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Volumn 22, Issue 11, 2013, Pages 5303-5313

Field- and Gaussian-based 3D-QSAR studies on barbiturate analogs as MMP-9 inhibitors

Author keywords

3D QSAR; Gelatinases; N Substituted homopiperazine barbiturate derivatives; Quantum polarized ligand docking

Indexed keywords

ANTINEOPLASTIC AGENT; BARBITURIC ACID DERIVATIVE; GELATINASE B; GELATINASE INHIBITOR;

EID: 84887476260     PISSN: 10542523     EISSN: 15548120     Source Type: Journal    
DOI: 10.1007/s00044-013-0479-6     Document Type: Article
Times cited : (19)

References (34)
  • 1
    • 30344474006 scopus 로고    scopus 로고
    • 3D-QSAR studies on antitubercular thymidine monophosphate kinase inhibitors based on different alignment methods
    • 16290929 10.1016/j.bmcl.2005.10.086 1:CAS:528:DC%2BD28Xhs1Crug%3D%3D
    • Aparna V, Jeevan J, Ravi M, Desiraju GR, Gopalakrishnan B (2006) 3D-QSAR studies on antitubercular thymidine monophosphate kinase inhibitors based on different alignment methods. Bioorg Med Chem Lett 16:1014-1020
    • (2006) Bioorg Med Chem Lett , vol.16 , pp. 1014-1020
    • Aparna, V.1    Jeevan, J.2    Ravi, M.3    Desiraju, G.R.4    Gopalakrishnan, B.5
  • 2
    • 61849185822 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship studies on c-Src inhibitors based on different docking methods
    • 19291104 10.1111/j.1747-0285.2009.00789.x 1:CAS:528:DC%2BD1MXktVWhsro%3D
    • Bairy SK, Suneel Kumar BV, Bhalla JU, Pramod AB, Ravikumar M (2009) Three-dimensional quantitative structure-activity relationship studies on c-Src inhibitors based on different docking methods. Chem Biol Drug Des 73:416-427
    • (2009) Chem Biol Drug des , vol.73 , pp. 416-427
    • Bairy, S.K.1    Suneel Kumar, B.V.2    Bhalla, J.U.3    Pramod, A.B.4    Ravikumar, M.5
  • 3
    • 0030806173 scopus 로고    scopus 로고
    • Changing views of the role of matrix metalloproteinases in metastasis
    • 9293916 10.1093/jnci/89.17.1260 1:CAS:528:DyaK2sXmt1Squ7g%3D
    • Chambers AF, Matrisian LM (1997) Changing views of the role of matrix metalloproteinases in metastasis. J Natl Cancer Inst 89:1260-1270
    • (1997) J Natl Cancer Inst , vol.89 , pp. 1260-1270
    • Chambers, A.F.1    Matrisian, L.M.2
  • 4
    • 20344403522 scopus 로고    scopus 로고
    • Importance of accurate charges in molecular docking: Quantum mechanical/molecular mechanical (QM/MM) approach
    • 15841474 10.1002/jcc.20222 1:CAS:528:DC%2BD2MXkvF2ktLo%3D
    • Cho AE, Guallar V, Berne B, Friesner RA (2005) Importance of accurate charges in molecular docking: quantum mechanical/molecular mechanical (QM/MM) approach. J Comput Chem 26:915-931
    • (2005) J Comput Chem , vol.26 , pp. 915-931
    • Cho, A.E.1    Guallar, V.2    Berne, B.3    Friesner, R.A.4
  • 5
    • 52949136266 scopus 로고    scopus 로고
    • Specific targeting of metzincin family members with small-molecule inhibitors: Progress toward a multifarious challenge
    • 18790648 10.1016/j.bmc.2008.08.058 1:CAS:528:DC%2BD1cXhtFylsLfN
    • Georgiadis D, Yiotakis A (2008) Specific targeting of metzincin family members with small-molecule inhibitors: progress toward a multifarious challenge. Bioorg Med Chem 16:8781-8794
    • (2008) Bioorg Med Chem , vol.16 , pp. 8781-8794
    • Georgiadis, D.1    Yiotakis, A.2
  • 6
    • 0036165030 scopus 로고    scopus 로고
    • Gelatinases and their inhibitors in tumor metastasis: From biological research to medical applications
    • 11813883 1:CAS:528:DC%2BD38XitVKkt74%3D
    • Giannelli G, Antonaci S (2002) Gelatinases and their inhibitors in tumor metastasis: from biological research to medical applications. Histol Histopathol 17:339-345
    • (2002) Histol Histopathol , vol.17 , pp. 339-345
    • Giannelli, G.1    Antonaci, S.2
