Structural diversity and fate of intact polar lipids in marine sediments

Geochimica et Cosmochimica Acta

Volumn 73, Issue 22, 2009, Pages 6816-6833

  Lipp, Julius Sebastian ^a   Hinrichs, Kai Uwe ^a  

^a UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; ENVIRONMENTAL CONDITIONS; MARINE SEDIMENT; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PHOSPHOLIPID; SEDIMENT-WATER INTERFACE;

CASCADIA MARGIN; HYDRATE RIDGE; JUAN DE FUCA RIDGE; PACIFIC OCEAN; PACIFIC OCEAN (EQUATORIAL); PERU; SOUTH AMERICA;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 70349756921     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2009.08.003     Document Type: Article

References (88)

1. Abe, C., Yamamoto, M. and Irino, T. (2006) Data report: organic carbon and biomarker variations, sites 1237 and 1239. Proc. ODP Sci. Res. 202.
2. Aries E., Doumenq P., Artaud J., Molinet J., and Bertrand J.C. Occurrence of fatty acids linked to non-phospholipid compounds in the polar fraction of a marine sedimentary extract from Carteau cove, France. Org. Geochem. 32 (2001) 193-197
3. Arnosti C. Speed bumps and barricades in the carbon cycle: substrate structural effects on carbon cycling. Mar. Chem. 92 (2004) 263-273
4. Arnosti C., and Jørgensen B.B. Organic carbon degradation in arctic marine sediments, Svalbard: a comparison of initial and terminal steps. Geomicrobiol. J. 23 (2006) 551-563
5. Berner R.A. An idealized model of dissolved sulfate distribution in recent sediments. Geochim. Cosmochim. Acta 28 (1964) 1497-1503
6. Biddle J.F., Lipp J.S., Lever M.A., Lloyd k.G., Sørensen K.B., Erson R., Fredricks H.F., Elvert M., Kelly T.J., Schrag D.P., Sogin M.L., Brenchley J.E., Teske A., House C.H., and Hinrichs K.-U. Heterotrophic archaea dominate sedimentary subsurface ecosystems off peru. Proc. Natl. Acad. Sci. USA 103 (2006) 3846-3851
7. Böning P., Brumsack H.-J., Böttcher M.E., Schnetger B., Kriete C., Kallmeyer J., and Borchers S.L. Geochemistry of Peruvian near-surface sediments. Geochim. Cosmochim. Acta 68 (2004) 4429-4451
8. Cardace D., Morris J.D., Peacock A.D., and White D.C. Habitability of subseafloor sediments at the costa rica convergent margin. Proc. ODP Sci. Res. (2006) 205
9. Coolen M.J.L., and Overmann J. Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment. Appl. Environ. Microbiol. 64 (1998) 4513-4521
10. De la Torre J., Walker C.B., Ingalls A.E., Könneke M., and Stahl D.A. Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ. Microbiol. 10 (2008) 810-818
11. De Rosa M., De Rosa S., Gambacorta A., and Bu'lock J.D. Structure of calditol, a new branched-chain nonitol, and of the derived tetraether lipids in thermoacidophile archaebacteria of the caldariella group. Phytochemistry 19 (1980) 249-254
12. De Rosa M., and Gambacorta A. The lipids of archaebacteria. Prog. Lipid Res. 27 (1988) 153-175
13. De Rosa M., Gambacorta A., Huber R., Lanzotti V., Nicolaus B., Stetter K.O., and Trincone A. In: da Costa M.S., Duarte J.C., and Williams R.A.D. (Eds). Microbiology of Extreme Environments and its Potential for Biotechnology (1989), Elsevier Applied Science, London and New york 167-173
14. D'Hondt S.L., Rutherford S., and Spivack A.J. Metabolic activity of subsurface life in deep-sea sediments. Science 295 (2002) 2067-2070
15. D'Hondt, S. L., Jørgensen, B. B., Miller, D. J. and Shipboard Scientific Party (2003) Proc. ODP Init. Repts., vol. 201. Ocean Drilling Program, Texas A & M University, College Station, TX. doi:10.2973/odp.proc.ir.201.2003.
