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Volumn 5, Issue 12, 2011, Pages 1896-1904

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; CRENARCHAEOL; GLYCEROL ETHER; OXYGEN; QUATERNARY AMMONIUM DERIVATIVE; RIBOSOME DNA; RNA 16S; SEA WATER;

EID: 81855185502     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.60     Document Type: Article
Times cited : (185)

References (58)
  • 1
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • DOI 10.1038/nature04159, PII N04159
    • Arrigo KR. (2005). Marine microorganisms and global nutrient cycles. Nature 437: 349-355. (Pubitemid 41613490)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 349-355
    • Arrigo, K.R.1
  • 3
    • 19744368118 scopus 로고    scopus 로고
    • The nitrogen cycle in the Arabian Sea
    • DOI 10.1016/j.pocean.2005.03.002, PII S0079661105000406
    • Bange HW, Naqvi SWA, Codispoti LA. (2005). The nitrogen cycle in the Arabian Sea. Prog Oceanogr 65: 145-158. (Pubitemid 40743045)
    • (2005) Progress in Oceanography , vol.65 , Issue.2-4 SPEC. ISS. , pp. 145-158
    • Bange, H.W.1    Naqvi, S.W.A.2    Codispoti, L.A.3
  • 4
    • 42049122119 scopus 로고    scopus 로고
    • Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
    • DOI 10.1038/ismej.2007.118, PII ISMEJ2007118
    • Beman JM, Popp BN, Francis CA. (2008). Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J 2: 429-441. (Pubitemid 351518401)
    • (2008) ISME Journal , vol.2 , Issue.4 , pp. 429-441
    • Beman, J.M.1    Popp, B.N.2    Francis, C.A.3
  • 5
    • 33845261493 scopus 로고
    • A rapid method of total lipid extraction and purification
    • Bligh EG, Dyer WJ. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37: 911-917.
    • (1959) Can J Biochem Physiol , vol.37 , pp. 911-917
    • Bligh, E.G.1    Dyer, W.J.2
  • 6
    • 33847752606 scopus 로고    scopus 로고
    • New developments in the marine nitrogen cycle
    • DOI 10.1021/cr050377t
    • Brandes JA, Devol AH, Deutsch C. (2007). New developments in the marine nitrogen cycle. Chem Rev 107: 577-589. (Pubitemid 46381034)
    • (2007) Chemical Reviews , vol.107 , Issue.2 , pp. 577-589
    • Brandes, J.A.1    Devol, A.H.2    Deutsch, C.3
  • 7
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
    • DOI 10.1038/nrmicro1852, PII NRMICRO1852
    • Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P. (2008). Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252. (Pubitemid 351256319)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.3 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 8
    • 77649239037 scopus 로고    scopus 로고
    • Denitrification exceeds anammox as a nitrogen loss pathway in the Arabian Sea oxygen minimum zone
    • Bulow SE, Rich JJ, Naik HS, Pratihary AK, Ward BB. (2010). Denitrification exceeds anammox as a nitrogen loss pathway in the Arabian Sea oxygen minimum zone. Deep-Sea Res I 57: 384-393.
    • (2010) Deep-Sea Res i , vol.57 , pp. 384-393
    • Bulow, S.E.1    Rich, J.J.2    Naik, H.S.3    Pratihary, A.K.4    Ward, B.B.5
  • 10
    • 77953940648 scopus 로고    scopus 로고
    • Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean
    • Church MJ, Wai B, Karl DM, Delong EF. (2010). Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environ Microbiol 12: 679-688.
