Molecular study of arbuscular mycorrhizal fungi colonizing the sporophyte of the eusporangiate rattlesnake fern (Botrychium virginianum, Ophioglossaceae)

Mycorrhiza

Volumn 17, Issue 7, 2007, Pages 597-605

  Kovács, Gábor M ^a   Balázs, Tímea ^a   Pénzes, Zsolt ^b,c  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c UNIVERSITY OF SZEGED   (Hungary)

Author keywords

Arbuscular mycorrhiza; Fern; Molecular diversity; Polymerase chain reaction; Primers

Indexed keywords

ARBUSCULAR MYCORRHIZA; COLONIZATION; DATA SET; FERN; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; SPOROPHYTE;

ARTICLE; CLASSIFICATION; FERN; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MYCORRHIZA; PHYLOGENY; PLANT ROOT;

FERNS; MYCORRHIZAE; PHYLOGENY; PLANT ROOTS;

ARBUSCULAR; BOTRYCHIUM VIRGINIANUM; FILICOPHYTA; FUNGI; GIGASPORACEAE; GLOMUS; OPHIOGLOSSACEAE; SCUTELLOSPORA; SCUTELLOSPORA GREGARIA;

EID: 34848907431     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-007-0137-2     Document Type: Article

References (60)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Bagi I (2006) Population structure and dynamics of rattlesnake fern (Botrychium virginianum (L.) Sw.) in Kunfehértó. Conference on the Actual Flora and Vegetation in the Carpathian Basin VII. Debrecen, Abstracts, p 6
3. Brundrett MC (2002) Coevolution of roots and mycorrhizas of land plants. New Phytol 154:275-304
4. Burgeff H (1938) Mycorrhiza. In: Verdoorn F (ed) Manual of pteridology. Nijhoff, The Hague, pp 159-196
5. Camacho FJ, Trappe JM (1998) DNA examination of the root fungal community of pumice grape fern, Botrychium pumicola. 2nd ICOM, Abstracts, Uppsala, p 38
6. Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmidt TM, Garrity GM, Tiedje JM (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31:442-443
7. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16:10881-10890
8. Csiky J (1997) A Botrychium virginianum (L.) Sw. Fitocönoló giai és ökológiai vizsgálata a kunfehé rtói holdrutás erdoben. Kitaibelia 2:56-68
9. Douhan GW, Petersen C, Bledsoe CS, Rizzo DM (2005) Contrasting root associated fungi of three common oak-woodland plant species based on molecular identification: host specificity or non-specific application. Mycorrhiza 15:365-372
10. Filatov DA (2002) ProSeq: a software for preparation and evolutionary analysis of DNA sequence data sets. Mol Ecol Notes 2:621-624
11. Gallaud I (1905) Études sur les mycorrhizes endotrophes. Rev Gen Bot 17:5-48,66-83,123-136,223-239,313-325,425-433,479-500
12. Gamper H, Leuchtmann A (2007) Taxon-specific PCR primers to detect two inconspicuous arbuscular mycorrhizal fungi from temperate agricultural grassland. Mycorrhiza 17:145-152
13. Geue H, Hock B (2004) Determination of Acaulospora longula and Glomus subgroup Aa in plant roots from grassland using new primers against the large subunit ribosomal DNA. Mycol Res 108:76-83
14. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
15. Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW (1998) Ploughing up the wood-wide web? Nature 394:431
16. Helgason T, Merryweather JW, Denison J, Wilson P, Young JPW, Fitter AH (2002) Selectivity and functional diversity in arbuscular mycorrhizas of co-occuring fungi and plants from temperate deciduous woodland. J Ecol 90:371-384
17. Helgason T, Watson IJ, Young PW (2003) Phylogeny of the Glomerales and Diversisporales (Fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences. FEMS Microbiol Lett 229:127-132
18. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754-755
19. Husband R, Herre EA, Turner SL, Gallery R, Young PW (2002) Molecular diversity of arbuscular mycorrhizal fungi and patterns of host association over time and space in tropical forest. Mol Ecol 11:2669-2678
20. Kottke I, Nebel M (2005) The evolution of mycorrhiza-like associations in liverworts: an update. New Phytol 167:330-334
21. Kovács GM, Bagi I (2001) Mycorrhizal status of a mixed deciduous forest from the Great Hungarian Plain with special emphasis on the potential mycorrhizal partners of Terfezia terfezioides (Matt.) Trappe. Phyton 41:161-168
22. Kovács GM, Kottke I, Oberwinkler F (2003) Light and electron microscopic study on the mycorrhizae of sporophytes of Botrychium virginianum-arbuscular structures resembling fossil forms. Plant Biol 5:574-580
23. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
24. Landwehr M, Hildebrandt U, Wilde P, Nawrath K, Tóth T, Biró B, Bothe H (2002) The arbuscular mycorrhizal fungus Glomus geosporum in European saline sodic and gypsum soils. Mycorrhiza 12:199-211
25. Morton JB (1993) Problems and solutions for the integration of glomalean taxonomy, systematic biology, and the study of endomycorrhizal phenomena. Mycorrhiza 2:97-109
26. Nicolson TH, Schenck NC (1979) Endogonaceous mycorrhizal endophytes in Florida. Mycologia 71:178-198
27. Öpik M, Moora M, Liira J, Kõljalg U, Zobel M, Sen R (2003) Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forests and grassland soils. New Phytol 160:581-593
28. Öpik M, Moora M, Liira J, Zobel M (2006) Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. J Ecol 94:778-790
29. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
30. Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD (2001) Horsetails and ferns are a monophyletic group and the closest relatives to seed plants. Nature 409:618-622
31. Read DJ, Ducket JG, Francis R, Ligrone R, Russel A (2000) Symbiotic fungal associations in "lower" plants. Philos Trans R Soc London B 355:815-831
32. Redecker D (2000) Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots. Mycorrhiza 10:73-80
33. Redecker D, Hijri I, Wiemken A (2003) Molecular indetification of arbuscular mycorrhizal fungi in roots: perspectives and problems. Folia Geobot 38:113-124
34. Rodríguez-Echeverría S, Freitas H (2006) Diversity of AMF associated with Ammophila arenaria ssp. arundinacea in Portuguese sand dunes. Mycorrhiza 16:543-552
35. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
36. Russel J, Bulman S (2005) The liverwort Marchantia foliacea forms specialized symbiosis with arbuscular mycorrhizal fungi in the genus Glomus. New Phytol 165:567-579
37. Schmid E, Oberwinkler F (1996) Light and electron microscopy of a distinctive VA mycorrhiza in mature sporophytes of Ophioglossum reticulatum. Mycol Res 100:843-849
38. Schüßler A, Schwarzott D, Walker C (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol Res 105:1413-1421
39. Schwarzott D, Walker C, Schüßler A (2001) Glomus, the largest genus of the arbuscular mycorrhizal fungi (Glomales), is non-monophyletic. Mol Phylogenet Evol 21:190-197
40. da Silva GA, Lumini E, Maia LC, Bonfante P, Bianciotto V (2006) Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences. Mycorrhiza 16:183-189
41. Simon L, Lalonde M, Bruns TD (1992) Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Appl Environ Microbiol 58:291-293
42. Simon L, Bousquet J, Lévesque RC, Lalonde M (1993) Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants. Nature 363:67-69
43. de Souza FA, Declerck S, Smit E, Kowalchuk GA (2005) Morphological, ontogenetic and molecular characterization of Scutellospora reticulata (Glomeromycota). Mycol Res 109:697-706
44. Staden R, Beal KF, Bonfield JK (2000) The Staden package, 1998. Methods Mol Biol 132:115-130
45. Stubblefield SP, Taylor TN, Trappe JM (1987) Fossil mycorrhizae: a case for symbiosis. Science 237:59-60
46. Szego D, Rudnóy S, Zöld-Balogh Á, Bratek Z (2007) Homoki szarvasgombával beoltott akáccsemeték mikorrhizáinak és gyökérasszociált gombáinak morfológiai és molekuláris vizsgálata. Mikol Közl (in press)
47. Turnau K, Anielska T, Jurkiewicz A (2005) Mycothallic/mycorrhizal symbiosis of chlorophyllous gametophytes and sporophytes of a fern, Pellaea viridis (Forsk.) Prantl (Pellaeaceae, Pteridales). Mycorrhiza 15:121-128
48. Vallino M, Massa N, Lumini E, Bianciotto V, Berta G, Bonfante P (2006) Assessment of arbuscular mycorrhizal fungal diversity in roots of Solidago gigantea growing in a polluted soil in Northern Italy. Environ Microbiol 8:971-983
49. van Tuinen D, Jacquot E, Zhao B, Gollotte A, Gianinazzi-Pearson V (1998) Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR. Mol Ecol 7:879-887
50. Wagner WH (1990) Ophioglossaceae. In: Kramer KU, Green PS (eds) The families and genera of vascular plants. Volume I. Pteridophytes and Gymnosperms. Springer, Berlin 193-197
51. Walker C, Blaszkowski J, Schüßler A (2004) Gerdemannia gen. nov., a genus separated from Glomus, and Gerdemanniaceae fam. nov., a new family in the Glomeromycota. Mycol Res 108:707-718
52. Wang B, Qiu Y-L (2006) Phylogenetic distribution and evolution of mycorrhizas in land plants. Mycorrhiza 16:299-363
53. White TJ, Bruns TD, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Brinsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322
54. Whitfield L, Richards AJ, Rimmer DL (2004) Relationships between soil heavy metal concentration and mycorrhizal colonisation in Thymus polytrichus in northern England. Mycorrhiza 14:55-62
55. Wolfe BE, Mummey DL, Rillig MC, Klironomos JN (2007) Small-scale spatial heterogeneity of arbuscular mycorrhizal fungal abundance and community composition in a wetland plant community. Mycorrhiza 17:175-183
56. Wubet T, Weiss M, Kottke I, Teketay D, Oberwinkler F (2003) Molecular diversity of arbuscular mycorrhizal fungi in Prunus africana, an endangered medicinal tree species in dry Afromontane forests of Ethiopia. New Phytol 161:517-528
57. Wubet T, Weiss M, Kottke I, Teketay D, Oberwinkler F (2006a) Phylogenetic analysis of nuclear small subunit rDNA sequences suggests that the endangered African Pencil Cedar, Juniperus procera, is associated with distinct members of Glomeraceae. Mycol Res 110:1059-1069
58. Wubet T, Weiss M, Kottke I, Oberwinkler F (2006b) Two threatened coexisting indigenous conifer species in the dry Afromontane forests of Ethiopia are associated with distinct arbuscular mycorrhizal communities. Cab J Bot 84:1617-1627
59. Zhang Y, Guo LD, Liu RJ (2004) Arbuscular mycorrhizal fungi associated with common pteridophytes in Dujiangyan, southwest China. Mycorrhiza 14:25-30
60. Zhao ZW (2000) The arbuscular mycorrhizas of pteridophytes in Yunnan, southwest China: evolutionary interpretations. Mycorrhiza 10:145-149