Differential degradation of intact polar and core glycerol dialkyl glycerol tetraether lipids upon post-depositional oxidation

Organic Geochemistry

Volumn 65, Issue , 2013, Pages 83-93

  Lengger, Sabine K ^a   Kraaij, Mariska ^a   Tjallingii, Rik ^a   Baas, Marianne ^a   Stuut, Jan Berend ^a,b   Hopmans, Ellen C ^a   Sinninghe Damsté, Jaap S ^a   Schouten, Stefan ^a  

^a ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^b UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; DEPOSITION; LIPIDS; OXIDATION; SUBMARINE GEOLOGY;

DIFFERENTIAL DEGRADATION; GEOLOGICAL TIMESCALES; IN-SITU PRODUCTION; LIVING ORGANISMS; ORDERS OF MAGNITUDE; PALEOTEMPERATURES; POLAR HEADGROUPS; TURBIDITE DEPOSITS;

GLYCEROL;

ALCOHOL; DEGRADATION; DEPOSITIONAL ENVIRONMENT; ETHER; ISOPRENE; LIPID; MARINE SEDIMENT; ORGANIC GEOCHEMISTRY; OXIDATION; PALEOTEMPERATURE; PROKARYOTE; SEDIMENT CORE; TURBIDITE;

ATLANTIC OCEAN; MADEIRA ABYSSAL PLAIN;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 84887538785     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2013.10.004     Document Type: Article

References (71)