    • (2010) Environ Microbiol , vol.12 , pp. 679-688
    • Church, M.J.1    Wai, B.2    Karl, D.M.3    Delong, E.F.4
  • 11
    • 4444222910 scopus 로고    scopus 로고
    • Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: Response of methanogens and methanotrophs to environmental change
    • DOI 10.1016/j.orggeochem.2004.06.009, PII S0146638004001573
    • Coolen MJL, Hopmans EC, Rijpstra WIC, Muyzer G, Schouten S, Volkman JK et al. (2004). Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change. Org Geochem 35: 1151-1167. (Pubitemid 39204619)
    • (2004) Organic Geochemistry , vol.35 , Issue.10 , pp. 1151-1167
    • Coolen, M.J.L.1    Hopmans, E.C.2    Rijpstra, W.I.C.3    Muyzer, G.4    Schouten, S.5    Volkman, J.K.6    Sinninghe Damste, J.S.7
  • 12
    • 33947110858 scopus 로고    scopus 로고
    • Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
    • DOI 10.1111/j.1462-2920.2006.01227.x
    • Coolen MJL, Abbas B, van Bleijswijk J, Hopmans EC, Kuypers MMM, Wakeham SG et al. (2007). Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ Microbiol 9: 1001-1016. (Pubitemid 46397097)
    • (2007) Environmental Microbiology , vol.9 , Issue.4 , pp. 1001-1016
    • Coolen, M.J.L.1    Abbas, B.2    Van Bleijswijk, J.3    Hopmans, E.C.4    Kuypers, M.M.M.5    Wakeham, S.G.6    Sinninghe Damste, J.S.7
  • 13
    • 0037431347 scopus 로고    scopus 로고
    • 2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica
    • DOI 10.1038/nature01526
    • Dalsgaard T, Canfield DE, Petersen J, Thamdrup B, Cuna- Gonzalez J. (2003). N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica. Nature 422: 606-608. (Pubitemid 36460411)
    • (2003) Nature , vol.422 , Issue.6932 , pp. 606-608
    • Dalsgaard, T.1    Canfield, D.E.2    Petersen, J.3    Thamdrup, B.4    Acuna-Gonzalez, J.5
  • 14
    • 38549131184 scopus 로고    scopus 로고
    • Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
    • DOI 10.1111/j.1462-2920.2007.01506.x
    • de la Torre JR, Walker CB, Ingalls AE, Konneke M, Stahl DA. (2008). Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810-818. (Pubitemid 351160920)
    • (2008) Environmental Microbiology , vol.10 , Issue.3 , pp. 810-818
    • De La Torre, J.R.1    Walker, C.B.2    Ingalls, A.E.3    Konneke, M.4    Stahl, D.A.5
  • 18
    • 0022554735 scopus 로고
    • The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments
    • Harvey HR, Fallon RD, Patton JS. (1986). The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments. Geochim Cosmochim Acta 50: 795-804.
    • (1986) Geochim Cosmochim Acta , vol.50 , pp. 795-804
    • Harvey, H.R.1    Fallon, R.D.2    Patton, J.S.3
  • 22
    • 34250867885 scopus 로고    scopus 로고
    • The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox
    • Jaeschke A, Hopmans EC, Wakeham SG, Schouten S, Sinninghe Damste JS. (2007). The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnol Oceanogr 52: 780-786. (Pubitemid 46972312)
    • (2007) Limnology and Oceanography , vol.52 , Issue.2 , pp. 780-786
    • Jaeschke, A.1    Hopmans, E.C.2    Wakeham, S.G.3    Schouten, S.4    Damste, J.S.S.5
  • 23
    • 61849183133 scopus 로고    scopus 로고
    • Comparison of ladderane phospholipid and core lipids as indicators for anaerobic ammonium oxidation (anammox) in marine sediments
    • Jaeschke A, Rooks C, Trimmer M, Nicholls JC, Hopmans EC, Schouten S et al. (2009). Comparison of ladderane phospholipid and core lipids as indicators for anaerobic ammonium oxidation (anammox) in marine sediments. Geochim Cosmochim Acta 73: 2077-2088.
    • (2009) Geochim Cosmochim Acta , vol.73 , pp. 2077-2088
    • Jaeschke, A.1    Rooks, C.2    Trimmer, M.3    Nicholls, J.C.4    Hopmans, E.C.5    Schouten, S.6
  • 24
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • DOI 10.1038/35054051
    • Karner MB, DeLong EF, Karl DM. (2001). Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510. (Pubitemid 32144354)
    • (2001) Nature , vol.409 , Issue.6819 , pp. 507-510
    • Karner, M.B.1    Delong, E.F.2    Karl, D.M.3
  • 26
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre
    • Konstantinidis KT, Braff J, Karl DM, DeLong EF. (2009). Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific Subtropical Gyre. Appl Environ Microbiol 75: 5345-5355.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    Delong, E.F.4
  • 32
    • 77249133557 scopus 로고    scopus 로고
    • A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments
    • Li M, Hong YG, Klotz MG, Gu JD. (2010). A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments. Appl Microbiol Biotechnol 86: 781-790.
