-
1
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Anderson CL, Jensen JL, Ømtoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64:5245-5250.
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Anderson, C.L.1
Jensen, J.L.2
Ømtoft, T.F.3
-
2
-
-
0030698372
-
Tissue-specific expression of a dehydrin gene in one-year-old rio oso gem peach trees
-
Artlip TS, Wisniewski ME (1997) Tissue-specific expression of a dehydrin gene in one-year-old Rio Oso Gem peach trees. J Am Soc Hortic Sci 122:784-787.
-
(1997)
J Am Soc Hortic Sci
, vol.122
, pp. 784-787
-
-
Artlip, T.S.1
Wisniewski, M.E.2
-
3
-
-
0031054922
-
Seasonal expression of a dehydrin gene in sibling deciduous and evergreen genotypes of peach (prunus persica [l.] batsch)
-
Artlip TS, Callahan AS, Bassett CL, Wisniewski ME (1997) Seasonal expression of a dehydrin gene in sibling deciduous and evergreen genotypes of peach (Prunus persica [L.] Batsch). Plant Mol Biol 33:61-70.
-
(1997)
Plant Mol Biol
, vol.33
, pp. 61-70
-
-
Artlip, T.S.1
Callahan, A.S.2
Bassett, C.L.3
Wisniewski, M.E.4
-
4
-
-
0002809856
-
The phase-angle difference in circadian periodicity
-
Aschoff J (eds), North Holland Press, Amsterdam
-
Aschoff J (1965) The phase-angle difference in circadian periodicity. In: Aschoff J (eds) Circadian clocks. North Holland Press, Amsterdam, pp 262-278.
-
(1965)
Circadian Clocks
, pp. 262-278
-
-
Aschoff, J.1
-
5
-
-
0028385745
-
The 5′-region of arabidopsis thaliana cor15a has cis-acting elements that confer cold, drought, and aba-regulated gene expression
-
Baker SS, Wilhelm KS, Thomashow MF (1994) The 5′-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold, drought, and ABA-regulated gene expression. Plant Mol Biol 24:701-713.
-
(1994)
Plant Mol Biol
, vol.24
, pp. 701-713
-
-
Baker, S.S.1
Wilhelm, K.S.2
Thomashow, M.F.3
-
6
-
-
84866390475
-
Functional characterization of two almond c-repeat-binding factors involved in cold response
-
Barros PM, Goncalves N, Saibo NJM, Oliveira MM (2012) Functional characterization of two almond C-repeat-binding factors involved in cold response. Tree Physiol 32:1113-1128.
-
(2012)
Tree Physiol
, vol.32
, pp. 1113-1128
-
-
Barros, P.M.1
Goncalves, N.2
Saibo, N.J.M.3
Oliveira, M.M.4
-
7
-
-
33746329926
-
Global analysis of genes regulated by low temperature and photoperiod in peach bark
-
Bassett CL, Wisniewski ME, Artlip TS, Norelli JL, Renaut J, Farrell RE Jr (2006) Global analysis of genes regulated by low temperature and photoperiod in peach bark. J Am Soc Hortic Sci 131:551-563.
-
(2006)
J Am Soc Hortic Sci
, vol.131
, pp. 551-563
-
-
Bassett, C.L.1
Wisniewski, M.E.2
Artlip, T.S.3
Norelli, J.L.4
Renaut, J.5
Farrell Jr., R.E.6
-
8
-
-
67349110442
-
Comparative expression profiling and transcript initiation of three peach dehydrin genes
-
Bassett CL, Wisniewski ME, Artlip TS, Richart G, Norelli JL, Farrell RE Jr (2009) Comparative expression profiling and transcript initiation of three peach dehydrin genes. Planta 230:107-118.
-
(2009)
Planta
, vol.230
, pp. 107-118
-
-
Bassett, C.L.1
Wisniewski, M.E.2
Artlip, T.S.3
Richart, G.4
Norelli, J.L.5
Farrell Jr., R.E.6
-
9
-
-
33744470399
-
The cbf1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in populus spp
-
Benedict C, Skinner JS, Meng R, Chang Y, Bhalerao R, Huner NPA, Finn CE, Chen THH, Hurry V (2006) The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp. Plant Cell Environ 29:1259-1272.
-
(2006)
Plant Cell Environ
, vol.29
, pp. 1259-1272
-
-
Benedict, C.1
Skinner, J.S.2
Meng, R.3
Chang, Y.4
Bhalerao, R.5
Huner, N.P.A.6
Finn, C.E.7
Chen, T.H.H.8
Hurry, V.9
-
10
-
-
60549111213
-
PlantPAN: Plant promoter analysis navigator for identifying combinatorial cis-regulatory elements with distance constrain in plant gene group
-
Chang WC, Lee TY, Huang HD, Pan RL (2008) PlantPAN: plant promoter analysis navigator for identifying combinatorial cis-regulatory elements with distance constrain in plant gene group. BMC Genomics 9:561.