1. Aitchison J. A new approach to null correlations of proportions. Journal of the International Association for Mathematical Geology 1981, 13:175-189.
2. Albers S.-V., Meyer B.H. The archaeal cell envelope. Nature Reviews Microbiology 2011, 9:414-427.
3. Biddle J.F., Lipp J.S., Lever M.A., Lloyd K.G., Sørensen K.B., Anderson R., Fredricks H.F., Elvert M., Kelly T.J., Schrag D.P., Sogin M.L., Brenchley J.E., Teske A., House C.H., Hinrichs K.-U. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:3846-3851.
4. Bligh E.G., Dyer W.J. A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 1959, 37:911-917.
5. Bloemsma M.R., Zabel M., Stuut J.B.W., Tjallingii R., Collins J.A., Weltje G.J. Modelling the joint variability of grain size and chemical composition in sediments. Sedimentary Geology 2012, 280:135-148.
6. Bouma A.H. Sedimentology of Some Flysch Deposits: A Graphic Approach to Facies Interpretation 1962, Elsevier Pub. Co., Amsterdam, New York.
7. Brochier-Armanet C., Boussau B., Gribaldo S., Forterre P. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nature Reviews Microbiology 2008, 6:245-252.
8. Buckley D.E., Cranston R.E. Early diagenesis in deep sea turbidites: the imprint of paleo-oxidation zones. Geochimica et Cosmochimica Acta 1988, 52:2925-2939.
9. Cowie G., Calvert S., de Lange G., Keil R., Hedges J. Extents and implications of organic matter alteration at oxidation fronts in turbidites from the Madeira Abyssal Plain. Proceedings of the Ocean Drilling Program, Scientific Results Leg 157 1998, 581-589. US Government Printing Office, Washington, DC.
10. Cowie G.L., Hedges J.I., Prahl F.G., de Lange G.J. Elemental and major biochemical changes across an oxidation front in a relict turbidite: An oxygen effect. Geochimica et Cosmochimica Acta 1995, 59:33-46.
11. de la Torre J.R., Walker C.B., Ingalls A.E., Könneke M., Stahl D.A. Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environmental Microbiology 2008, 10:810-818.
12. De Lange G.J. Distribution of exchangeable, fixed, organic and total nitrogen in interbedded turbiditic/pelagic sediments of the Madeira Abyssal Plain, eastern North Atlantic. Marine Geology 1992, 109:95-114.
13. Harvey H.R., Fallon R.D., Patton J.S. The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments. Geochimica et Cosmochimica Acta 1986, 50:795-804.
14. Hoefs M.J.L., Rijpstra W.I.C., Sinninghe Damsté J.S. The influence of oxic degradation on the sedimentary biomarker record I: Evidence from Madeira Abyssal Plain turbidites. Geochimica et Cosmochimica Acta 2002, 66:2719-2735.
15. Hopmans E.C., Weijers J.W.H., Schefuß E., Herfort L., Sinninghe Damsté J.S., Schouten S. A novel proxy for terrestrial organic matter in sediments based on branched and isoprenoid tetraether lipids. Earth and Planetary Science Letters 2004, 224:107-116.
16. Huguet C., Hopmans E.C., Febo-Ayala W., Thompson D.H., Sinninghe Damsté J.S., Schouten S. An improved method to determine the absolute abundance of glycerol dibiphytanyl glycerol tetraether lipids. Organic Geochemistry 2006, 37:1036-1041.
17. Huguet C., de Lange G.J., Gustafsson Ö., Middelburg J.J., Sinninghe Damsté J.S., Schouten S. Selective preservation of soil organic matter in oxidized marine sediments (Madeira Abyssal Plain). Geochimica et Cosmochimica Acta 2008, 72:6061-6068.
18. 86 and BIT organic proxies. Organic Geochemistry 2009, 40:1188-1194.
19. Jenkyns H.C., Schouten-Huibers L., Schouten S., Sinninghe Damsté J.S. Warm Middle Jurassic-Early Cretaceous high-latitude sea-surface temperature from the Southern Ocean. Climate of the Past 2012, 8:215-226.
20. Keil R.G., Montluçon D.B., Prahl F.G., Hedges J.I. Sorptive preservation of labile organic matter in marine-sediments. Nature 1994, 370:549-552.
21. 86 paleothermometer in the ocean. Geochimica et Cosmochimica Acta 2008, 72:1154-1173.
22. 86 and U37K' palaeothermometers. Geochimica et Cosmochimica Acta 2009, 73:2888-2898.
23. Kim J.-H., van der Meer J., Schouten S., Helmke P., Willmott V., Sangiorgi F., Koç N., Hopmans E.C., Sinninghe Damsté J.S. New indices and calibrations derived from the distribution of crenarchaeal isoprenoid tetraether lipids: implications for past sea surface temperature reconstructions. Geochimica et Cosmochimica Acta 2010, 74:4639-4654.
24. Koga Y., Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Bioscience Biotechnology and Biochemistry 2005, 69:2019-2034.
25. Könneke M., Bernhard A.E., de la Torre J.R., Walker C.B., Waterbury J.B., Stahl D.A. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 2005, 437:543-546.
26. Kuypers M.M.M., Blokker P., Erbacher J., Kinkel H., Pancost R.D., Schouten S., Sinninghe Damsté J.S. Massive expansion of marine archaea during a mid-cretaceous oceanic anoxic event. Science 2001, 293:92-94.
