Genetic diversity and geographical dispersal in grapevine clones revealed by microsatellite markers

Genome

Volumn 49, Issue 11, 2006, Pages 1459-1472

  Moncada, Ximena ^a,c   Pelsy, Frédérique ^b   Merdinoglu, Didier ^b   Hinrichsen, Patricio ^a  

^a INSTITUTO DE INVESTIGACIONES AGROPECUARIAS   (Chile)

^b CEMAGREF   (France)

^c DEPARTAMENTO DE BIOLOGÍA   (Chile)

Author keywords

Cabernet Sauvignon; Chimerism; Clone; Genetic diversity; Microsatellite; Phylogeny

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CELL CLONE; CHIMERA; CLUSTER ANALYSIS; GENETIC VARIABILITY; GENETICS; GRAPE; PHYLOGENY; QUALITY CONTROL;

CHIMERA; CLONE CELLS; CLUSTER ANALYSIS; MICROSATELLITE REPEATS; PHYLOGENY; QUALITY CONTROL; VARIATION (GENETICS); VITIS;

VITACEAE; VITIS; VITIS VINIFERA;

EID: 34247379370     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G06-102     Document Type: Article

References (56)

1. Adam-Blondon, A.F., Roux, C., Claux, D., Butterlin, G., Merdinoglu, D., and This, P. 2004. Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics. Theor. Appl. Genet. 109: 1017-1027. doi:10.1007/s00122-004-1704-y.
2. Aranzana, M.J., Carbó, J., and Arús, P. 2003. Microsatellite variability in peach [Prunus persica (L.) Batsch]: cultivar identification, marker mutation, pedigree inferences and population structure. Theor. Appl. Genet. 106: 1341-1352.
3. Bertsch, C., Kieffer, F., Triouleyre, C., Butterlin, G., Merdinoglu, D., and Walter, B. 2003. Molecular profiling of Vitis vinifera Chardonnay obtained by somatic embryogenesis. J. Int. Sci. Vigne Vin 37: 223-227.
4. Billiard, R. 1913. La Vigne dans l'antiquité. Laffitte, Lyon.
5. Bisson, J. 1995. The principal ecogeographical groups in French grapevines assortment. J. Int. Sci. Vigne Vin 29: 63-68.
6. Bowers, J.E., and Meredith, C.P. 1997. The parentage of a classic wine grape. Nat. Genet. 16: 84-87. doi:10.1038/ng0597-84.
7. Bowers, J.E., Dangl, G.S., Vignani, R., and Meredith, C.P. 1996. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome, 39: 628-633.
8. Bowers, J.E., Dangl, G.S., and Meredith, C.P. 1999. Development and characterization of additional microsatellite DNA markers for grape. Am. J. Enol. Vitic. 50: 243-246.
9. Bretó, M.P., Ruiz, C., Pina, J.A., and Asíns, M.J. 2001. The diversification of Citrus clementina Hort. Ex Tan., a vegetively propagated crop species. Mol. Phylogenet. Evol. 21: 285-293.
10. Crespan, M. 2003. Evidence on the evolution of polymorphism of microsatellite markers in varieties of Vitis vinifera L. Theor. Appl. Genet. 108: 231-237.
11. Crespan, M., and Milani, N. 2001. The Muscats: a molecular analysis of synonims, homonyms and genetic relationships within a large family of grapevine cultivars. Vitis, 40: 23-30.
12. Dangl, G.S., Mendum, M.L., Prins, B.H., Walker, M.A., Meredith, C.P., and Simon, C.J. 2001. Simple sequence repeat analysis of a clonally propagated species: a tool for managing a grape germplasm collection. Genome, 44: 432-438.
13. Ellegren, H. 2004. Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445. doi:10.1038/nrg1348.
14. ENTAV. INRA, ENSAM, ONIVINS, Ministère de l'Agriculture, de la Peche et de l'Alimentation, CTPS. 1995. Catalogue des variétés et clones de vigne cultivés en France. ENTAV, Le Grau du Roi, France.
15. Estoup, A., Jarne, P., and Cornuet, J.-M. 2002. Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Invited review. Mol. Ecol. 11: 1591-1604. doi:10.1046/j.1365- 294X.2002. 01576.x.