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 781-790
    • Li, M.1    Hong, Y.G.2    Klotz, M.G.3    Gu, J.D.4
  • 33
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA. (2009). Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    De La Torre, J.R.4    Stahl, D.A.5
  • 34
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • DOI 10.1111/j.1462-2920.2007.01239.x
    • Mincer TJ, Church MJ, Taylor LT, Preston C, Kar DM, Delong EF. (2007). Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 1162-1175. (Pubitemid 46697272)
    • (2007) Environmental Microbiology , vol.9 , Issue.5 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 35
    • 77956256740 scopus 로고    scopus 로고
    • High diversity of ammonia-oxidizing Archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
    • Molina V, Belmar L, Ulloa O. (2010). High diversity of ammonia-oxidizing Archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific. Environ Microbiol 12: 2450-2465.
    • (2010) Environ Microbiol , vol.12 , pp. 2450-2465
    • Molina, V.1    Belmar, L.2    Ulloa, O.3
  • 38
    • 67349131571 scopus 로고    scopus 로고
    • Oxygen minimum zones (OMZs) in the modern ocean
    • Paulmier A, Ruiz-Pino D. (2009). Oxygen minimum zones (OMZs) in the modern ocean. Prog Oceanogr 80: 113-128.
    • (2009) Prog Oceanogr , vol.80 , pp. 113-128
    • Paulmier, A.1    Ruiz-Pino, D.2
  • 39
    • 77950043418 scopus 로고    scopus 로고
    • Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic Group I.1b Archaeon
    • Pitcher A, Rychlik N, Hopmans EC, Spieck E, Rijpstra WI, Ossebaar J et al. (2010). Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic Group I.1b Archaeon. ISME J 4: 542-552.
    • (2010) ISME J , vol.4 , pp. 542-552
    • Pitcher, A.1    Rychlik, N.2    Hopmans, E.C.3    Spieck, E.4    Rijpstra, W.I.5    Ossebaar, J.6
  • 40
    • 79958184764 scopus 로고    scopus 로고
    • Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammoniaoxidizing Archaea enriched from marine and estuarine sediments
    • doi:10.1128/ AEM.02758-10
    • Pitcher A, Hopmans EC, Mosier AC, Park S-J, Rhee S-K, Francis CA et al. (2011). Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammoniaoxidizing Archaea enriched from marine and estuarine sediments. Appl Environ Microbiol, doi:10.1128/ AEM.02758-10.
    • (2011) Appl Environ Microbiol
    • Pitcher, A.1    Hopmans, E.C.2    Mosier, A.C.3    Park, S.-J.4    Rhee, S.-K.5    Francis, C.A.6
  • 41
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of Archaea and Bacteria to aerobic ammonia oxidation in the environment
    • Prosser JI, Nicol GW. (2008). Relative contributions of Archaea and Bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 10: 2931-2941.
    • (2008) Environ Microbiol , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 43
    • 78049432317 scopus 로고    scopus 로고
    • Activity, abundance and diversity of nitrifying Archaea and Bacteria in the central California Current
    • Santoro AE, Casciotti KL, Francis CA. (2010). Activity, abundance and diversity of nitrifying Archaea and Bacteria in the central California Current. Environ Microbiol 12: 1989-2006.
    • (2010) Environ Microbiol , vol.12 , pp. 1989-2006
    • Santoro, A.E.1    Casciotti, K.L.2    Francis, C.A.3
  • 45
    • 77953120516 scopus 로고    scopus 로고
    • Fossilization and degradation of intact polar lipids in deep subsurface sediments: A theoretical approach
    • Schouten S, Middelburg JJ, Hopmans EC, Sinninghe Damste JS. (2010). Fossilization and degradation of intact polar lipids in deep subsurface sediments: a theoretical approach. Geochim Cosmochim Acta 74: 3806-3814.
