메뉴 건너뛰기




Volumn 13, Issue 1, 2013, Pages

Clonal diversity and estimation of relative clone age: Application to agrobiodiversity of yam (Dioscorea rotundata)

Author keywords

Approximate Bayesian Computation; Clone; Diversity; Mutation; Yam

Indexed keywords

ANIMALIA; DIOSCOREA ALATA; DIOSCOREA ROTUNDATA;

EID: 84887369836     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-13-178     Document Type: Article
Times cited : (15)

References (34)
  • 1
    • 34249988753 scopus 로고    scopus 로고
    • Asexual reproduction: genetics and evolutionary aspects
    • 10.1007/s00018-007-6515-2, 17396223
    • de Meeûs T, Prugnolle F, Agnew P. Asexual reproduction: genetics and evolutionary aspects. Cell Mol Life Sci 2007, 64:1355-1372. 10.1007/s00018-007-6515-2, 17396223.
    • (2007) Cell Mol Life Sci , vol.64 , pp. 1355-1372
    • de Meeûs, T.1    Prugnolle, F.2    Agnew, P.3
  • 2
    • 34247379370 scopus 로고    scopus 로고
    • Genetic diversity and geographical dispersal in grapevine clones revealed by microsatellite markers
    • 10.1139/g06-102, 17426761
    • Moncada X, Pelsy F, Merdinoglu D, Hinrichsen P. Genetic diversity and geographical dispersal in grapevine clones revealed by microsatellite markers. Genome 2006, 49:1459-1472. 10.1139/g06-102, 17426761.
    • (2006) Genome , vol.49 , pp. 1459-1472
    • Moncada, X.1    Pelsy, F.2    Merdinoglu, D.3    Hinrichsen, P.4
  • 3
    • 37249022873 scopus 로고    scopus 로고
    • Standardizing methods to address clonality in population studies
    • 10.1111/j.1365-294X.2007.03535.x, 17944846
    • Arnaud-Haond S, Duarte CM, Alberto F, Serrão EA. Standardizing methods to address clonality in population studies. Mol Ecol 2007, 16:5115-5139. 10.1111/j.1365-294X.2007.03535.x, 17944846.
    • (2007) Mol Ecol , vol.16 , pp. 5115-5139
    • Arnaud-Haond, S.1    Duarte, C.M.2    Alberto, F.3    Serrão, E.A.4
  • 4
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian Computation in population genetics
    • 1462356, 12524368
    • Beaumont M, Zhang W, Balding DJ. Approximate Bayesian Computation in population genetics. Genetics 2002, 162:2025-2035. 1462356, 12524368.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.1    Zhang, W.2    Balding, D.J.3
  • 5
    • 84863661802 scopus 로고    scopus 로고
    • New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties
    • 10.1371/journal.pgen.1002703, 3349737, 22589740
    • Cornille A, Gladieux P, Smulders MJM, Roldán-Ruiz I, Laurens F, Le Cam B, Nersesyan A, Clavel J, Olonova M, Feugey L, et al. New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties. PLoS Genet 2012, 8:e1002703. 10.1371/journal.pgen.1002703, 3349737, 22589740.
    • (2012) PLoS Genet , vol.8
    • Cornille, A.1    Gladieux, P.2    Smulders, M.J.M.3    Roldán-Ruiz, I.4    Laurens, F.5    Le Cam, B.6    Nersesyan, A.7    Clavel, J.8    Olonova, M.9    Feugey, L.10
  • 6
    • 84860513444 scopus 로고    scopus 로고
    • Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans
    • 10.1111/j.1365-294X.2012.05535.x, 22439871
    • Dilmaghani A, Gladieux P, Gout L, Giraud T, Brunner PC, Stachowiak A, Balesdent M-H, Rouxel T. Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans. Mol Ecol 2012, 21:2519-2533. 10.1111/j.1365-294X.2012.05535.x, 22439871.
    • (2012) Mol Ecol , vol.21 , pp. 2519-2533
    • Dilmaghani, A.1    Gladieux, P.2    Gout, L.3    Giraud, T.4    Brunner, P.C.5    Stachowiak, A.6    Balesdent, M.-H.7    Rouxel, T.8