16. Dowhan W. Molecular basis for membrane phospholipid diversity: why are there so many lipids?. Annu. Rev. Biochem. 66 (1997) 199-232
17. Eglinton G., and Hamilton R.J. Leaf epicuticular waxes. Science 156 (1967) 1322-1335
18. Emerson S., and hedges J.I. Processes controlling the organic carbon content of open ocean sediments. Paleooceanography 3 (1988) 621-634
19. Ertefai T.F., Fisher M.C., Fredricks H.F., Lipp J.S., Pearson A., Birgel D., Udert K.M., Cavanaugh C.M., Gschwend P.M., and Hinrichs K.-U. Vertical distribution of microbial lipids and functional genes in chemically distinct layers of a highly polluted meromictic lake. Org. Geochem. 39 (2008) 1572-1588
20. Fang J., and Barcelona M.J. Structural determination and quantitative analysis of bacterial phospholipids using liquid chromatography/electrospray ionization/mass spectrometry. J. Microbiol. Meth. 33 (1998) 23-35
21. Fang J., Barcelona M.J., and Alvarez P.J.J. A direct comparison between fatty acid analysis and intact phospholipid profiling for microbial identification. Org. Geochem. 31 (2000) 881-887
22. Ferrante G., Ekiel I., Patel G.B., and Sprott G.D. A novel core lipid isolated from the aceticlastic methanogens methanothrix concilii gp6. Biochim. Biophys. Acta 963 (1988) 173-182
23. Ferrante G., Richards J.C., and Sprott G.D. Structures of polar lipids from the thermophilic, deep-sea archaeobacterium methanococcus jannaschii. Biochem. Cell Biol. 68 (1990) 274-283
24. Fowler S.W., and knauer G.A. Role of large particles in the transport of elements and organic compounds through the oceanic water column. Prog. Oceanogr. 16 (1986) 147-194
25. Fredricks H.F., and Hinrichs K.-U. Data report: intact membrane lipids as indicators of subsurface life in cretaceous and paleogene sediments from sites 1257 and 1258. Proc. ODP Sci. Res. (2007) 207
26. Gambacorta A., Caracciolo G., Trabasso D., Izzo I., Spinella A., and Sodano G. Biosynthesis of calditol, the cyclopentanoid containing moiety of the membrane lipids of the archaeon sulfolobus solfataricus. Tetrahedron Lett. 43 (2002) 451-453
27. Gliozzi A., Paoli G., De Rosa M., and Gambacorta A. Effect of isoprenoid cyclization on the transition temperature of lipids in thermophilic archaebacteria. Biochim. Biophys. Acta 735 (1983) 234-242
28. Hagio M., Gombos Z., Varkonyi Z., Masamoto K., Sato N., Tsuzuki M., and Wada H. Direct evidence for requirement of phosphatidylglycerol in photosystem ii of photosynthesis. Plant Phys. 124 (2000) 795-804
29. Harvey H.R., Fallon R.D., and Patton J.S. The effect of organic matter and oxygen on the degradation of bacterial membrane lipids in marine sediments. Geochim. Cosmochim. Acta 50 (1986) 795-804
30. Harvey H.R., Tuttle J.H., and Bell J.T. Kinetics of phytoplankton decay during simulated sedimentation: changes in biochemical composition and microbial activity under oxic and anoxic conditions. Geochim. Cosmochim. Acta 59 (1995) 3367-3377
31. Hopmans E.C., Schouten S., Pancost R.D., van der Meer M.T.J., and Sinninghe Damsté J.S. Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry. Rapid Commun. Mass Spectrom. 14 (2000) 585-589
32. Inagaki F., Nanoura T., Nakagawa S., Teske A., Lever M.A., Lauer A., Suzuki M., Takai K., Delwiche M., Colwell F.S., Nealson K.H., Horikoshi K., D'Hondt S., and Jørgensen B.B. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc. Natl. Acad. Sci. USA 103 (2006) 2815-2820
33. Kim J.-H., Schouten S., Hopmans E.C., Donner B., and Sinninghe Damsté J.S. Global sediment core-top calibration of the TEX86 paleothermometer in the ocean. Geochim. Cosmochim. Acta 72 (2008) 1154-1173
34. Koga Y., Nishihara M., Morii H., and Akagawa-matsushita M. Ether polar lipids of methanogenic bacteria: structure, comparative aspects, and biosyntheses. Microbiol. Rev. 57 (1993) 164-182