-
(2008)
BMC Genomics
, vol.9
, pp. 561
-
-
Chang, W.C.1
Lee, T.Y.2
Huang, H.D.3
Pan, R.L.4
-
11
-
-
66449131193
-
Roles for arabidopsis camta transcription factors in cold-regulated gene expression and freezing tolerance
-
Doherty CJ, Van Buskerk HA, Myers SJ, Thomashow MF (2009) Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 21:972-984.
-
(2009)
Plant Cell
, vol.21
, pp. 972-984
-
-
Doherty, C.J.1
Van Buskerk, H.A.2
Myers, S.J.3
Thomashow, M.F.4
-
12
-
-
79955551575
-
Circadian clock-associated1 and late elongated hypocotyl regulated expression of the c-repeat binding factor (CBF) pathway in arabidopsis
-
Dong MA, Farre EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED1 and LATE ELONGATED HYPOCOTYL regulated expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. Proc Natl Acad Sci USA 108:7241-7246.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7241-7246
-
-
Dong, M.A.1
Farre, E.M.2
Thomashow, M.F.3
-
13
-
-
33747879857
-
Expression profile of CBF-like transcriptional factor genes from eucalyptus in response to cold
-
El Kayal W, Navarro M, Marque G, Keller G, Marque C, Teulières C (2006) Expression profile of CBF-like transcriptional factor genes from Eucalyptus in response to cold. J Exp Bot 57:2455-2469.
-
(2006)
J Exp Bot
, vol.57
, pp. 2455-2469
-
-
El Kayal, W.1
Navarro, M.2
Marque, G.3
Keller, G.4
Marque, C.5
Teulières, C.6
-
14
-
-
18744413036
-
Low temperature induction of arabidopsis CBF1, 2, and 3 is gated by the circadian clock
-
Fowler SG, Cook D, Thomashow MF (2005) Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol 137:961-968.
-
(2005)
Plant Physiol
, vol.137
, pp. 961-968
-
-
Fowler, S.G.1
Cook, D.2
Thomashow, M.F.3
-
15
-
-
0038586491
-
Comparison of peach and arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods
-
Georgi LL, Wang Y, Reighard GL, Mao L, Wing RA, Abbott AG (2003) Comparison of peach and Arabidopsis genomic sequences: fragmentary conservation of gene neighborhoods. Genome 46:268-276.
-
(2003)
Genome
, vol.46
, pp. 268-276
-
-
Georgi, L.L.1
Wang, Y.2
Reighard, G.L.3
Mao, L.4
Wing, R.A.5
Abbott, A.G.6
-
16
-
-
0032213180
-
Low temperature regulation of the arabidopsis CBF family of ap2 transcriptional activators as an early step in cold-induced COR gene expression
-
Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF (1998) Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J 14:433-442.
-
(1998)
Plant J
, vol.14
, pp. 433-442
-
-
Gilmour, S.J.1
Zarka, D.G.2
Stockinger, E.J.3
Salazar, M.P.4
Houghton, J.M.5
Thomashow, M.F.6
-
17
-
-
0034671791
-
Orchestrated transcription of key pathways in arabidopsis by the circadian clock
-
Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-2113.
-
(2000)
Science
, vol.290
, pp. 2110-2113
-
-
Harmer, S.L.1
Hogenesch, J.B.2
Straume, M.3
Chang, H.S.4
Han, B.5
Zhu, T.6
Wang, X.7
Kreps, J.A.8
Kay, S.A.9
-
18
-
-
11444253975
-
Low temperature, but not photoperiod, controls growth cessation and dormancy induction and release in apple and pear
-
Heide OM, Prestrud AK (2005) Low temperature, but not photoperiod, controls growth cessation and dormancy induction and release in apple and pear. Tree Physiol 25:109-114.
-
(2005)
Tree Physiol
, vol.25
, pp. 109-114
-
-
Heide, O.M.1
Prestrud, A.K.2
-
19
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
-
Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27:297-300.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
Korenaga, T.4
-
20
-
-
0036085047
-
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
-
Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouze P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325-327.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 325-327
-
-
Lescot, M.1
Dehais, P.2
Thijs, G.3
Marchal, K.4
Moreau, Y.5
Van De Peer, Y.6
Rouze, P.7
Rombauts, S.8
-
22
-
-
33646832415
-
Genome-wide analysis of the erf gene family in arabidopsis and rice
-
Nakano T, Suzuki K, Fujimura T, Shinshi H (2006) Genome-wide analysis of the Erf gene family in Arabidopsis and rice. Plant Physiol 140:411-432.