  • 8
    • 84872831266 scopus 로고    scopus 로고
    • Estimating divergence time for two evolutionarily significant units of a protected fish species
    • Stockwell CA, Heilveil JS, Purcell K. Estimating divergence time for two evolutionarily significant units of a protected fish species. Conservation Genetics 2013, 14:215-222.
    • (2013) Conservation Genetics , vol.14 , pp. 215-222
    • Stockwell, C.A.1    Heilveil, J.S.2    Purcell, K.3
  • 9
    • 84858383953 scopus 로고    scopus 로고
    • Evolutionary history of Pearl Millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication
    • 10.1093/molbev/msr287, 22114357
    • Clotault J, Thuillet AC, Buiron M, dM S, Couderc M, Haussmann BIG, Mariac C, Vigouroux Y. Evolutionary history of Pearl Millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol Biol Evol 2012, 29:1199-1212. 10.1093/molbev/msr287, 22114357.
    • (2012) Mol Biol Evol , vol.29 , pp. 1199-1212
    • Clotault, J.1    Thuillet, A.C.2    Buiron, M.3    dM, S.4    Couderc, M.5    Haussmann, B.I.G.6    Mariac, C.7    Vigouroux, Y.8
  • 10
    • 84888033717 scopus 로고    scopus 로고
    • FAOSTAT © FAO
    • FAOSTAT © FAO 2013, http://faostat.fao.org, FAOSTAT © FAO.
    • (2013)
  • 11
    • 0004794234 scopus 로고
    • The origins and domestication of yams in Africa
    • Mouton Publisher, Harlan JR
    • Coursey DG. The origins and domestication of yams in Africa. Origins of African domestication 1976, 383-408. Mouton Publisher, Harlan JR.
    • (1976) Origins of African domestication , pp. 383-408
    • Coursey, D.G.1
  • 13
    • 0032770296 scopus 로고    scopus 로고
    • Morphological diversity, cultivar groups and possible descent in the cultivated yams (Dioscorea cayenensis/D. rotundata) complex in Benin Republic
    • Dansi A, Mignouna HD, Zoundjihékpon J, Sangare A, Asiedu R, Quin FM. Morphological diversity, cultivar groups and possible descent in the cultivated yams (Dioscorea cayenensis/D. rotundata) complex in Benin Republic. Genetic Resources and Crop Evolution 1999, 46:371-388.
    • (1999) Genetic Resources and Crop Evolution , vol.46 , pp. 371-388
    • Dansi, A.1    Mignouna, H.D.2    Zoundjihékpon, J.3    Sangare, A.4    Asiedu, R.5    Quin, F.M.6
  • 15
    • 80053329446 scopus 로고    scopus 로고
    • Genetic structure of farmer-managed varieties in clonally-propagated crops
    • 10.1007/s10709-011-9607-8, 21898046
    • Scarcelli N, Tostain S, Vigouroux Y, Luong V, Baco MN, Agbangla C, Daïnou O, Pham JL. Genetic structure of farmer-managed varieties in clonally-propagated crops. Genetica 2011, 139:1055-1064. 10.1007/s10709-011-9607-8, 21898046.
    • (2011) Genetica , vol.139 , pp. 1055-1064
    • Scarcelli, N.1    Tostain, S.2    Vigouroux, Y.3    Luong, V.4    Baco, M.N.5    Agbangla, C.6    Daïnou, O.7    Pham, J.L.8
  • 16
    • 33745882843 scopus 로고    scopus 로고
    • Gestion dynamique de la diversité variétale des ignames cultivées (Dioscorea cayenensis-D. rotundata) dans la commune de Sinendé au nord Bénin
    • Baco MN, Tostain S, Mongbo RL, Daïnou O, Agbangla C. Gestion dynamique de la diversité variétale des ignames cultivées (Dioscorea cayenensis-D. rotundata) dans la commune de Sinendé au nord Bénin. Plant Genetic Resources Newsletter 2004, 139:18-24.
    • (2004) Plant Genetic Resources Newsletter , vol.139 , pp. 18-24