35. Koga Y., and Nakano M. A dendrogram of archaea based on lipid component parts composition and its relationship to rRNA phylogeny. Syst. Appl. Microbiol. 31 (2008) 169-182
36. In: Kudrass H.R. (Ed). Cruise report so147 peru upwelling: valparaiso - callao, 29.05.-03.07.2000 (2000), BGR Hannover, Germany
37. Langworthy T.A., Holzer G., Zeikus J., and Tornabene T.G. Iso- and anteiso-branched glycerol diethers of the thermophilic anaerobe thermodesulfotobacterium commune. Syst. Appl. Microbiol. 4 (1983) 1-17
38. Lipp J.S., Morono Y., Inagaki F., and Hinrichs K.-U. Significant contribution of archaea to extant biomass in marine subsurface sediments. Nature 454 (2008) 991-994
39. Mallet C.R., Lu Z., and Mazzeo J.R. A study of ion suppression effects in electrospray ionization from mobile phase additives and solid-phase extracts. Rapid Commun. Mass Spectrom. 18 (2004) 49-58
40. Mauclaire L., Zepp K., Meister P., and Mckenzie J. Direct in situ detection of cells in deep-sea sediment cores from the Peru Margin (ODP Leg 201, Site 1229). Geobiology 2 (2004) 217-223
41. Middelburg J.J. A simple rate model for organic matter decomposition in marine sediments. Geochim. Cosmochim. Acta 53 (1989) 1577-1581
42. Mills C.T., Dias R.F., Graham D., and Mandernack K.W. Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179. Mar. Chem. 98 (2006) 197-209
43. Parkes R.J., Cragg B.A., Bale S.J., Getliff J.M., Goodman K., Rochelle P.A., Fry J.C., Weightman A.J., and Harvey S.M. Deep bacterial biosphere in Pacific Ocean sediments. Nature 371 (1994) 410-413
44. Parkes R.J., Cragg B.A., and Wellsbury P. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol. J. 8 (2000) 11-28
45. Parkes R.J., Webster G., Cragg B.A., Weightman A.J., Newberry C.J., Ferdelman T.G., Kallmeyer J., Jørgensen B.B., Aiello I.W., and Fry J.C. Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature 436 (2005) 390-394
46. Pearson A., Huang Z., Ingalls A.E., Romanek C.S., Wiegel J., Freeman K.H., Smittenberg R.H., and Zhang C.L. Nonmarine crenarchaeol in nevada hot springs. Appl. Environ . Microbiol. 70 (2004) 5229-5237
47. Pearson A. Who lives in the sea floor?. Nature 454 (2008) 952-953
48. Prahl F.G., Mix A.C., and Sparrow M.A. Alkenone paleothermometry: biological lessons from marine sediment records off western South America. Geochim. Cosmochim. Acta 70 (2006) 101-117
49. Raetz C.R.H. Molecular genetics of membrane phospholipid synthesis. Annu. Rev. Genet. 20 (1986) 253-291 10.1146/annurev.ge.20.120186.001345
50. Rossel P.E., Lipp J.S., Fredricks H.F., Arnds J., Boetius A., Elvert M., and Hinrichs K.-U. Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria. Org. Geochem. 39 (2008) 992-999
51. Rütters H., Sass H., Cypionka H., and Rullkötter J. Monoalkylether phospholipids in the sulfate-reducing bacteria desulfosarcina variabilis and desulforhabdus amnigenus. Arch. Microbiol. 176 (2001) 435-442
52. Rütters H., Sass H., Cypionka H., and Rullkötter J. Phospholipid analysis as a tool to study complex microbial communities in marine sediments. J. Microbiol. Meth. 48 (2002) 149-160
53. Rütters H., Sass H., Cypionka H., and Rullkötter J. Microbial communities in a wadden sea sediment core - clues from analyses of intact glyceride lipids, and released fatty acids. Org. Geochem. 33 (2002) 803-816
54. Sakurai I., Hagio M., Gombos Z., Tyystjärvi T., Paakkarinen V., Aro E.-M., and Wada H. Requirement of phosphatidylglycerol for maintenance of photosynthetic machinery. Plant Physiol. 133 (2003) 1376-1384
55. Schippers A., Neretin L.N., Kallmeyer J., Ferdelman T.G., Cragg B.A., Parkes R.J., and Jørgensen B.B. Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature 433 (2005) 861-864
56. Schippers, A., Neretin, L. N. (2006) Quantification of microbial communities in near-surface and deeply buried marine sediments on the peru continental margin using real-time pcr. Environ. Microbiol.. doi:10.1111/j.1462-2920.2006.01019.x.