-
(2006)
Plant Physiol
, vol.140
, pp. 411-432
-
-
Nakano, T.1
Suzuki, K.2
Fujimura, T.3
Shinshi, H.4
-
23
-
-
67649333165
-
Complementary regulation of four eucalyptus cbf genes under various cold conditions
-
Navarro M, Marque G, Ayax C, Keller G, Borges JP, Marque C, Teulières C (2009) Complementary regulation of four Eucalyptus CBF genes under various cold conditions. J Exp Bot 60:2713-2724.
-
(2009)
J Exp Bot
, vol.60
, pp. 2713-2724
-
-
Navarro, M.1
Marque, G.2
Ayax, C.3
Keller, G.4
Borges, J.P.5
Marque, C.6
Teulières, C.7
-
24
-
-
27144456802
-
Housekeeping gene selection for real-time rt-pcr normalization in potato during biotic and abiotic stress
-
Nicot N, Hausman J-F, Hoffmann L, Evers D (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J Exp Bot 56:2907-2914.
-
(2005)
J Exp Bot
, vol.56
, pp. 2907-2914
-
-
Nicot N, H.J.-F.1
Hoffmann L, E.D.2
-
25
-
-
1642289015
-
CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in arabidopsis
-
Novillo F, Alonso JM, Ecker JR, Salinas J (2004) CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proc Natl Acad Sci USA 101:3985-3990.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 3985-3990
-
-
Novillo, F.1
Alonso, J.M.2
Ecker, J.R.3
Salinas, J.4
-
26
-
-
38049112842
-
Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the cbf regulon
-
Novillo F, Medina J, Salinas J (2007) Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. Proc Natl Acad Sci USA 104:21002-21007.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 21002-21007
-
-
Novillo, F.1
Medina, J.2
Salinas, J.3
-
27
-
-
36248982734
-
Differential expansion and expression of α- And β-tubulin gene familes in populus
-
Oakley RV, Want Y-S, Ramakrishna W, Harding SA, Tsai C-J (2007) Differential expansion and expression of α- And β-tubulin gene familes in Populus. Plant Physiol 145:961-973.
-
(2007)
Plant Physiol
, vol.145
, pp. 961-973
-
-
Oakley, R.V.1
Want, Y.-S.2
Ramakrishna, W.3
Harding, S.A.4
Tsai, C.-J.5
-
28
-
-
80052892321
-
Achievements and challenges in understanding plant abiotic stress responses
-
Qin F, Shinozaki K, Yamaguchi-Shinozaki K (2011) Achievements and challenges in understanding plant abiotic stress responses. Plant Cell Physiol 52:1569-1582.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 1569-1582
-
-
Qin, F.1
Shinozaki, K.2
Yamaguchi-Shinozaki, K.3
-
29
-
-
0036290601
-
Dna-binding specificity of the Erf/AP2 domain of arabidopsis DREBS, transcription factors involved in dehydration- And cold-inducible gene expression
-
Sakuma Y, Liu Q, Dobouzer JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K (2002) DNA-binding specificity of the Erf/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- And cold-inducible gene expression. Biochem Biophys Res Commun 290:998-1009.
-
(2002)
Biochem Biophys Res Commun
, vol.290
, pp. 998-1009
-
-
Sakuma, Y.1
Liu, Q.2
Dobouzer, J.G.3
Abe, H.4
Shinozaki, K.5
Yamaguchi-Shinozaki, K.6
-
30
-
-
0032497260
-
An arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression
-
Shinwari ZK, Nakashima K, Miura S, Kasuga M, Seki M, Yamaguchi-Shinozaki K, Shinozaki K (1998) An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem Biophys Res Commun 250:161-170.
-
(1998)
Biochem Biophys Res Commun
, vol.250
, pp. 161-170
-
-
Shinwari, Z.K.1
Nakashima, K.2
Miura, S.3
Kasuga, M.4
Seki, M.5
Yamaguchi-Shinozaki, K.6
Shinozaki, K.7
-
31
-
-
0034993616
-
Role of the arabidopsis CBF transcriptional activators in cold acclimation
-
Thomashow MF, Gilmour SJ, Stockinger EJ, Jaglo-Ottosen K, Zarka DG (2001) Role of the Arabidopsis CBF transcriptional activators in cold acclimation. Physiol Plant 112:171-175.