16. Franks, T., Botta, R., and Thomas, M.R. 2002. Chimerism in grapevines: implications for cultivar identity, ancestry and genetic improvement. Theor. Appl. Genet. 104: 192-199. doi:10. 1007/s001220100683.
17. Galet, P. 2000. Dictionaire encyclopédique des cépages. Hachette Livre, Italy.
18. González-Techera, A., Jubany, S., Ponce de León, I., Boido, E., Dellacassa, E., Carrau, F.M., et al. 2004. Molecular diversity within clones of cv. Tannat (Vitis vinífera). Vitis, 43: 179-185.
19. Hartmann, H.T., Kester, D.E., Davis, F.T., Jr., and Genev, R.L. 1997. Plant propagation: principles and practices. Prentice Hall, New Jersey.
20. Hinrichsen, P., Narváez, C., Valenzuela, J., Muñoz, C., Bowers, J.E., and Meredith, C.P. 2000. Fingerprinting of grape cultivars grown in Chile: comparison of methods based on anonymous sequences and a set of microsatellite loci. Acta Hort. (ISHS) 528: 163-170.
21. Hinrichsen, P., Reyes, M.A., Castro, A., Araya, S., Garnier, M., Prieto, H., et al. 2005. Genetic transformation of grapevines with Trichoderma harzianum and antimicrobial peptide genes for improvement of fungal tolerance. Acta Hort.(ISHS) 689: 469-474.
22. Hocquigny, S., Pelsy, F., Dumas, V., Kindt, S., Heloir, M.-C., and Merdinoglu, D. 2004. Diversification within grapevine cultivars goes through chimeric states. Genome, 47: 579-589. doi:10. 1139/g04-006.
23. Huglin, P., and Schneider, P. 1998. Biologie et écologie de la vigne. Lavoisier Tec & Doc., Paris.
24. Ibáñez, J., De Andrés, M.T., Molino, A., and Borrego, J. 2003. Genetic study of key Spanish grapevine varieties using microsatellite analysis. Am. J. Enol. Vitic. 54: 22-30.
25. Imazio, S., Labra, M., Grassi, F., Winfield, M., Bardini, M., and Scienza, A. 2002. Molecular tools for clone identification: the case of the grapevine cultivar 'Traminer'. Plant Breed. 121: 531-535. doi:10.1046/j.1439-0523.2002.00762.x.
26. Kaeppler, S.M., Kaeppler, H.F., and Rhee, Y. 2000. Epigenetic aspects of somaclonal variation in plants. Plant Mol. Biol. 43: 179-188. doi:10.1023/A:1006423110134.
27. Kobayashi, S., Goto-Yamamoto, N., and Hirochika, H. 2004. Retrotransposon-induced mutations in grape skin color. Science (Washington, D.C.), 304: 982. doi:10.1126/science.1095011.
28. Li, Z., Jayasankar, S., and Gray, D.J. 2001. Expression of a bifunctional green fluorescent protein (GFP) fusion marker under the control of three constitutive promoters and enhanced derivatives in transgenic grape (Vitis vinifera). Plant Sci. 160: 877-887. doi:10.1016/S0168-9452(01)00336- 3.
29. Lodhi, M.A., Ye, G., Weeden, N.F., and Reisch, B.I. 1994. A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Reptr. 12: 6-13.
30. Masi, E., Vignani, R., Sensi, E., Scali, M., Cresti, M., and Boselli, M. 2004. Sequence analysis of a microsatellite an dits flanking regions in intraspecific hybrids of grapevine (Vitis vinifera L.). Vitis, 43: 69-73.
31. McGovern, P.E., Glusker, D.L., Exner, L.J., and Voigt, M.M. 1996. Neolithic resinated wine. Nature (London), 381: 480-481. doi:10.1038/381480a0.
32. Merdinoglu, D., Butterlin, G., Bevilacqua, L., Chiquet, V., Adam-Blondon, A.-F., and Decroocq, S. 2005. Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol. Breed. 15: 349-366. doi:10.1007/s11032-004-7651-0.
33. Moncada, X., Muñoz, L., Merdinoglu, D., Castro, M.H., Hinrichsen, P. 2005. Clonal polymorphism in the red wine cultivars 'Carmenère' and 'Cabernet Sauvignon'. Acta Hortic. 689: 513-519.
34. Morgante, M., and Olivieri, A.M. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182. doi:10. 1046/j.1365-313X.1993.t01-9-00999.x.