    • (2010) Geochim Cosmochim Acta , vol.74 , pp. 3806-3814
    • Schouten, S.1    Middelburg, J.J.2    Hopmans, E.C.3    Sinninghe Damste, J.S.4
  • 48
    • 77955273494 scopus 로고    scopus 로고
    • Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
    • Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E et al. (2010). Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol 18: 331-340.
    • (2010) Trends Microbiol , vol.18 , pp. 331-340
    • Spang, A.1    Hatzenpichler, R.2    Brochier-Armanet, C.3    Rattei, T.4    Tischler, P.5    Spieck, E.6
  • 50
    • 0030958373 scopus 로고    scopus 로고
    • Effects of aerobic and microaerobic conditions on anaerobic ammonium- oxidizing (anammox) sludge
    • Strous M, van Gerven E, Kuenen JG, Jetten M. (1997). Effects of aerobic and microaerobic conditions on anaerobic ammonium-oxidizing (Anammox) sludge. Appl Environ Microbiol 63: 2446-2448. (Pubitemid 27232951)
    • (1997) Applied and Environmental Microbiology , vol.63 , Issue.6 , pp. 2446-2448
    • Strous, M.1    Van Gerven, E.2    Kuenen, J.G.3    Jetten, M.4
  • 52
    • 0034779207 scopus 로고    scopus 로고
    • 2O and global climate
    • DOI 10.1029/2000GB001337
    • Suthhof A, Ittekkot V, Gaye-Haake B. (2001). Millennialscale oscillation of denitrification intensity in the Arabian Sea during the late Quaternary and its potential influence on atmospheric N2O and global climate. Global Biogeochem Cy 15: 637-649. (Pubitemid 32949205)
    • (2001) Global Biogeochemical Cycles , vol.15 , Issue.3 , pp. 637-649
    • Suthhof, A.1    Ittekkot, V.2    Gaye-Haake, B.3
  • 53
    • 0034554808 scopus 로고    scopus 로고
    • The role of RNA stability during bacterial stress responses and starvation
    • DOI 10.1046/j.1462-2920.2000.00119.x
    • Takayama K, Kjelleberg S. (2000). The role of RNA stability during bacterial stress responses and starvation. Environ Microbiol 2: 355-365. (Pubitemid 33136696)
    • (2000) Environmental Microbiology , vol.2 , Issue.4 , pp. 355-365
    • Takayama, K.1    Kjelleberg, S.2
  • 54
    • 69949102859 scopus 로고    scopus 로고
    • Nitrogen cycle oceans apart
    • Voss M, Montoya JP. (2009). Nitrogen cycle oceans apart. Nature 461: 49-50.
    • (2009) Nature , vol.461 , pp. 49-50
    • Voss, M.1    Montoya, J.P.2
  • 55
    • 69949108471 scopus 로고    scopus 로고
    • Denitrification as the dominant nitrogen loss process in the Arabian Sea
    • Ward BB, Devol AH, Rich JJ, Chang BX, Bulow SE, Naik H et al. (2009). Denitrification as the dominant nitrogen loss process in the Arabian Sea. Nature 461: 78-81.
    • (2009) Nature , vol.461 , pp. 78-81
    • Ward, B.B.1    Devol, A.H.2    Rich, J.J.3    Chang, B.X.4    Bulow, S.E.5    Naik, H.6
  • 56
    • 33645384503 scopus 로고
    • Determination of the sedimentary microbial biomass by extractable lipid phosphate
    • White DC, Davis WM, Nickels JS, King JD, Bobbie RJ. (1979). Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40: 51-62.
    • (1979) Oecologia , vol.40 , pp. 51-62
    • White, D.C.1    Davis, W.M.2    Nickels, J.S.3    King, J.D.4    Bobbie, R.J.5
  • 57
    • 34547201959 scopus 로고    scopus 로고
    • Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
    • DOI 10.1128/AEM.02774-06
    • Woebken D, Fuchs BM, Kuypers MM, Amann R. (2007). Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl Environ Microbiol 73: 4648-4657. (Pubitemid 47122610)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.14 , pp. 4648-4657
    • Woebken, D.1    Fuchs, B.M.2    Kuypers, M.M.M.3    Amann, R.4


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