-
1
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
10.1186/gb-2010-11-12-r119, 3046479, 21143862
-
Adey A, Morrison H, Asan G, Xun X, Kitzman J, Turner E, Stackhouse B, MacKenzie A, Caruccio N, Zhang X, Shendure J. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol 2010, 11:R119. 10.1186/gb-2010-11-12-r119, 3046479, 21143862.
-
(2010)
Genome Biol
, vol.11
-
-
Adey, A.1
Morrison, H.2
Asan, G.3
Xun, X.4
Kitzman, J.5
Turner, E.6
Stackhouse, B.7
MacKenzie, A.8
Caruccio, N.9
Zhang, X.10
Shendure, J.11
-
2
-
-
84855306099
-
Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
-
10.1101/gr.124016.111, 3246199, 22090378
-
Parkinson NJ, Maslau S, Ferneyhough B, Zhang G, Gregory L, Buck D, Ragoussis J, Ponting CP, Fischer MD. Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA. Genome Res 2012, 22:125-133. 10.1101/gr.124016.111, 3246199, 22090378.
-
(2012)
Genome Res
, vol.22
, pp. 125-133
-
-
Parkinson, N.J.1
Maslau, S.2
Ferneyhough, B.3
Zhang, G.4
Gregory, L.5
Buck, D.6
Ragoussis, J.7
Ponting, C.P.8
Fischer, M.D.9
-
3
-
-
79960070912
-
Preparation of next-generation sequencing libraries using Nextera technology: simultaneous DNA fragmentation and adaptor tagging by in vitro transposition
-
Caruccio N. Preparation of next-generation sequencing libraries using Nextera technology: simultaneous DNA fragmentation and adaptor tagging by in vitro transposition. Methods Mol Biol 2011, 733:241-255.
-
(2011)
Methods Mol Biol
, vol.733
, pp. 241-255
-
-
Caruccio, N.1
-
4
-
-
83055180102
-
Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA
-
10.1128/AEM.05610-11, 3209006, 21948828
-
Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE. Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Appl Environ Microbiol 2011, 77:8071-8079. 10.1128/AEM.05610-11, 3209006, 21948828.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 8071-8079
-
-
Marine, R.1
Polson, S.W.2
Ravel, J.3
Hatfull, G.4
Russell, D.5
Sullivan, M.6
Syed, F.7
Dumas, M.8
Wommack, K.E.9
-
5
-
-
84861904633
-
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
-
10.1101/gr.136242.111, 3371708, 22466172
-
Adey A, Shendure J. Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing. Genome Res 2012, 22:1139-1143. 10.1101/gr.136242.111, 3371708, 22466172.
-
(2012)
Genome Res
, vol.22
, pp. 1139-1143
-
-
Adey, A.1
Shendure, J.2
-
6
-
-
84855331824
-
Transposase mediated construction of RNA-seq libraries
-
10.1101/gr.127373.111, 3246200, 22128135
-
Gertz J, Varley KE, Davis NS, Baas BJ, Goryshin IY, Vaidyanathan R, Kuersten S, Myers RM. Transposase mediated construction of RNA-seq libraries. Genome Res 2012, 22:134-141. 10.1101/gr.127373.111, 3246200, 22128135.
-
(2012)
Genome Res
, vol.22
, pp. 134-141
-
-
Gertz, J.1
Varley, K.E.2
Davis, N.S.3
Baas, B.J.4
Goryshin, I.Y.5
Vaidyanathan, R.6
Kuersten, S.7
Myers, R.M.8
-
7
-
-
84874370010
-
Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction
-
3605734, 23311318
-
Lazinski DW, Camilli A. Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction. Biotechniques 2013, 54:25-34. 3605734, 23311318.
-
(2013)
Biotechniques
, vol.54
, pp. 25-34
-
-
Lazinski, D.W.1
Camilli, A.2
-
8
-
-
84871366407
-
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
-
10.1186/gb-2012-13-12-r118, 23259504
-
Didelot X, Eyre D, Cule M, Ip C, Ansari A, Griffiths D, Vaughan A, O'Connor L, Golubchik T, Batty E, et al. Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome Biol 2012, 13:R118. 10.1186/gb-2012-13-12-r118, 23259504.