  • 7
    • 33744797077 scopus 로고    scopus 로고
    • MMP-9 is differentially expressed in primary human colorectal adenocarcinomas and their metastases
    • 16687484 10.1158/1541-7786.MCR-06-0003 1:CAS:528:DC%2BD28XktlymsLg%3D
    • Illemann M, Bird N, Majeed A, Sehested M, Laerum OD, Lund LR, Dano K, Nielsen BS (2006) MMP-9 is differentially expressed in primary human colorectal adenocarcinomas and their metastases. Mol Cancer Res 4:293-302
    • (2006) Mol Cancer Res , vol.4 , pp. 293-302
    • Illemann, M.1    Bird, N.2    Majeed, A.3    Sehested, M.4    Laerum, O.D.5    Lund, L.R.6    Dano, K.7    Nielsen, B.S.8
  • 8
    • 34248596450 scopus 로고    scopus 로고
    • Computational protocol for predicting the binding affinities of zinc containing metalloprotein-ligand complexes
    • 17380508 10.1002/prot.21332 1:CAS:528:DC%2BD2sXlsFSjs7Y%3D
    • Jain T, Jayaram B (2007) Computational protocol for predicting the binding affinities of zinc containing metalloprotein-ligand complexes. Proteins 67:1167-1178
    • (2007) Proteins , vol.67 , pp. 1167-1178
    • Jain, T.1    Jayaram, B.2
  • 9
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetic and properties of organic liquids
    • 10.1021/ja9621760 1:CAS:528:DyaK28XmtlOitrs%3D
    • Jorgensen WL, Maxwell DS, Tirado-Rives J (1996) Development and testing of the OPLS all-atom force field on conformational energetic and properties of organic liquids. J Am Chem Soc 118:11225-11235
    • (1996) J Am Chem Soc , vol.118 , pp. 11225-11235
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 11
    • 79960226262 scopus 로고    scopus 로고
    • Physiology and pathophysiology of matrix metalloproteases
    • 20640864 10.1007/s00726-010-0689-x 1:CAS:528:DC%2BC3MXmsFGgsL0%3D
    • Klein T, Bischoff R (2011) Physiology and pathophysiology of matrix metalloproteases. Amino Acids 41:271-290
    • (2011) Amino Acids , vol.41 , pp. 271-290
    • Klein, T.1    Bischoff, R.2
  • 12
    • 77958126601 scopus 로고    scopus 로고
    • Recent advances in fragment-based QSAR and multi-dimensional QSAR methods
    • 10.3390/ijms11103846
    • Kyaw ZM, Xiang-Qun X (2010) Recent advances in fragment-based QSAR and multi-dimensional QSAR methods. Int J Mol Sci 11:3846-3866
    • (2010) Int J Mol Sci , vol.11 , pp. 3846-3866
    • Kyaw, Z.M.1    Xiang-Qun, X.2
  • 13
    • 5444223697 scopus 로고    scopus 로고
    • Personal experience with four kinds of chemical structure drawing software: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch
    • 15446849 10.1021/ci049794h 1:CAS:528:DC%2BD2cXmtlChurs%3D
    • Li Z, Wan H, Shi Y, Ouyang P (2004) Personal experience with four kinds of chemical structure drawing software: review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch. J Chem Inf Comput Sci 44:1886-1890
    • (2004) J Chem Inf Comput Sci , vol.44 , pp. 1886-1890
    • Li, Z.1    Wan, H.2    Shi, Y.3    Ouyang, P.4
  • 14
    • 77953191275 scopus 로고    scopus 로고
    • Increased expression of MMP9 is correlated with poor prognosis of nasopharyngeal carcinoma
    • 20534121 10.1186/1471-2407-10-270
    • Liu Z, Li L, Yang Z, Luo W, Li X, Yang H, Yao K, Wu B, Fang W (2010) Increased expression of MMP9 is correlated with poor prognosis of nasopharyngeal carcinoma. BMC Cancer 10:270
    • (2010) BMC Cancer , vol.10 , pp. 270
    • Liu, Z.1    Li, L.2    Yang, Z.3    Luo, W.4    Li, X.5    Yang, H.6    Yao, K.7    Wu, B.8    Fang, W.9
  • 15
    • 79960153872 scopus 로고    scopus 로고
    • Biological role of matrix metalloproteinases: Critical balance
    • 21177845 10.1183/09031936.00146510 1:STN:280:DC%2BC3MnksF2ntw%3D%3D
    • Loffek S, Schilling O, Franzke CW (2011) Biological role of matrix metalloproteinases: critical balance. Eur Respir J 38:191-208
