Infectious salmon anaemia virus (ISAV) in Chilean Atlantic salmon (Salmo salar) aquaculture: Emergence of low pathogenic ISAV-HPR0 and re-emergence of virulent ISAV-HPR: HPR3 and HPR14

Virology Journal

Volumn 10, Issue , 2013, Pages

  Godoy, Marcos G ^a,b,c   Kibenge, Molly Jt ^d   Suarez, Rudy ^a,c   Lazo, Eduardo ^c   Heisinger, Alejandro ^h   Aguinaga, Javier ^c   Bravo, Diego ^c   Mendoza, Julio ^g   Llegues, Katerina O ^a,c   Avendaño Herrera, Rubén ^e,f   Vera, Cristian ^c   Mardones, Fernando ⁱ   Kibenge, Frederick Sb ^d  

^a Centro de Investigaciones Biológicas Aplicadas CIBA   (Chile)

^b UNIVERSIDAD SAN SEBASTIÁN   (Chile)

^c ETECMA   (Chile)

^d UNIVERSITY OF PRINCE EDWARD ISLAND   (Canada)

^e UNIVERSIDAD ANDRÉS BELLO   (Chile)

^f Interdisciplinary Center for Aquaculture Research   (Chile)

^g Mainstream Chile SA   (Chile)

^h Multiexport Foods   (Chile)

ⁱ School of Veterinary Medicine   (United States)

Author keywords

ISAV HPR; ISAV HPR0; Low pathogenic infectious salmon anaemia virus; Salmo salar; Virulence; Virulent ISAV

Indexed keywords

HEMAGGLUTININ; HEMAGGLUTININ ESTERASE; UNCLASSIFIED DRUG;

AQUACULTURE; ARTICLE; ATLANTIC SALMON; CALIGUS ROGERCRESSEYI; CHILE; CONTROLLED STUDY; ECTOPARASITE; GENE SEQUENCE; HIGHLY POLYMORPHIC REGION; INFECTIOUS SALMON ANEMIA; INFECTIOUS SALMON ANEMIA VIRUS; MIXED INFECTION; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGENY; PISCIRICKETTSIA SALMONIS; PROTEIN POLYMORPHISM; RISK FACTOR; VIRUS;

BACTERIA (MICROORGANISMS); CALIGUS ROGERCRESSEYI; INFECTIOUS SALMON ANEMIA VIRUS; ISAVIRUS; ORTHOMYXOVIRIDAE; PISCIRICKETTSIA SALMONIS; SALMO SALAR;

ANIMALS; AQUACULTURE; CHILE; CLUSTER ANALYSIS; FISH DISEASES; GENOTYPE; ISAVIRUS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE INFECTIONS; PHYLOGENY; RNA, VIRAL; SALMO SALAR; SEQUENCE ANALYSIS, DNA;

EID: 84887866370     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-344     Document Type: Article

References (51)