-
(2012)
Genome Biol
, vol.13
-
-
Didelot, X.1
Eyre, D.2
Cule, M.3
Ip, C.4
Ansari, A.5
Griffiths, D.6
Vaughan, A.7
O'Connor, L.8
Golubchik, T.9
Batty, E.10
-
9
-
-
84855219212
-
Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
-
10.1186/1471-2164-13-1, 3312816, 22214261
-
Oyola S, Otto T, Gu Y, Maslen G, Manske M, Campino S, Turner D, MacInnis B, Kwiatkowski D, Swerdlow H, Quail M. Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes. BMC Genomics 2012, 13:1. 10.1186/1471-2164-13-1, 3312816, 22214261.
-
(2012)
BMC Genomics
, vol.13
, pp. 1
-
-
Oyola, S.1
Otto, T.2
Gu, Y.3
Maslen, G.4
Manske, M.5
Campino, S.6
Turner, D.7
MacInnis, B.8
Kwiatkowski, D.9
Swerdlow, H.10
Quail, M.11
-
10
-
-
84856448155
-
Optimal enzymes for amplifying sequencing libraries
-
Quail MA, Otto TD, Gu Y, Harris SR, Skelly TF, McQuillan JA, Swerdlow HP, Oyola SO. Optimal enzymes for amplifying sequencing libraries. Nat Methods 2012, 9:10-11.
-
(2012)
Nat Methods
, vol.9
, pp. 10-11
-
-
Quail, M.A.1
Otto, T.D.2
Gu, Y.3
Harris, S.R.4
Skelly, T.F.5
McQuillan, J.A.6
Swerdlow, H.P.7
Oyola, S.O.8
-
11
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
10.1186/gb-2011-12-2-r18, 3188800, 21338519
-
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 2011, 12:R18. 10.1186/gb-2011-12-2-r18, 3188800, 21338519.
-
(2011)
Genome Biol
, vol.12
-
-
Aird, D.1
Ross, M.G.2
Chen, W.S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.B.7
Nusbaum, C.8
Gnirke, A.9
-
12
-
-
0032168013
-
Tn5/IS50 target recognition
-
10.1073/pnas.95.18.10716, 27961, 9724770
-
Goryshin IY, Miller JA, Kil YV, Lanzov VA, Reznikoff WS. Tn5/IS50 target recognition. Proc Natl Acad Sci 1998, 95:10716-10721. 10.1073/pnas.95.18.10716, 27961, 9724770.
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 10716-10721
-
-
Goryshin, I.Y.1
Miller, J.A.2
Kil, Y.V.3
Lanzov, V.A.4
Reznikoff, W.S.5
-
13
-
-
0037336665
-
Tn5 as a model for understanding DNA transposition
-
10.1046/j.1365-2958.2003.03382.x, 12603728
-
Reznikoff WS. Tn5 as a model for understanding DNA transposition. Mol Microbiol 2003, 47:1199-1206. 10.1046/j.1365-2958.2003.03382.x, 12603728.
-
(2003)
Mol Microbiol
, vol.47
, pp. 1199-1206
-
-
Reznikoff, W.S.1
-
14
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
10.1101/gr.111120.110, 3106326, 20980556
-
Lunter G, Goodson M. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 2011, 21:936-939. 10.1101/gr.111120.110, 3106326, 20980556.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
15
-
-
84862318037
-
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
-
doi:10.1136/bmjopen-2012-001124
-
Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, et al. A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2012, 2. doi:10.1136/bmjopen-2012-001124.
-
(2012)
BMJ Open
, vol.2
-
-
Eyre, D.W.1
Golubchik, T.2
Gordon, N.C.3
Bowden, R.4
Piazza, P.5
Batty, E.M.6
Ip, C.L.7
Wilson, D.J.8
Didelot, X.9
O'Connor, L.10
-
16
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Subgroup GPDP. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25:2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
Subgroup, G.P.D.P.10
-
17
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
10.1101/gr.074492.107, 2336801, 18349386
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
18
-
-
80053453121
-
Mauve assembly metrics
-
10.1093/bioinformatics/btr451, 3179657, 21810901
-
Darling AE, Tritt A, Eisen JA, Facciotti MT. Mauve assembly metrics. Bioinformatics 2011, 27:2756-2757. 10.1093/bioinformatics/btr451, 3179657, 21810901.
-
(2011)
Bioinformatics
, vol.27
, pp. 2756-2757
-
-
Darling, A.E.1
Tritt, A.2
Eisen, J.A.3
Facciotti, M.T.4
-
19
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
10.1101/gr.107524.110, 2928508, 20644199
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 2010, 20:1297-1303. 10.1101/gr.107524.110, 2928508, 20644199.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
DePristo, M.A.11
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