embo Journal , vol.26 , pp. 1569-1578
    • Typas, A.1    Barembruch, C.2    Prossling, A.3    Hengge, R.4
  • 120
    • 33750811169 scopus 로고    scopus 로고
    • Leaner and meaner genomes in Escherichia coli
    • Ussery, D. W. 2006. Leaner and meaner genomes in Escherichia coli. Genome Biology 7:237.
    • (2006) Genome Biology , vol.7 , pp. 237
    • Ussery, D.W.1
  • 122
    • 0034611798 scopus 로고    scopus 로고
    • Developmental cheating in the social bacterium Myxococcus xanthus
    • Velicer, G. J., L. Kroos, and R. E. Lenski. 2000. Developmental cheating in the social bacterium Myxococcus xanthus. Nature 404:598-601.
    • (2000) Nature , vol.404 , pp. 598-601
    • Velicer, G.J.1    Kroos, L.2    Lenski, R.E.3
  • 123
    • 0036233839 scopus 로고    scopus 로고
    • Rescue of social motility lost during evolution of Myxococcus xanthus in an asocial regime
    • Velicer, G. J., R. E. Lenski, and L. Kroos. 2002. Rescue of social motility lost during evolution of Myxococcus xanthus in an asocial regime. Journal of Bacteriology 184:2719-2727.
    • (2002) Journal of Bacteriology , vol.184 , pp. 2719-2727
    • Velicer, G.J.1    Lenski, R.E.2    Kroos, L.3
  • 125
    • 0033575348 scopus 로고    scopus 로고
    • Different trajectories of parallel evolution during viral adaptation
    • Wichman, H. A., M. R. Badgett, L. A. Scott, C. M. Boulianne, and J. J. Bull. 1999. Different trajectories of parallel evolution during viral adaptation. Science 258:422-424.
    • (1999) Science , vol.258 , pp. 422-424
    • Wichman, H.A.1    Badgett, M.R.2    Scott, L.A.3    Boulianne, C.M.4    Bull, J.J.5
  • 126
    • 20444382446 scopus 로고    scopus 로고
    • Adaptive molecular evolution for 13,000 phage generations: A possible arms race
    • Wichman, H. A., J. Millstein, and J. J. Bull. 2005. Adaptive molecular evolution for 13,000 phage generations: A possible arms race. Genetics 170:19-31.
    • (2005) Genetics , vol.170 , pp. 19-31
    • Wichman, H.A.1    Millstein, J.2    Bull, J.J.3
  • 129
    • 0041817649 scopus 로고    scopus 로고
    • Bacterial evolution through the selective loss of beneficial genes: Trade-offs in expression involving two loci
    • Zinser, E. R., D. Schneider, M. Blot, and R. Kolter. 2003. Bacterial evolution through the selective loss of beneficial genes: Trade-offs in expression involving two loci. Genetics 164:1271-1277.
    • (2003) Genetics , vol.164 , pp. 1271-1277
    • Zinser, E.R.1    Schneider, D.2    Blot, M.3    Kolter, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.