    • (2011) Eur Respir J , vol.38 , pp. 191-208
    • Loffek, S.1    Schilling, O.2    Franzke, C.W.3
  • 16
    • 41749100830 scopus 로고    scopus 로고
    • Metastatic cancer cell
    • Marina B, Ivan S (2007) Metastatic cancer cell. Annu Rev Pathol 3:221-247
    • (2007) Annu Rev Pathol , vol.3 , pp. 221-247
    • Marina, B.1    Ivan, S.2
  • 18
    • 77950916156 scopus 로고    scopus 로고
    • Development of predictive pharmacophore model for insilico screening, 3D QSAR COMFA and COMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors
    • 20179991 10.1007/s10822-010-9322-z 1:CAS:528:DC%2BC3cXjt1Cjtr0%3D
    • Murumkar PR, Zambre VP, Yadav MR (2010) Development of predictive pharmacophore model for insilico screening, 3D QSAR COMFA and COMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors. J Comput Aided Mol Des 24:143-156
    • (2010) J Comput Aided Mol des , vol.24 , pp. 143-156
    • Murumkar, P.R.1    Zambre, V.P.2    Yadav, M.R.3
  • 19
    • 53749084902 scopus 로고    scopus 로고
    • Insight into the structural requirements of proton pump inhibitors based on CoMFA and CoMSIA
    • 18676164 10.1016/j.jmgm.2008.04.012 1:CAS:528:DC%2BD1cXht1KnsLzJ
    • Nayana MR, Sekhar YN, Nandyala H, Muttineni R, Bairy SK, Singh K, Mahmood SK (2008) Insight into the structural requirements of proton pump inhibitors based on CoMFA and CoMSIA. J Mol Graph Model 27:233-243
    • (2008) J Mol Graph Model , vol.27 , pp. 233-243
    • Nayana, M.R.1    Sekhar, Y.N.2    Nandyala, H.3    Muttineni, R.4    Bairy, S.K.5    Singh, K.6    Mahmood, S.K.7
  • 21
    • 67650717853 scopus 로고    scopus 로고
    • Discovery of geranylgeranyltransferase-I inhibitors with novel scaffolds by the means of quantitative structure-activity relationship modeling. Virtual screening and experimental validation
    • 19537691 10.1021/jm8013772 1:CAS:528:DC%2BD1MXnsVWnsrs%3D
    • Peterson YK, Wang XS, Casey PJ, Tropsha A (2009) Discovery of geranylgeranyltransferase-I inhibitors with novel scaffolds by the means of quantitative structure-activity relationship modeling. Virtual screening and experimental validation. J Med Chem 52:4210-4220
    • (2009) J Med Chem , vol.52 , pp. 4210-4220
    • Peterson, Y.K.1    Wang, X.S.2    Casey, P.J.3    Tropsha, A.4
  • 22
    • 14044274265 scopus 로고    scopus 로고
    • Recent developments in the design of specific matrix metalloproteinase inhibitors aided by structural and computational studies
    • 15723627 10.2174/1381612053382115 1:CAS:528:DC%2BD2MXhsVKnsrw%3D
    • Rao BG (2005) Recent developments in the design of specific matrix metalloproteinase inhibitors aided by structural and computational studies. Curr Pharm Des 11:295-322
    • (2005) Curr Pharm des , vol.11 , pp. 295-322
    • Rao, B.G.1
  • 23
    • 78449235037 scopus 로고    scopus 로고
    • Matrix metalloproteinase-9 (MMP9) - A mediating enzyme in cardiovascular disease, cancer, and neuropsychiatric disorders
    • Rybakowski JK (2009) Matrix metalloproteinase-9 (MMP9) - a mediating enzyme in cardiovascular disease, cancer, and neuropsychiatric disorders. Cardivasc Psychiatry Neurol 2009:904836
    • (2009) Cardivasc Psychiatry Neurol , vol.2009 , pp. 904836
    • Rybakowski, J.K.1
  • 24
    • 62649162728 scopus 로고    scopus 로고
    • Functional polymorphism of the matrix metalloproteinase-9 (MMP-9) gene in schizophrenia
    • 19264454 10.1016/j.schres.2009.02.005
    • Rybakowski JK, Skibinska M, Kapelski P, Kaczmarek L, Hauser J (2009) Functional polymorphism of the matrix metalloproteinase-9 (MMP-9) gene in schizophrenia. Schizophr Res 109:90-93
    • (2009) Schizophr Res , vol.109 , pp. 90-93
    • Rybakowski, J.K.1    Skibinska, M.2    Kapelski, P.3    Kaczmarek, L.4    Hauser, J.5
  • 25