57. Schouten S., Hopmans E.C., Pancost R.D., and Sinninghe damsté J.S. Widespread occurrence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles. Proc. Natl. Acad. Sci. USA 97 (2000) 14421-14426
58. Schouten S., Hopmans E.C., Schefuß E., and Sinninghe Damsté J.S. Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?. Earth Planet. Sci. Lett. 204 (2002) 265-274
59. Schouten S., Hopmans E.C., Baas M., Boumann H., Standfest S., Könneke M., Stahl D.A., and Sinninghe Damsté J.S. Intact membrane lipids of "Candidatus Nitrosopumilus maritimus", a cultivated representative of the cosmopolitan mesophilic group I crenarchaeota. Appl. Environ. Microbiol. 74 (2008) 2433-2440
60. Schubotz, F. (2005) Investigation of intact polar lipids of bacteria isolated from the deep marine subsurface. Msc thesis, University of Bremen, Germany.
61. Schubotz F., Wakeham S.G., Fredricks H.F., Lipp J.S., and Hinrichs K.-U. Detection of microbial biomass by intact membrane lipid analysis in the water column and surface sediments of the black sea. Environ. Microbiol. (2009) 10.1111/j.1462-2920.2009.01999.x
62. Shah S.R., Mollenhauer G., Ohkouchi N., Eglinton T.I., and Pearson A. Origins of archaeal tetraether lipids in marine sediments: insights from radiocarbon analysis. Geochim. Cosmochim. Acta 72 (2008) 4577-4594
63. Shipboard Scientific Party (2004) Juan de fuca hydrogeology: the hydrogeologic architecture of basaltic oceanic crust: compartmentalization, anisotropy, microbiology, and crustal-scale properties on the eastern flank of juan de fuca ridge, eastern pacific ocean. IODP Prelim. Rept., 301. doi:10.2204/iodp.pr.301.2004.
64. Sinninghe Damsté J.S., Rijpstra W.I.C., Hopmans E.C., Prahl F.G., Wakeham S., and Schouten S. Distribution of membrane lipids of planktonic crenarchaeota in the Arabian sea. Appl. Environ. Microbiol. 68 (2002) 2997-3002
65. Sinninghe Damsté J.S., Schouten S., Hopmans E.C., van Duin A.C.T., and Geenevasen J.A.J. Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J. Lipid Res. 43 (2002) 1641-1651
66. Sørensen K.B., and Teske A. Stratified communities of active archaea in deep marine subsurface sediments. Appl. Environ. Microbiol. 72 (2006) 4596-4603
67. Sohlenkamp C., López-lara I.M., and Geiger O. Biosynthesis of phosphatidylcholine in bacteria. Prog. Lipid Res. 42 (2003) 115-162
68. Strapoc D., Picardal F.W., Turich C., Schaperdoth I., Macalady J.L., Lipp J.S., Lin Y.-S., Ertefai T.F., Schubotz F., Hinrichs K.-U., Mastalerz M., and Schimmelmann A. Methane-producing microbial community in a coal bed of the Illinois basin. Appl. Environ. Microbiol. 74 (2008) 2424-2432
69. Sturt H.F., Summons R.E., Smith K., Elvert M., and Hinrichs K.-U. Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry - new biomarkers for biogeochemistry and microbial ecology. Rapid Commun. Mass Spectrom. 18 (2004) 617-628
70. Summit M., Peacock A., Ringelberg D., White D.C., and Baross J.A. Phospholipid fatty acid-derived microbial biomass and community dynamics in hot, hydrothermally influenced sediments from the middle valley, juan de fuca ridge. Proc. ODP Sci. Res. (2000) 169
71. 13C-labeled lipid tracers and their degradation products in microcosm studies. Org. Geochem. 31 (2000) 199-209
72. Teske A., and Sørensen K.B. Uncultured archaea in deep marine subsurface sediments: have we caught them all?. The ISME J. 2 (2008) 3-18
73. Thiel V., Heim C., Arp G., Hahmann U., Sjövall P., and Lausmaa J. Biomarkers at the microscopic range: tof-sims molecular imaging of archaea-derived lipids in a microbial mat. Geobiology 5 (2007) 413-421
74. Tréhu, A. M., Bohrmann, G., Rack, F. R., Torres, M. E. and Shipboard Scientific Party (2003) Proc. ODP Init. Repts. (Ocean Drilling Program, Texas A & M University, College Station, TX) vol. 204. doi:10.2973/odp.proc.ir.204.2003.