27. Lengger S.K., Hopmans E.C., Sinninghe Damsté J.S., Schouten S. Comparison of extraction and work up techniques for analysis of core and intact polar tetraether lipids from sedimentary environments. Organic Geochemistry 2012, 47:34-40.
28. 86. Geochimica et Cosmochimica Acta 2012, 98:244-258.
29. Lin Y.S., Lipp J.S., Elvert M., Holler T., Hinrichs K.-U. Assessing production of the ubiquitous archaeal diglycosyl tetraether lipids in marine subsurface sediment using intramolecular stable isotope probing. Environmental Microbiology 2012.
30. Lipp J.S., Morono Y., Inagaki F., Hinrichs K.-U. Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 2008, 454:991-994.
31. Lipp J.S., Hinrichs K.-U. Structural diversity and fate of intact polar lipids in marine sediments. Geochimica et Cosmochimica Acta 2009, 73:6816-6833.
32. Liu X., Lipp J.S., Hinrichs K.-U. Distribution of intact and core GDGTs in marine sediments. Organic Geochemistry 2011, 42:368-375.
33. Logemann J., Graue J., Köster J., Engelen B., Rullkötter J., Cypionka H. A laboratory experiment of intact polar lipid degradation in sandy sediments. Biogeosciences 2011, 8:2547-2560.
34. McGregor H.V., Dupont l., Stuut J.-B.W., Kuhlmann H. Vegetation change, goats, and religion: a 2000-year history of land use in southern Morocco. Quaternary Science Reviews 2009, 28:1434-1448.
35. Middelburg J.J. A simple rate model for organic matter decomposition in marine sediments. Geochimica et Cosmochimica Acta 1989, 53:1577-1581.
36. Peterse F., Kim J.-H., Schouten S., Klitgaard Kristensen D., Koç N., Sinninghe Damsté J.S. Constraints on the application of the MBT/CBT palaeothermometer at high latitude environments (Svalbard, Norway). Organic Geochemistry 2009, 40:692-699.
37. Peterse F., Hopmans E.C., Schouten S., Mets A., Rijpstra W.I.C., Sinninghe Damsté J.S. Identification and distribution of intact polar branched tetraether lipids in peat and soils. Organic Geochemistry 2011, 42:1007-1015.
38. Peterse F., van der Meer J., Schouten S., Weijers J.W.H., Fierer N., Jackson R.B., Kim J.-H., Sinninghe Damsté J.S. Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochimica et Cosmochimica Acta 2012, 96:215-229.
39. Pitcher A., Hopmans E.C., Schouten S., Sinninghe Damsté J.S. Separation of core and intact polar archaeal tetraether lipids using silica columns: Insights into living and fossil biomass contributions. Organic Geochemistry 2009, 40:12-19.
40. Pitcher A., Rychlik N., Hopmans E.C., Spieck E., Rijpstra W.I.C., Ossebaar J., Schouten S., Wagner M., Sinninghe Damsté J.S. Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic Group I.1b Archaeon. International Society for Microbial Ecology 2010, 4:542-552.
41. Pitcher A., Hopmans E.C., Villanueva L., Reichart G.-J., Schouten S., Sinninghe Damsté J.S. Niche segregation of Ammonia-oxidizing Archaea and Anammox bacteria in the Arabian Sea oxygen minimum zone. ISME Journal 2011, 5:1896-1904.
42. Pitcher A., Hopmans E.C., Mosier A.C., Park S.-J., Rhee S.-K., Francis C.A., Schouten S., Sinninghe Damsté J.S. Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments. Applied and Environmental Microbiology 2011, 77:3468-3477.
43. Prahl F.G., de Lange G.J., Scholten S., Cowie G.L. A case of post-depositional aerobic degradation of terrestrial organic matter in turbidite deposits from the Madeira Abyssal Plain. Organic Geochemistry 1997, 27:141-152.
44. Schouten S., Hopmans E.C., Schefuß E., Sinninghe Damsté J.S. Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?. Earth and Planetary Science Letters 2002, 204:265-274.
45. Schouten S., Hopmans E.C., Sinninghe Damsté J.S. The effect of maturity and depositional redox conditions on archaeal tetraether lipid palaeothermometry. Organic Geochemistry 2004, 35:567-571.
46. 86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Analytical Chemistry 2007, 79:2940-2944.
47. Schouten S., Hopmans E.C., Baas M., Boumann H., Standfest S., Könneke M., Stahl D.A., Sinninghe Damsté J.S. Intact membrane lipids of "Candidatus Nitrosopumilus maritimus", a cultivated representative of the cosmopolitan mesophilic group I crenarchaeota. Applied and Environmental Microbiology 2008, 74:2433-2440.
48. Schouten S., Middelburg J.J., Hopmans E.C., Sinninghe Damsté J.S. Fossilization and degradation of intact polar lipids in deep subsurface sediments: a theoretical approach. Geochimica et Cosmochimica Acta 2010, 74:3806-3814.
49. Schouten S., Hopmans E.C., Sinninghe Damsté J.S. The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review. Organic Geochemistry 2013, 54:19-61.
50. Schubotz F., Wakeham S.G., Lipp J.S., Fredricks H.F., Hinrichs K.-U. Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 2009, 11:2720-2734.