    • Baco, M.N.1    Tostain, S.2    Mongbo, R.L.3    Daïnou, O.4    Agbangla, C.5
  • 17
    • 0034195967 scopus 로고    scopus 로고
    • Domestication of yams (Dioscorea cayenesis-rotundata) within the Bariba ethnic group in Benin
    • Dumont R, Vernier P. Domestication of yams (Dioscorea cayenesis-rotundata) within the Bariba ethnic group in Benin. Outlook on Agriculture 2000, 29.
    • (2000) Outlook on Agriculture , vol.29
    • Dumont, R.1    Vernier, P.2
  • 18
    • 0037356607 scopus 로고    scopus 로고
    • Studies on yam domestication and farmers' practices in Benin and Nigeria
    • Vernier P, Orkwor GC, Dossou AR. Studies on yam domestication and farmers' practices in Benin and Nigeria. Outlook on Agriculture 2003, 32:35-41.
    • (2003) Outlook on Agriculture , vol.32 , pp. 35-41
    • Vernier, P.1    Orkwor, G.C.2    Dossou, A.R.3
  • 19
    • 33745924711 scopus 로고    scopus 로고
    • Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin
    • 10.1111/j.1365-294X.2006.02958.x, 16842416
    • Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Daïnou O, Pham JL. Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin. Mol Ecol 2006, 15:2421-2431. 10.1111/j.1365-294X.2006.02958.x, 16842416.
    • (2006) Mol Ecol , vol.15 , pp. 2421-2431
    • Scarcelli, N.1    Tostain, S.2    Vigouroux, Y.3    Agbangla, C.4    Daïnou, O.5    Pham, J.L.6
  • 20
    • 0036718239 scopus 로고    scopus 로고
    • Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis
    • 10.1046/j.1365-294X.2002.01576.x, 12207711
    • Estoup A, Jarne P, Cornuet J-M. Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol Ecol 2002, 11:1591-1604. 10.1046/j.1365-294X.2002.01576.x, 12207711.
    • (2002) Mol Ecol , vol.11 , pp. 1591-1604
    • Estoup, A.1    Jarne, P.2    Cornuet, J.-M.3
  • 21
    • 0037197985 scopus 로고    scopus 로고
    • A single domestication for maize shown by multilocus microsatellite genotyping
    • 10.1073/pnas.052125199, 122905, 11983901
    • Matsuoka Y, Vigouroux Y, Goodman M, Sanchez GJ, Buckler E, Doebley J. A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci U S A 2002, 99:6080-6084. 10.1073/pnas.052125199, 122905, 11983901.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6080-6084
    • Matsuoka, Y.1    Vigouroux, Y.2    Goodman, M.3    Sanchez, G.J.4    Buckler, E.5    Doebley, J.6
  • 23
    • 0034518187 scopus 로고    scopus 로고
    • Estimation of microsatellite mutation rates in Drosophila melanogaster
    • 10.1017/S0016672300004791, 11204979
    • Vazquez JF, Perez T, Albornoz J, Dominguez A. Estimation of microsatellite mutation rates in Drosophila melanogaster. Genet Res 2000, 76:323-326. 10.1017/S0016672300004791, 11204979.
    • (2000) Genet Res , vol.76 , pp. 323-326
    • Vazquez, J.F.1    Perez, T.2    Albornoz, J.3    Dominguez, A.4
  • 24
    • 0033787613 scopus 로고    scopus 로고
    • Assessment of genetic variability in a traditional cassava (Manihot esculenta Crantz) farming system, using AFLP markers
    • 10.1046/j.1365-2540.2000.00749.x, 11012725
    • Elias M, Panaud O, Robert T. Assessment of genetic variability in a traditional cassava (Manihot esculenta Crantz) farming system, using AFLP markers. Heredity 2000, 85:219-230. 10.1046/j.1365-2540.2000.00749.x, 11012725.
    • (2000) Heredity , vol.85 , pp. 219-230
    • Elias, M.1    Panaud, O.2    Robert, T.3
  • 25
    • 55549121605 scopus 로고    scopus 로고
