A kinetic safety gate controlling the delivery of unnatural amino acids to the ribosome

Journal of the American Chemical Society

Volumn 135, Issue 45, 2013, Pages 17031-17038

  Mittelstaet, Joerg ^a   Konevega, Andrey L ^a,b   Rodnina, Marina V ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^b PETERSBURG NUCLEAR PHYSICS INSTITUTE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ELONGATION FACTOR TU; MODEL PROTEINS; TRNA BINDING; UNNATURAL AMINO ACIDS;

MACROMOLECULES; PROTEINS;

AMINO ACIDS;

AMINO ACID; ELONGATION FACTOR TU; GUANOSINE TRIPHOSPHATE; LYSINE; PEPTIDE; PROTEIN; TRANSFER RNA;

AMINO ACID TRANSPORT; ARTICLE; BINDING KINETICS; CONTROLLED STUDY; DISSOCIATION; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MOLECULAR MODEL; NONHUMAN; PROTEIN BINDING; RIBOSOME;

BACTERIAL PROTEINS; BORON COMPOUNDS; ESCHERICHIA COLI; FLUORESCENT DYES; GUANOSINE TRIPHOSPHATE; KINETICS; LYSINE; MODELS, MOLECULAR; PEPTIDE ELONGATION FACTOR TU; RIBOSOMES; RNA, TRANSFER; THERMUS THERMOPHILUS;

EID: 84887780795     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja407511q     Document Type: Article

References (44)

