Farm-level reproduction number during an epidemic of infectious salmon anemia virus in southern Chile in 2007-2009

Preventive Veterinary Medicine

Volumn 102, Issue 3, 2011, Pages 175-184

  Mardones, F O ^a,b   Perez, A M ^a,c   Valdes Donoso, P ^a   Carpenter, T E ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b EpiVet Consulting   (Chile)

^c Facultad de Ciencias Veterinarias UNR ^*  (Argentina)

Author keywords

Chile; Farm level reproduction number; ISAV; Modeling infectious diseases; Salmon farming

Indexed keywords

ANIMAL; ANIMAL DISEASE; AQUACULTURE; ARTICLE; BASIC REPRODUCTION NUMBER; CHILE; CLUSTER ANALYSIS; COMMUNICABLE DISEASE; DISEASE TRANSMISSION; EPIDEMIC; FISH DISEASE; HEALTH SURVEY; ORTHOMYXOVIRUS; ORTHOMYXOVIRUS INFECTION; SALMON;

ANIMALS; AQUACULTURE; BASIC REPRODUCTION NUMBER; CHILE; CLUSTER ANALYSIS; COMMUNICABLE DISEASES, EMERGING; EPIDEMICS; FISH DISEASES; ISAVIRUS; ORTHOMYXOVIRIDAE INFECTIONS; POPULATION SURVEILLANCE; SALMON;

ANIMALIA; INFECTIOUS SALMON ANEMIA VIRUS;

EID: 82555167068     PISSN: 01675877     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.prevetmed.2011.07.005     Document Type: Article

References (29)