1. OIE, Manual of Diagnostic Tests for Aquatic Animals 2012 2012 http://www.oie.int/en/international-standard-setting/aquatic-manual/ access-online/
2. Countermeasures against viral diseases of farmed fish. Kibenge FSB, Godoy MG, Fast M, Workenhe S, Kibenge MJT, Antiviral Res 2012 95 257 281
3. McCauley JW, Hongo S, Kaverin NV, Kochs G, Lamb RA, et al. Family Orthomyxoviridae. In Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses San Diego, CA: Academic Press, King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, 2011 749 761
4. Characterization of the infectious salmon anemia virus genomic segment that encodes the putative hemagglutinin. Rimstad E, Mjaaland S, Snow M, Mikalsen AB, Cunningham CO, J Virol 2001 75 5352 5356 (Pubitemid 32448557)
5. Phylogenetic analysis of infectious salmon anaemia virus isolates from Norway, Canada and Scotland. Krossøy B, Nilsen F, Falk K, Endresen C, Nylund A, Dis Aquat Org 2001 44 1 6 (Pubitemid 32165860)
6. Identification and characterization of viral structural proteins of infectious salmon anemia virus. Falk K, Aspehaug V, Vlasak R, Endresen C, J Virol 2004 78 3063 3071 (Pubitemid 38314364)
7. Characterization of the infectious salmon anemia virus fusion protein. Aspehaug V, Mikalsen AB, Snow M, Biering E, Villoing S, J Virol 2005 79 12544 12553 (Pubitemid 41346117)
8. Infectious salmon anaemia virus (ISAV) isolated from the ISA disease outbreaks in Chile diverged from ISAV isolates from Norway around 1996 and was disseminated around 2005, based on surface glycoprotein gene sequences. Kibenge FS, Kibenge MJ, Gherardelli V, Mansilla S, Lisperger A, Jarpa M, Larroquete G, Avendão F, Lara M, Gallardo A, Godoy MG, Wang Y, Virology J 2009 6 88
9. Scientific opinion on infectious salmon anaemia. European Food Safety Authority (EFSA) Panel on Animal Health and Welfare (AHAW), EFSA Journal 2012 10 2971 http://www.efsa.europa.eu/en/efsajournal/pub/2971.htm
10. Detection of HPR0 in Denmark and criteria for diagnosis of ISA. Skall HF, Report on the 15th Annual Meeting of the National Reference Laboratories for Fish Diseases Copenhagen, Denmark 2011 48 49 Available online: http://www.crl-fish.eu/upload/sites/eurl-fish/activities/annual-meetings/ 15-am-report.pdf
11. Surveillance for infectious salmon anaemia virus HPR0 in marine Atlantic salmon farms across Scotland. McBeath AJA, Bain N, Snow M, Dis Aquat Org 2009 87 161 169
12. A low-pathogenic variant of infectious salmon anemia virus (ISAV-HPR0) is highly prevalent and causes a non-clinical transient infection in farmed Atlantic salmon (Salmo salar L.) in the Faroe islands. Christiansen DH, Østergaard PS, Snow M, Dale OB, Falk K, J Gen Virol 2011 92 909 918
13. Polymorphism in the infectious salmon anaemia virus haemagglutinin gene: importance and possible implications for evolution and ecology of infectious salmon anaemia disease. Mjaaland S, Hungnes O, Teig A, Dannevig BH, Thorud K, Rimstad E, Virology 2002 304 379 391 (Pubitemid 36069177)
14. A novel variant of the infectious salmon anaemia virus (ISAV) haemagglutinin gene suggests mechanisms for virus diversity. Cunningham C, Gregory A, Black J, Simpson I, Raynard R, Bull Eur Assoc Fish Pathol 2002 22 366 374 (Pubitemid 135707399)
15. Identification and characterization of infectious salmon anemia virus (ISAV) hemagglutinin gene highly polymorphic region (HPR) type 0 in North America. Cook-Versloot M, Griffiths S, Cusack R, McGeachy S, Ritchie R, Bull Eur Assoc Fish Path 2004 24 203 208 (Pubitemid 39351187)
16. Haemorrhagic smolt syndrome (HSS) in Norway: pathology and associated virus-like particles. Nylund A, Plarre H, Hodneland K, Devold M, Aspehaug V, Aarseth M, Koren C, Watanabe K, Dis Aquat Org 2003 54 15 27 (Pubitemid 36391598)
17. Transmission of infectious salmon anaemia virus in farmed populations of Atlantic salmon (Salmo salar). Nylund A, Plarre H, Karlsen M, Fridell F, Otten KF, Baratland A, Sæther PA, Arch Virol 2007 152 151 179 (Pubitemid 44974622)
18. Evolutionary mechanisms involved in the virulence of infectious salmon anaemia virus (ISAV), a piscine orthomyxovirus. Markussen T, Jonassen CM, Numanovic S, Braaen S, Hjortaas M, Nilsen H, Mjaaland S, Virology 2008 374 515 527
19. Use of molecular epidemiology to trace transmission pathways for infectious salmon anaemia virus (ISAV) in Norwegian salmon farming. Lyngstad T, Hjortaas M, Kristoffersen A, Markussen T, Karlsen E, Jonassen C, Jansen P, Epidemics 2011 3 1 11
20. Low virulent infectious salmon anaemia virus (ISAV-HPR0) is prevalent and geographically structured in Norwegian salmon farming. Lyngstad TM, Kristoffersen AB, Hjortaas MJ, Devold M, Aspehaug V, Larssen RB, Jansen PA, Dis Aquat Org 2012 101 197 206
21. Evolution of infectious salmon anaemia virus (ISA virus). Plarre H, Nylund A, Karlsen M, Brevik Ø Sæther PA, Vike S, Arch Virol 2012 157 2309 2326
22. First detection, isolation and molecular characterization of infectious salmon anaemia virus associated with clinical disease in farmed Atlantic salmon (Salmo salar) in Chile. Godoy MG, Aedo A, Kibenge MJT, Groman DB, Yason CV, Grothusen H, Lisperguer A, Calbucura M, Avendaño F, Imilán M, Jarpa M, Kibenge FSB, BMC Vet Res 2008 4 28
23. ISA virus in Chile: evidence of vertical transmission. Vike S, Nylund S, Nylund A, Arch Virol 2009 154 1 8