1. Passioura, T.; Suga, H. In Top. Curr. Chem. 2013, 2013/03/13 ed.
2. Davis, L.; Chin, J. W. Nat. Rev. Mol. Cell Biol. 2012, 13, 168
3. Liu, C. C.; Schultz, P. G. Annu. Rev. Biochem. 2010, 79, 413
4. Wang, K.; Schmied, W. H.; Chin, J. W. Angew. Chem., Int. Ed. 2012, 51, 2288
5. Zhang, G.; Hubalewska, M.; Ignatova, Z. Nat. Struct. Mol. Biol. 2009, 16, 274
6. Komar, A. A. Trends. Biochem. Sci. 2009, 34, 16
7. LaRiviere, F. J.; Wolfson, A. D.; Uhlenbeck, O. C. Science 2001, 294, 165
8. Schrader, J. M.; Chapman, S. J.; Uhlenbeck, O. C. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 5215
9. Wohlgemuth, I.; Pohl, C.; Mittelstaet, J.; Konevega, A. L.; Rodnina, M. V. Philos. Trans. R. Soc., B 2011, 366, 2979
10. Wu, N.; Deiters, A.; Cropp, T. A.; King, D.; Schultz, P. G. J. Am. Chem. Soc. 2004, 126, 14306
11. Hancock, S. M.; Uprety, R.; Deiters, A.; Chin, J. W. J. Am. Chem. Soc. 2010, 132, 14819
12. Ieong, K. W.; Pavlov, M. Y.; Kwiatkowski, M.; Forster, A. C.; Ehrenberg, M. J. Am. Chem. Soc. 2012, 134, 17955
13. Chapman, S. J.; Schrader, J. M.; Uhlenbeck, O. C. J. Biol. Chem. 2012, 287, 1229
14. Park, H. S.; Hohn, M. J.; Umehara, T.; Guo, L. T.; Osborne, E. M.; Benner, J.; Noren, C. J.; Rinehart, J.; Soll, D. Science 2011, 333, 1151
15. Doi, Y.; Ohtsuki, T.; Shimizu, Y.; Ueda, T.; Sisido, M. J. Am. Chem. Soc. 2007, 129, 14458
16. Effraim, P. R.; Wang, J.; Englander, M. T.; Avins, J.; Leyh, T. S.; Gonzalez, R. L., Jr.; Cornish, V. W. Nat. Chem. Biol. 2009, 5, 947
17. Neumann, H.; Wang, K.; Davis, L.; Garcia-Alai, M.; Chin, J. W. Nature 2010, 464, 441
18. Woolhead, C. A.; McCormick, P. J.; Johnson, A. E. Cell 2004, 116, 725
19. Wohlgemuth, I.; Brenner, S.; Beringer, M.; Rodnina, M. V. J. Biol. Chem. 2008, 283, 32229
20. Ledoux, S.; Uhlenbeck, O. C. Mol. Cell 2008, 31, 114
21. Pavlov, M. Y.; Watts, R. E.; Tan, Z.; Cornish, V. W.; Ehrenberg, M.; Forster, A. C. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 50
22. Doerfel, L. K.; Wohlgemuth, I.; Kothe, C.; Peske, F.; Urlaub, H.; Rodnina, M. V. Science (New York, NY) 2013, 339, 85
23. Nissen, P.; Kjeldgaard, M.; Thirup, S.; Polekhina, G.; Reshetnikova, L.; Clark, B. F.; Nyborg, J. Science 1995, 270, 1464
24. Blanchard, S. C.; Gonzalez, R. L.; Kim, H. D.; Chu, S.; Puglisi, J. D. Nat. Struct. Mol. Biol 2004, 11, 1008
25. Sanbonmatsu, K. Y.; Joseph, S.; Tung, C. S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15854
26. Schmeing, T. M.; Voorhees, R. M.; Kelley, A. C.; Gao, Y. G.; Murphy, F. V. t.; Weir, J. R.; Ramakrishnan, V. Science 2009, 326, 688
27. Yusupova, G. Z.; Yusupov, M. M.; Cate, J. H.; Noller, H. F. Cell 2001, 106, 233
28. Pape, T.; Wintermeyer, W.; Rodnina, M. V. EMBO J. 1998, 17, 7490
29. Tan, Z.; Forster, A. C.; Blacklow, S. C.; Cornish, V. W. J. Am. Chem. Soc. 2004, 126, 12752
30. Bremer, H.; Dennis, P. P. In Escherichia coli and Salmonella typhimurium: cellular and Molecular Biology; Neidhardt, F. C., Ed.; American Society for Microbiology: Washington, D.C., 1987; p 1553.
31. Bensch, K.; Pieper, U.; Ott, G.; Schirmer, N.; Sprinzl, M.; Pingoud, A. Biochimie 1991, 73, 1045
32. Guo, J.; Melancon, C. E., 3rd; Lee, H. S.; Groff, D.; Schultz, P. G. Angew. Chem., Int. Ed. 2009, 48, 9148
33. Zaher, H. S.; Green, R. Cell 2009, 136, 746
34. Voorhees, R. M.; Schmeing, T. M.; Kelley, A. C.; Ramakrishnan, V. Science 2010, 330, 835
35. Schmeing, T. M.; Voorhees, R. M.; Kelley, A. C.; Ramakrishnan, V. Nat. Struct. Mol Biol 2011, 18, 432
36. Rodnina, M. V.; Fricke, R.; Kuhn, L.; Wintermeyer, W. EMBO J. 1995, 14, 2613
37. Kuhlenkoetter, S.; Wintermeyer, W.; Rodnina, M. V. Nature 2011, 476, 351
38. Sievers, A.; Beringer, M.; Rodnina, M. V.; Wolfenden, R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 7897
39. Milon, P.; Konevega, A. L.; Peske, F.; Fabbretti, A.; Gualerzi, C. O.; Rodnina, M. V. Methods Enzymol. 2007, 430, 1
40. Gite, S.; Mamaev, S.; Olejnik, J.; Rothschild, K. Anal. Biochem. 2000, 279, 218
41. Holmes, W. M.; Hurd, R. E.; Reid, B. R.; Rimerman, R. A.; Hatfield, G. W. Proc Natl. Acad. Sci. U.S.A. 1975, 72, 1068
42. Rodnina, M. V.; Savelsbergh, A.; Matassova, N. B.; Katunin, V. I.; Semenkov, Y. P.; Wintermeyer, W. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9586
43. Rodnina, M. V.; Wintermeyer, W. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 1945
44. Wieden, H. J.; Gromadski, K.; Rodnin, D.; Rodnina, M. V. J. Biol. Chem. 2002, 277, 6032