51. Sinninghe Damsté J.S., Rijpstra W.I.C., Reichart G.-J. The influence of oxic degradation on the sedimentary biomarker record II. Evidence from Arabian Sea sediments. Geochimica et Cosmochimica Acta 2002, 66:2737-2754.
52. Sinninghe Damsté J.S., Rijpstra W.I.C., Hopmans E.C., Jung M.Y., Kim J.G., Rhee S.K., Stieglmeier M., Schleper C. Intact polar and core dibiphytanyl glycerol tetraether lipids of group I. 1a and I. 1b Thaumarchaeota in soil. Applied and Environmental Microbiology 2012, 78:6866-6874.
53. Smith R.W., Bianchi T.S., Li X. A re-evaluation of the use of branched GDGTs as terrestrial biomarkers: implications for the BIT Index. Geochimica et Cosmochimica Acta 2012, 80:14-29.
54. Spang A., Hatzenpichler R., Brochier-Armanet C., Rattei T., Tischler P., Spieck E., Streit W., Stahl D.A., Wagner M., Schleper C. Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends in Microbiology 2010, 18:331-340.
55. Sturt H.F., Summons R.E., Smith K., Elvert M., Hinrichs K.-U. Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry - new biomarkers for biogeochemistry and microbial ecology. Rapid Communications in Mass Spectrometry 2004, 18:617-628.
56. Takano Y., Chikaraishi Y., Ogawa N.O., Nomaki H., Morono Y., Inagaki F., Kitazato H., Hinrichs K.-U., Ohkouchi N. Sedimentary membrane lipids recycled by deep-sea benthic archaea. Nature Geoscience 2010, 3:858-861.
57. Tjallingii R., Röhl U., Kölling M., Bickert T. Influence on the water content on X-ray fluorescence core-scanning measurements in soft marine sediments. Geochemistry Geophysics Geosystems 2007, 8:Q02004.
58. Tourna M., Stieglmeier M., Spang A., Könneke M., Schintlmeister A., Urich T., Engel M., Schloter M., Wagner M., Richter A., Schleper C. Nitrosospahera viennensis, an ammonia oxidizing archaeon from soil. Proceedings of the National Academy of Sciences of the United States of America 2011, 108:8420-8425.
59. Walker C.B., de la Torre J.R., Klotz M.G., Urakawa H., Pinel N., Arp D.J., Brochier-Armanet C., Chain P.S.G., Chan P.P., Gollabgir A., Hemp J., Hügler M., Könneke M., Shin M., Lawton T.J., Lowe T., Martens-Habbena W., Sayavedra-Soto L.A., Lang D., Sievert S.M., Rosenzweig A.C., Manning G., Stahl D.A. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:8818-8823.
60. Weaver P.P.E., Kuijpers A. Climatic control of turbidite deposition during the last 200,000 years on the Madeira Abyssal Plain. Nature 1983, 306:360-363.
61. Weaver P.P.E., Buckley D.E., Kuijpers A. Geological investigations of ESOPE cores from the Madeira Abyssal Plain. Geoscience Investigations of Two North Atlantic Abyssal Plains - The ESOPE International Expedition 1989, 535-555. OECD/NEA-Seabed Working group. Commission of European Communities Joint Research Centre, Ispra.
62. Weijers J.W.H., Schouten S., van den Donker J.C., Hopmans E.C., Sinninghe Damsté J.S. Environmental controls on bacterial tetraether membrane lipid distribution in soils. Geochimica et Cosmochimica Acta 2007, 71:703-713.
63. Weijers J.W.H., Panoto E., van Bleijswijk J., Schouten S., Rijpstra W.I.C., Balk M., Stams A.J.M., Sinninghe Damsté J.S. Constraints on the biological source(s) of the orphan branched tetraether membrane lipids. Geomicrobiology Journal 2009, 26:402-414.
64. Weltje G.J., Tjallingii R. Calibration of XRF core scanners for quantitative geochemical logging of sediment cores: theory and application. Earth and Planetary Science Letters 2008, 274:423-438.
65. White D.C., Davis W.M., Nickels J.S., King J.D., Bobbie R.J. Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 1979, 40:51-62.
66. 86 paleothermometry. Paleoceanography 2005, 20:PA3013.
67. 86 paleothermometry. Paleoceanography 2006, 21:PA4208.
68. Wuchter C., Abbas B., Coolen M.J.L., Herfort L., van Bleijswijk J., Timmers P., Strous M., Teira E., Herndl G.J., Middelburg J.J., Schouten S., Sinninghe Damsté J.S. Archaeal nitrification in the ocean. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:12317-12322.
69. Xie S., Lipp J.S., Wegener G., Ferdelman T.G., Hinrichs K.-U. Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations. Proceedings of the National Academy of Sciences of the United States of America 2013, 110:6010-6014.
70. Zell C., Kim J.-H., Moreira-Turcq P., Abril G., Hopmans E.C., Bonnet M.-P., Lima Sobrinho R., Sinninghe Damsté J.S. Disentangling the origins of branched tetraether lipids and crenarchaeol in the lower Amazon River: implications for GDGT-based proxies. Limnology and Oceanography 2013, 58:343-353.
71. Zhu C., Weijers J.W.H., Wagner T., Pan J.-M., Chen J.-F., Pancost R.D. Sources and distributions of tetraetherlipids in surface sediments across a large river-dominated continental margin. Organic Geochemistry 2011, 42:376-386.