24. Bioinformatic analysis of the genome of infectious salmon anemia virus associated with outbreaks with high mortality in Chile. Cottet L, Cortez-San Martin M, Tello M, Olivares E, Rivas-Aravena A, Vallejos E, Sandino AM, Spencer E, J Virol 2010 84 11916 11928
25. Farm-level reproduction number during an epidemic of infectious salmon anemia virus in southern Chile in 2007-2009. Mardones FO, Perez AM, Valdes-Donoso P, Carpenter TE, Prev Vet Med 2011 2011 102 175 184
26. Epidemiological investigation into the re-emergence and control of an outbreak of infectious salmon anaemia in the Shetland Islands, Scotland. Murray AG, Munro LA, Wallace IS, Berx B, Pendrey D, Fraser D, Raynard RS, Dis Aquat Org 2010 91 189 200
27. Alvial A, Kibenge F, Forster J, Burgos JM, Ibarra R, St-Hilaire S, The Recovery of the Chilean salmon industry: The ISA crisis and its consequences and lessons Global Aquaculture Alliance ISA Report http://www.gaalliance.org/ cmsAdmin/uploads/GAA-ISA-Report.pdf (Published 2012-02-23. Consulted 2013-05-09)
28. Mapping of putative virulence motifs on infectious salmon anaemia virus surface glycoprotein genes. Kibenge FSB, Kibenge MJT, Wang Y, Qian B, Hariharan S, McGeachy S, J Gen Virol 2007 88 3100 3111 (Pubitemid 350131251)
29. Models of parasite virulence. Frank SA, Quarterly Rev Biol 1996 71 37 78
30. Epidemiology meets evolutionary ecology. Galvani AP, TRENDS Ecol Evol 2003 18 132 139 (Pubitemid 36391420)
31. Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland. Pulkkinen K, Suomalainen L-R, Read AF, Ebert D, Rintamäki P, Valtonen ET, Proc R Soc B 2010 277 593 600
32. Sernapesca, Listado de centros positivos. Programa Anemia Infecciosa del salmón 2010 http://www.sernapesca.cl/index.php?option=com- content&view=article&id=588&Itemid=695
33. A morphological study of the gross and light microscopic lesions of infectious anaemia in Atlantic salmon Salmo salar. Evensen O, Thorud KE, Olsen YA, Res Vet Sci 1991 51 215 222 35
34. A sequential study of the light and electron microscopical liver lesions of infectious anemia in Atlantic salmon Salmo salar L. Speilberg L, Evensen O, Dannevig BH, Vet Pathol 1995 32 466 478
35. Experimental infection of Atlantic salmon, Salmo salar L., with infectious salmon naemia virus: a histopathological study. Simko E, Brown LL, MacKinnon AM, Byrne PJ, Ostland VE, Ferguson HW, J Fish Dis 2000 23 27 32 (Pubitemid 30184025)
36. Cohabitation transmission of infectious salmon anemia virus among freshwater-reared Atlantic salmon. Jones SRM, Groman DB, J Aquat Ani Health 2001 13 340 346 (Pubitemid 34049981)
37. Correlation of virus distribution in tissues with histologic lesions in Atlantic salmon experimentally infected with infectious salmon anaemia virus. Moneke E, Groman D, Johnson GR, Wright GM, Stryhn H, Ikede BO, Kibenge FSB, Vet Pathol 2005 42 338 349 (Pubitemid 40704825)
38. Detection of infectious salmon anaemia virus by real-time RT-PCR. Munir K, Kibenge FSB, J Virol Methods 2004 117 37 47 (Pubitemid 38281283)
39. Development, application and validation of a Taqman® real-time RT-PCR assay for the detection of infectious salmon anaemia virus (ISAV) in Atlantic salmon (Salmo salar). Snow M, McKay P, McBeath AJA, Black J, Doig F, Kerr R, Cunningham CO, Nylund A, Devold M, Dev Biol Standardization 2006 126 133 145 (Pubitemid 44379032)
40. Heart and skeletal muscle inflammation of farmed salmon is associated with infection with a novel reovirus. Palacios G, Lovoll M, Tengs T, Hornig M, Hutchison S, et al. PLoS One 2010 5 11487
41. Development and validation of a reverse transcription quantitative PCR for universal detection of viral hemorrhagic septicemia virus. Garver KA, Hawley LM, McClure CA, Schroeder T, Aldous S, Doig F, Snow M, Edes S, Baynes C, Richard J, Dis Aquat Org 2011 95 97 112
42. Quantitation of ranaviruses in cell culture and tissue samples. Holopainen R, Honkanen J, Jensen BB, Ariel E, Tapiovaara H, J Virol Meth 2011 171 225 233
43. New subtype of almonid alphavirus (SAV), Togaviridae, from Atlantic salmon Salmo salar and rainbow trout Oncorhynchus mykiss in Norway. Hodneland K, Bratland A, Christie KE, Endresen C, Nylund A, Dis Aquat Org 2005 66 113 120 (Pubitemid 41413739)
44. Development of a TaqMan quantitative PCR assay for the identification of Piscirickettsia salmonis. Corbeil S, McColl KA, Crane MSJ, Bull Eur Assoc Fish Pathol 2003 23 95 101 (Pubitemid 37118332)
45. A space-time per-mutation scan statistic for disease outbreak detection. Kulldorff M, Heffernan R, Hartman J, Assunção R, Mostashari F, PLoS Med 2005 2 216 224
46. Breast cancer clusters in the northeast United States: a geographic analysis. Kulldorff M, Feuer EJ, Miller BA, Freedman LS, Am J Epidemiol 1997 146 161 170
47. Software for the spatial, temporal, and space-time scan statistics, SaTScan™v9.1.1released March 9 2011 Available from http://www.satscan.org/
48. R Development Core Team, R: A language and environment for statistical computing Vienna, Austria: R Foundation for Statistical Computing 2008 ISBN 3-900051-07-0, URL http://www.R-project.org
49. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A, Geneious v6.0.4 2012 Available from http://www.geneious.com
50. Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, J Mol Biol 1990 215 403 410
51. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Saitou N, Nei M, Mol Biol Evol 1987 4 406 425