35. Muñoz, I., Valenzuela, J., and Pezoa, J. 1985. Comparación entre tipos de Cabernet Sauvignon. IPA La Platina (Chile), 28: 35-37.
36. Page, R.D.M. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
37. Pavlíček, A., Hrdá, S̊., and Flegr, J. 1999. Free-Tree-freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biol. (Praha), 45: 97-99.
38. Powell, W., Machray, G.C., and Provan, J. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
39. Rahman, M.H., and Rajora, O.P. 2001. Microsatellite DNA somaclonal variation in propagated trembling aspen (Populus tremuloides). Plant Cell Rep. 20: 531-536.
40. Regner, F., Wiedeck, E., and Stadibauer, A. 2000. Differentiation and identification of White Riesling clones by genetic markers. Vitis, 39: 103-107.
41. Riaz, S., Garrison, K.E., Dangl, G.S., Boursiquot, J.M., and Meredith, C.P. 2002. Genetic divergence and chimerism within ancient asexually propagated winegrape cultivars. J. Am. Soc. Hortic. Sci. 127: 508-514.
42. Riaz, S., Dangl, G.S., Edwards, K.J., and Meredith, C.P. 2004. A Microsatellite marker based framework linkage map of Vitis vinifera L. Theor. Appl. Genet. 108: 864-872. doi:10.1007/ s00122-003-1488-5.
43. Rohlf, F.J. 1997. NTSYS-pc: numerical taxonomy and multivariate analysis system, Version 2.00. Exeter Software publications. Setauket, New York.
44. Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
45. Scorza, R., Mehlenbacher, S.A., and Lightner, G.W. 1985. Inbreeding and coancestry of freestone peach cultivars of the Eastern United States and implications for peach germplasm improvement. J. Am. Soc. Hortic. Sci. 110: 547-552.
46. Sefc, K.M., Steinkellner, H., Wagner, H.W., Glossi, J., and Regner, F. 1997. Application of microsatellite markers to parentage studies in grapevine. Vitis, 36: 179-183.
47. Sefc, K.M., Regner, F., Turetschek, E., Glossi, J., and Steinkeller, H. 1999. Identification of microsatellite sequences in Vitis Riparia and their applicability for genotyping of different Vitis species. Genome, 42: 367-373. doi:10.1139/gen-42-3-367.
48. Silvestroni, O., Di Pietro, D., Intrieri, C., Vignani, R., Filippetti, I., Del Casino, C., et al. 1997. Detection of genetic diversity among clones of cv. Fontana (Vitis vinifera L.) by microsatellite DNA polymorphism analysis. Vitis, 36: 147-150.
49. Sneath, P.H.A., and Sokal, R.R. 1973. Numerical Taxonomy. The principle and practice of numerical classification. W.H. Freeman and Co., San Francisco.
50. This, P., Jung, A., Bocacci, P., Borrego, J., Botta, R., Constantini, L., et al. 2004. Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor. Appl. Genet. 109: 1448-1458. doi:10.1007/s00122-004-1760-3.
51. Thomas, M.R., and Scott, N.S. 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor. Appl. Genet. 86: 985-990.
52. Thompson, M.M., and Olmo, H.P. 1963. Cytohistological studies of cytochimeric and tetraploid grapes. Am. J. Bot. 50: 901-906. doi:10.2307/2439777.
53. Walter, B., and Martelli, G.P. 1998. Considerations on grapevine selection and certification. Vitis, 37: 87-90.
54. Venturi, S., Dondini, L., Donini, P., and Sansavini, S. 2005. Retrotransposon characterization and fingerprinting of apple clones by S-SAP markers. Theor. Appl. Genet. 112: 440-444.
55. Viala, P., and Vermorel, V. 1901-1910. Ampélographie. Masson, Paris.
56. Zohary, D., and Spiegel-Roy, P. 1975. Beginnings of fruit growing in the old world. Science (Washington, D.C.), 187: 319-327.