1. Anderson R.M., Medley G.F., May R.M., Johnson A.M. A preliminary study of the transmission dynamics of the human immunodeficiency virus (HIV), the causative agent of AIDS. IMA J. Math. Appl. Med. Biol. 1986, 3:229-263.
2. Anonymous Salmon Virus Detected in Clew Bay Fish Farm 2002, The Irish Times, Dublin.
3. Anselin L. Local indicators of spatial association - LISA. Geogr. Anal. 1995, 27:93-115.
4. Asche F., Hansen H., Tveteras R., Tveteras S. The salmon disease crisis in Chile. Mar. Resour. Econ. 2009, 24:405-411.
5. Cottet L., Cortez-San Martin M., Tello M., Olivares E., Rivas-Aravena A., Vallejos E., Sandino A.M., Spencer E. Bioinformatic analysis of the genome of infectious salmon anemia viruses associated with outbreaks of high mortality in Chile. J. Virol. 2010, 84:11916-11928.
6. Dieckmann O., Heesterbeek J.A.P. Mathematical Epidemiology of Infectious Diseases: Model Building, Analysis and Interpretation 2000, Wiley, Hoboken, NJ.
7. FIS Salmon Industry Lost USD 2,000 Million Due to ISA Virus 2010, Fish Information & Services, Tokyo, Japan. http://www.fis.com/fis/worldnews/worldnews.asp%3Fl=e%26id=39160%26ndb=1.
8. Galvani A.P., May R.M. Epidemiology: dimensions of superspreading. Nature 2005, 438:293-295.
9. Garske T., Rhodes C.J. The effect of superspreading on epidemic outbreak size distributions. J. Theor. Biol. 2008, 253:228-237.
10. Godoy M.G., Aedo A., Kibenge M.J., Groman D.B., Yason C.V., Grothusen H., Lisperguer A., Calbucura M., Avendano F., Imilan M., Jarpa M., Kibenge F.S. First detection, isolation and molecular characterization of infectious salmon anaemia virus associated with clinical disease in farmed Atlantic salmon (Salmo salar) in Chile. BMC Vet. Res. 2008, 4:28.
11. Gustafson L., Ellis S., Robinson T., Marenghi F., Merrill P., Hawkins L., Giray C., Wagner B. Spatial and non-spatial risk factors associated with cage-level distribution of infectious salmon anaemia at three Atlantic salmon, Salmo salar L., farms in Maine, USA. J. Fish Dis. 2007, 30:101-109.
12. Gustafson L.L., Ellis S.K., Beattie M.J., Chang B.D., Dickey D.A., Robinson T.L., Marenghi F.P., Moffett P.J., Page F.H. Hydrographics and the timing of infectious salmon anemia outbreaks among Atlantic salmon (Salmo salar L.) farms in the Quoddy region of Maine, USA and New Brunswick, Canada. Prev. Vet. Med. 2007, 78:35-56.
13. Jarp J., Karlsen E. Infectious salmon anaemia (ISA) risk factors in sea-cultured Atlantic salmon Salmo salar L. Dis. Aquat. Organ. 1997, 28:79-86.
14. Kibenge F.S., Garate O.N., Johnson G., Arriagada R., Kibenge M.J., Wadowska D. Isolation and identification of infectious salmon anaemia virus (ISAV) from Coho salmon in Chile. Dis. Aquat. Organ. 2001, 45:9-18.
15. Lloyd-Smith J.O., Schreiber S.J., Kopp P.E., Getz W.M. Superspreading and the effect of individual variation on disease emergence. Nature 2005, 438:355-359.
16. Lyngstad T.M., Jansen P.A., Sindre H., Jonassen C.M., Hjortaas M.J., Johnsen S., Brun E. Epidemiological investigation of infectious salmon anaemia (ISA) outbreaks in Norway 2003-2005. Prev. Vet. Med. 2008, 84:213-227.
17. Mardones F.O., Perez A.M., Carpenter T.E. Epidemiologic investigation of the re-emergence of infectious salmon anemia virus in Chile. Dis. Aquat. Organ. 2009, 84:105-114.
18. Martin S.W., Meek A.H., Willeberg P. Veterinary Epidemiology: Principles and Methods 1987, Iowa State University Press, Ames.
19. Matthews L., Low J.C., Gally D.L., Pearce M.C., Mellor D.J., Heesterbeek J.A., Chase-Topping M., Naylor S.W., Shaw D.J., Reid S.W., Gunn G.J., Woolhouse M.E. Heterogeneous shedding of Escherichia coli O157 in cattle and its implications for control. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:547-552.
20. McClure C.A., Hammell K.L., Dohoo I.R. Risk factors for outbreaks of infectious salmon anemia in farmed Atlantic salmon, Salmo salar. Prev. Vet. Med. 2005, 72:263-280.
21. Mitchell A. The ESRI gGuide to GIS Analysis. Volume 2, Spatial Measurements & Statistics 2005, ESRI Press, Redlands (CA).
22. Murray A.G., Munro L.A., Wallace I.S., Berx B., Pendrey D., Fraser D.I., Raynard R. Epidemiological investigation into the re-emergence and control of an outbreak of infectious salmon anaemia in the Shetland Islands, Scotland. Dis. Aquat. Organ. 2010, 91:189-200.
23. OIE Diagnostic Manual for Aquatic Animal Diseases (Chapter 2.3.5.: Infectious Salmon Anaemia) 2009, World Organization for Animal Health (OIE), Paris, France. http://www.oie.int/fileadmin/Home/eng/Health_standards/aahm/2009/2.3.05_ISA%2520.pdf.
24. Plarre H., Devold M., Snow M., Nylund A. Prevalence of infectious salmon anaemia virus (ISAV) in wild salmonids in western Norway. Dis. Aquat. Organ. 2005, 66:71-79.
25. Pybus O.G., Charleston M.A., Gupta S., Rambaut A., Holmes E.C., Harvey P.H. The epidemic behavior of the hepatitis C virus. Science 2001, 292:2323-2325.
26. Raynard R.S., Murray A.G., Gregory A. Infectious salmon anaemia virus in wild fish from Scotland. Dis. Aquat. Organ. 2001, 46:93-100.
27. Smith C.E. Factors in the transmission of virus infections from animals to man. Sci. Basis Med. Annu. Rev. 1964, 125-150.
28. Woolhouse M.E., Dye C., Etard J.F., Smith T., Charlwood J.D., Garnett G.P., Hagan P., Hii J.L., Ndhlovu P.D., Quinnell R.J., Watts C.H., Chandiwana S.K., Anderson R.M. Heterogeneities in the transmission of infectious agents: implications for the design of control programs. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:338-342.
29. Woolhouse M.E., Shaw D.J., Matthews L., Liu W.C., Mellor D.J., Thomas M.R. Epidemiological implications of the contact network structure for cattle farms and the 20-80 rule. Biol. Lett. 2005, 1:350-352.