    • 84855662356 scopus 로고    scopus 로고
    • Biological evaluation and docking studies of recently identified inhibitors of phosphoinositide-3-kinases
    • 22212721 10.1016/j.bmcl.2011.12.044 1:CAS:528:DC%2BC38XpsFeitg%3D%3D
    • Sabbah DA, Simms NA, Brattain MG, Vennerstrom JL, Zhong H (2012) Biological evaluation and docking studies of recently identified inhibitors of phosphoinositide-3-kinases. Bioorg Med Chem Lett 22:876-880
    • (2012) Bioorg Med Chem Lett , vol.22 , pp. 876-880
    • Sabbah, D.A.1    Simms, N.A.2    Brattain, M.G.3    Vennerstrom, J.L.4    Zhong, H.5
  • 26
    • 0034892043 scopus 로고    scopus 로고
    • Increased expression of matrix metalloproteinases MMP-2, MMP-9, and the urokinase-type plasminogen activator is associated with progression from benign to advanced ovarian cancer
    • 11489818 1:CAS:528:DC%2BD3MXmsVOmtL8%3D
    • Schmalfeldt B, Prechtel D, Härting K, Späthe K, Rutke S, Konik E, Fridman R, Berger U, Schmitt M, Kuhn W, Lengyel E (2001) Increased expression of matrix metalloproteinases MMP-2, MMP-9, and the urokinase-type plasminogen activator is associated with progression from benign to advanced ovarian cancer. Clin Cancer Res 7:2396-2404
    • (2001) Clin Cancer Res , vol.7 , pp. 2396-2404
    • Schmalfeldt, B.1    Prechtel, D.2    Härting, K.3    Späthe, K.4    Rutke, S.5    Konik, E.6    Fridman, R.7    Berger, U.8    Schmitt, M.9    Kuhn, W.10    Lengyel, E.11
  • 27
    • 0036209979 scopus 로고    scopus 로고
    • MMP-2 and MMP-9 expression in breast cancer-derived human fibroblasts is differentially regulated by stromal-epithelial interactions
    • 12000221 10.1023/A:1014918512569 1:CAS:528:DC%2BD38XjsFWitLY%3D
    • Singer CF, Kronsteiner N, Marton E, Kubista M, Cullen KJ, Hirtenlehner K, Seifert M, Kubista E (2002) MMP-2 and MMP-9 expression in breast cancer-derived human fibroblasts is differentially regulated by stromal-epithelial interactions. Breast Cancer Res Treat 72:69-77
    • (2002) Breast Cancer Res Treat , vol.72 , pp. 69-77
    • Singer, C.F.1    Kronsteiner, N.2    Marton, E.3    Kubista, M.4    Cullen, K.J.5    Hirtenlehner, K.6    Seifert, M.7    Kubista, E.8
  • 29
    • 82255184361 scopus 로고    scopus 로고
    • Structural insights into the binding of MMP9 inhibitors
    • 21383916 10.6026/97320630005310
    • Tandon A, Sinha S (2011) Structural insights into the binding of MMP9 inhibitors. Bioinformation 5:310-314
    • (2011) Bioinformation , vol.5 , pp. 310-314
    • Tandon, A.1    Sinha, S.2
  • 31
    • 77949342214 scopus 로고    scopus 로고
    • 3D-QSAR in drug design - A review
    • 19929826 10.2174/156802610790232260 1:CAS:528:DC%2BC3cXjtFWqu7c%3D
    • Verma J, Khedkar VM, Coutinho EC (2010) 3D-QSAR in drug design - a review. Curr Top Med Chem 10:95-115
    • (2010) Curr Top Med Chem , vol.10 , pp. 95-115
    • Verma, J.1    Khedkar, V.M.2    Coutinho, E.C.3
  • 32
    • 79961173981 scopus 로고    scopus 로고
    • N-Substituted homopiperazine barbiturates as gelatinase inhibitors
    • 21764590 10.1016/j.bmc.2011.06.055 1:CAS:528:DC%2BC3MXpvFWhsLc%3D
    • Wang J, Medina C, Radomski MW, Gilmer JF (2011) N-Substituted homopiperazine barbiturates as gelatinase inhibitors. Bioorg Med Chem 19:4985-4999
    • (2011) Bioorg Med Chem , vol.19 , pp. 4985-4999
    • Wang, J.1    Medina, C.2    Radomski, M.W.3    Gilmer, J.F.4
  • 33
    • 0028225902 scopus 로고
    • Angiogenesis and colonization in the tumor metastatic process: Basic and applied advances
    • Weinstat SD, Steeg PS (1994) Angiogenesis and colonization in the tumor metastatic process: basic and applied advances. FASEB J 8:401-407
    • (1994) FASEB J , vol.8 , pp. 401-407
    • Weinstat, S.D.1    Steeg, P.S.2


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