-
(2001)
Physiol Plant
, vol.112
, pp. 171-175
-
-
Thomashow, M.F.1
Gilmour, S.J.2
Stockinger, E.J.3
Jaglo-Ottosen, K.4
Zarka, D.G.5
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
68949217794
-
Selection of reliable reference genes for gene expression studies in peach using real-time PCR
-
doi:10.1186/1471-2199-10-71
-
Tong Z, Gao Z, Wang F, Zhou J, Zhang Z (2009) Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol Biol 10:71 doi:10.1186/1471-2199-10-71.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 71
-
-
Tong, Z.1
Gao, Z.2
Wang, F.3
Zhou, J.4
Zhang, Z.5
-
34
-
-
51549098247
-
Involvement of CBF transcription factors in winter hardiness in birch
-
Welling A, Palva ET (2008) Involvement of CBF transcription factors in winter hardiness in birch. Plant Physiol 147:1199-1211.
-
(2008)
Plant Physiol
, vol.147
, pp. 1199-1211
-
-
Welling, A.1
Palva, E.T.2
-
35
-
-
33646487152
-
Effect of photoperiod and temperature on expression of two dehydrin genes from peach (prunus persica [l.] batsch)
-
Wisniewski ME, Bassett CL, Renaut J, Farrell R Jr, Tworkoski T, Artlip TS (2006) Effect of photoperiod and temperature on expression of two dehydrin genes from peach (Prunus persica [L.] Batsch). Tree Physiol 26:575-584.
-
(2006)
Tree Physiol
, vol.26
, pp. 575-584
-
-
Wisniewski, M.E.1
Bassett, C.L.2
Renaut, J.3
Farrell Jr., R.4
Tworkoski, T.5
Artlip, T.S.6
-
36
-
-
79954424522
-
Ectopic expression of a novel peach (prunus persica) cbf transcription factor in apple (malus × domestica) results in short-day induced dormancy and increased cold hardiness
-
Wisniewski M, Norelli J, Bassett C, Artlip T, Macarisin D (2011) Ectopic expression of a novel peach (Prunus persica) CBF transcription factor in apple (Malus × domestica) results in short-day induced dormancy and increased cold hardiness. Planta 233:971-983.
-
(2011)
Planta
, vol.233
, pp. 971-983
-
-
Wisniewski, M.1
Norelli, J.2
Bassett, C.3
Artlip, T.4
MacArisin, D.5
-
37
-
-
84884669119
-
Genomics of cold hardiness in woody plants
-
In press
-
Wisniewski M, Nassuth A, Teulieres C, Marque C, Rowland J, Cao P-B, Brown A (2013) Genomics of cold hardiness in woody plants. Crit Rev Plant Sci. In press.
-
(2013)
Crit Rev Plant Sci
-
-
Wisniewski, M.1
Nassuth, A.2
Teulieres, C.3
Marque, C.4
Rowland, J.5
Cao, P.-B.6
Brown, A.7
-
38
-
-
33744956146
-
Three grape CBF/DREB1 genes respond to low temperature, drought, and abscisic acid
-
Xiao H, Siddiqua M, Braybrook S, Nassuth A (2006) Three grape CBF/DREB1 genes respond to low temperature, drought, and abscisic acid. Plant Cell Environ 29:1410-1421.
-
(2006)
Plant Cell Environ
, vol.29
, pp. 1410-1421
-
-
Xiao, H.1
Siddiqua, M.2
Braybrook, S.3
Nassuth, A.4
-
39
-
-
36749000592
-
CBF4 is a unique member of the CBF transcription factor family of vitis vinifera and vitis riparia
-
Xiao H, Tattersal E, Siddiqua M, Cramer G, Nassuth A (2008) CBF4 is a unique member of the CBF transcription factor family of Vitis vinifera and Vitis riparia. Plant Cell Environ 31:1-10.
-
(2008)
Plant Cell Environ
, vol.31
, pp. 1-10
-
-
Xiao, H.1
Tattersal, E.2
Siddiqua, M.3
Cramer, G.4
Nassuth, A.5
-
40
-
-
0028370581
-
A novel cis-acting element in an arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress
-
Yamaguchi-Shinozaki K, Shinozaki K (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell 6:251-264.
-
(1994)
Plant Cell
, vol.6
, pp. 251-264
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
41
-
-
0142245605
-
Cold induction of arabidopsis cbf genes involved multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature
-
Zarka DG, Vogel JT, Cook D, Thomashow MF (2003) Cold induction of Arabidopsis CBF genes involved multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature. Plant Physiol 133:910-918.
-
(2003)
Plant Physiol
, vol.133
, pp. 910-918
-
-
Zarka, D.G.1
Vogel, J.T.2
Cook, D.3
Thomashow, M.F.4
|