75. Uda I., Sugai A., Itoh Y.H., and Itoh T. Variation of molecular species of polar lipids from thermoplasma acidophilum depends on growth temperature. Lipids 36 (2001) 103-105
76. Valentine D.L. Adaptations to energy stress dictate the ecology and evolution of the archaea. Nat. Rev. Microbiol. 5 (2007) 316-323
77. Volkman J.K., and Johns R.B. The geochemical significance of positional isomers of unsaturated acids from an intertidal sediment. Nature 267 (1977) 693-694
78. Wada H., and Murata N. The essential role of phosphatidylglycerol in photosynthesis. Photosynth. Res. 92 (2007) 205-215 10.1007/s11120-007-9203-
79. Wara M.W., and Ravelo A.C. Data report: mg/ca, sr/ca, mn/ca, and oxygen and carbon isotope records of pliocene-pleistocene foraminifers from ODP Leg 202, Site 1237. Proc. ODP Sci. Res. (2006) 202
80. Westrich J.T., and Berner R.A. The role of sedimentary organic matter in bacterial sulfate reduction: the g-model tested. Limnol. Oceanogr. 29 (1984) 236-249
81. White, D. C., Bobbie, R. J., King, J. D., Nickels, J. S. and Amoe, P. (1979a) In Methodology for biomass determination and microbial activities in sediments (eds. C. D. Lichtfeld, P. L. Seyfried) (pp. 87-103). ASTM STP 673, Philadelphia.
82. White D.C., Davis W.M., Nickels J.S., King J.D., and Bobbie R.J. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40 (1979) 51-62
83. White D.C., and Ringelberg D.B. In: Burlage B.S., Atlas R., and Stahl D. (Eds). Techniques in Microbial Ecology (1998), Oxford University Press, New York 255-259
84. Whitman W.B., Coleman D.C., and Wiebe W.J. Prokaryotes: the unseen majority. Proc. Natl. Acad. Sci. USA 95 (1998) 6578-6583
85. Whitman, W. B., Boone, D. R., Koga, Y. and Keswani, J. (2001) Taxonomy of methanogenic archaea. In Bergey's Manual of Systematic Bacteriology (eds. Garrity, G. M. Boone, D. R., Castenholz, R.W.) second ed., vol. 1, the archaea and the deeply branching and phototrophic bacteria.) (pp. 211-213). Springer-Verlag, New York.
86. Wuchter C., Schouten S., Wakeham S., and Sinninghe Damsté J.S. Temporal and spatial variation in tetraether membrane lipids of marine crenarchaeota in particulate organic matter: implications for TEX86 paleothermometry. Paleooceanography 20 (2005) 10.1029/2004pa001110
87. Wuchter C., Schouten S., Wakeham S., and Sinninghe Damsté J.S. Archaeal tetraether membrane lipid fluxes in the northeastern pacific and the arabian sea: implications for TEX86 paleothermometry. Paleooceanography 21 (2006) 10.1029/2006pa001279
88. Zhang C.L., Pearson A., Li Y.-l., Mills G., and Wiegel J. Thermophilic temperature optimum for crenarchaeol synthesis and its implication for archaeal evolution. Appl. Environ. Microbiol. 72 (2006) 4419-4422