    • Evolution of cassava (Manihot esculenta Crantz) after recent introduction into a South Pacific Island system: the contribution of sex to the diversification of a clonally propagated crop
    • 10.1139/G08-080, 18956024
    • Sardos J, McKey D, Duval MF, Malapa R, Noyer JL, Lebot V. Evolution of cassava (Manihot esculenta Crantz) after recent introduction into a South Pacific Island system: the contribution of sex to the diversification of a clonally propagated crop. Genome 2008, 51:912-921. 10.1139/G08-080, 18956024.
    • (2008) Genome , vol.51 , pp. 912-921
    • Sardos, J.1    McKey, D.2    Duval, M.F.3    Malapa, R.4    Noyer, J.L.5    Lebot, V.6
  • 26
    • 34548434666 scopus 로고    scopus 로고
    • Nature of taro (Colocasia esculenta (L.) Schott) genetic diversity prevalent in a Pacific Ocean island, Vanua Lava, Vanuatu
    • Caillon S, Quero-Garcia J, Lescure JP, Lebot V. Nature of taro (Colocasia esculenta (L.) Schott) genetic diversity prevalent in a Pacific Ocean island, Vanua Lava, Vanuatu. Genetic Resources and Crop Evolution 2006, 53:1273-1289.
    • (2006) Genetic Resources and Crop Evolution , vol.53 , pp. 1273-1289
    • Caillon, S.1    Quero-Garcia, J.2    Lescure, J.P.3    Lebot, V.4
  • 29
    • 84907174683 scopus 로고    scopus 로고
    • Les savoirs paysans traditionnels conservent-ils encore l'agrobiodiversité au Bénin? Biotechnologie, Agronomie
    • Baco MN, Biaou G, Pinton F, Lescure JP. Les savoirs paysans traditionnels conservent-ils encore l'agrobiodiversité au Bénin? Biotechnologie, Agronomie. Société et Environnement 2007, 11:201-210.
    • (2007) Société et Environnement , vol.11 , pp. 201-210
    • Baco, M.N.1    Biaou, G.2    Pinton, F.3    Lescure, J.P.4
  • 30
    • 79957566575 scopus 로고    scopus 로고
    • A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in Monocotyledons
    • 10.1371/journal.pone.0019954, 3102674, 21637837
    • Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, D'Anfray A, Vigouroux Y, Pintaud J-C, et al. A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in Monocotyledons. PLoS One 2011, 6:e19954. 10.1371/journal.pone.0019954, 3102674, 21637837.
    • (2011) PLoS One , vol.6
    • Scarcelli, N.1    Barnaud, A.2    Eiserhardt, W.3    Treier, U.A.4    Seveno, M.5    D'Anfray, A.6    Vigouroux, Y.7    Pintaud, J.-C.8
  • 32
    • 0038350459 scopus 로고    scopus 로고
    • A comparative assessment of molecular marker assays (AFLP, RAPD and SSR) for white yam (Dioscorea rotundata) germplasm characterisation
    • Mignouna HD, Abang MM, Fagbemi SA. A comparative assessment of molecular marker assays (AFLP, RAPD and SSR) for white yam (Dioscorea rotundata) germplasm characterisation. Annals of Applied Biology 2003, 142:269-276.
    • (2003) Annals of Applied Biology , vol.142 , pp. 269-276
    • Mignouna, H.D.1    Abang, M.M.2    Fagbemi, S.A.3
  • 34
    • 77951177432 scopus 로고    scopus 로고
    • ABCtoolbox: a versatile toolkit for aproximate Bayesian computations
    • 10.1186/1471-2105-11-116, 2848233, 20202215
    • Wegmann D, Leuenberger C, Neuenschwander S, Excoffier L. ABCtoolbox: a versatile toolkit for aproximate Bayesian computations. BMC Bioinformatics 2010, 11:116. 10.1186/1471-2105-11-116, 2848233, 20202215.
    • (2010) BMC Bioinformatics , vol.11 , pp. 116
    • Wegmann, D.1    Leuenberger, C.2    Neuenschwander, S.3    Excoffier, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.