-
1
-
-
0036200510
-
Salinibacter ruber gen. nov., sp. nov., a novel extreme halophilic member of the bacteria from saltern crystallizer ponds
-
Antón J, Oren A, Benlloch S, Rodríguez-Valera F, Amann R, Rosselló-Mora R (2002) Salinibacter ruber gen. nov., sp. nov., a novel extreme halophilic member of the bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 52: 485-491.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 485-491
-
-
Antón, J.1
Oren, A.2
Benlloch, S.3
Rodríguez-Valera, F.4
Amann, R.5
Rosselló-Mora, R.6
-
2
-
-
75949108066
-
Galaxy: a web-based genome analysis tool for experimentalists
-
Chap 19, Unit 19. 10
-
Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol, Chap 19, Unit 19. 10. 1-21.
-
(2010)
Curr Protoc Mol Biol
, pp. 1-21
-
-
Blankenberg, D.1
von Kuster, G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Nekrutenko, A.7
Taylor, J.8
-
3
-
-
84860833690
-
The amino acid composition of proteins from anaerobic halophilic bacteria of the order Halanaerobiales
-
Elevi Bardavid R, Oren A (2012) The amino acid composition of proteins from anaerobic halophilic bacteria of the order Halanaerobiales. Extremophiles 16: 567-572.
-
(2012)
Extremophiles
, vol.16
, pp. 567-572
-
-
Elevi Bardavid, R.1
Oren, A.2
-
4
-
-
0025328505
-
Flexistipes sinusarabici, a novel genus and species of eubacteria occurring in the Atlantis II Deep brines of the Red Sea
-
Fiala G, Woese CR, Langworthy TA, Stetter KO (1990) Flexistipes sinusarabici, a novel genus and species of eubacteria occurring in the Atlantis II Deep brines of the Red Sea. Arch Microbiol 154: 120-126.
-
(1990)
Arch Microbiol
, vol.154
, pp. 120-126
-
-
Fiala, G.1
Woese, C.R.2
Langworthy, T.A.3
Stetter, K.O.4
-
5
-
-
0028783450
-
Omoadaptation in bacteria
-
Galinski EA (1995) Omoadaptation in bacteria. Adv Microb Physiol 37: 272-328.
-
(1995)
Adv Microb Physiol
, vol.37
, pp. 272-328
-
-
Galinski, E.A.1
-
6
-
-
77956095592
-
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
-
Ghai R, Martin-Cuadrado AB, Gonzaga Molto A, García Heredia I, Cabrera R, Martin J, Verdú M, Deschamps P, Moreira D, López-García P, Mira A, Rodriguez-Valera F (2010) Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. ISME J 4: 1154-1166.
-
(2010)
ISME J
, vol.4
, pp. 1154-1166
-
-
Ghai, R.1
Martin-Cuadrado, A.B.2
Gonzaga, M.A.3
García, H.I.4
Cabrera, R.5
Martin, J.6
Verdú, M.7
Deschamps, P.8
Moreira, D.9
López-García, P.10
Mira, A.11
Rodriguez-Valera, F.12
-
7
-
-
84883703281
-
New abundant microbial groups in aquatic hypersaline environments
-
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado A-B, Megumi Mizuno C, McMahon KD, Papke RT, Stepanauskas R, Rodríguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F (2011) New abundant microbial groups in aquatic hypersaline environments. Sci Rep 1: 135.
-
(2011)
Sci Rep
, vol.1
, pp. 135
-
-
Ghai, R.1
Pašić, L.2
Fernández, A.B.3
Martin-Cuadrado, A.-B.4
Megumi, M.C.5
McMahon, K.D.6
Papke, R.T.7
Stepanauskas, R.8
Rodríguez-Brito, B.9
Rohwer, F.10
Sánchez-Porro, C.11
Ventosa, A.12
Rodríguez-Valera, F.13
-
8
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res 15: 1451-1455.
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
Miller, W.11
Kent, W.J.12
Nekrutenko, A.13
-
9
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappé MS, Short JM, Carrington JC, Mathur EJ (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309: 1242-1245.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
Bibbs, L.7
Eads, J.8
Richardson, T.H.9
Noordewier, M.10
Rappé, M.S.11
Short, J.M.12
Carrington, J.C.13
Mathur, E.J.14
-
10
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
The Galaxy Team
-
Goecks J, Nekrutenko A, Taylor J, The Galaxy Team (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86.
-
(2010)
Genome Biol
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
11
-
-
80053426746
-
T)
-
T). Stand Genomic Sci 4: 312-321.
-
(2011)
Stand Genomic Sci
, vol.4
, pp. 312-321
-
-
Ivanova, N.1
Sikorski, J.2
Chertkov, O.3
Nolan, M.4
Lucas, S.5
Hammon, N.6
Deshpande, S.7
Cheng, J.-F.8
Tapia, R.9
Han, C.10
Goodwin, L.11
Pitluck, S.12
Huntemann, M.13
Liolios, K.14
Pagani, I.15
Mavromatis, K.16
Ovchinnikova, G.17
Pati, A.18
Chen, A.19
Palaniappan, K.20
Land, M.21
Hauser, L.22
Brambilla, E.-M.23
Palani, K.K.24
Rohde, M.25
Tindall, B.J.26
Göker, M.27
Detter, J.C.28
Woyke, T.29
Bristow, J.30
Eisen, J.A.31
Markowitz, V.32
Hugenholtz, P.33
Kyrpides, N.C.34
Klenk, H.-P.35
Lapidus, A.36
more..
-
12
-
-
51649088898
-
Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis
-
Ivars-Martínez E, D'Auria G, Rodríguez-Valera F, Sánchez-Porro C, Ventosa A, Ioint I, Mühling M (2008) Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis. Mol Ecol 17: 4092-4106.
-
(2008)
Mol Ecol
, vol.17
, pp. 4092-4106
-
-
Ivars-Martínez, E.1
D'Auria, G.2
Rodríguez-Valera, F.3
Sánchez-Porro, C.4
Ventosa, A.5
Ioint, I.6
Mühling, M.7
-
13
-
-
44649171625
-
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
-
Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P (2008) Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol 4: 198.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 198
-
-
Kunin, V.1
Raes, J.2
Harris, J.K.3
Spear, J.R.4
Walker, J.J.5
Ivanova, N.6
von Mering, C.7
Bebout, B.M.8
Pace, N.R.9
Bork, P.10
Hugenholtz, P.11
-
14
-
-
0016139829
-
Salt-dependent properties of proteins from extremely halophilic bacteria
-
Lanyi JK (1974) Salt-dependent properties of proteins from extremely halophilic bacteria. Bacteriol Rev 38: 272-290.
-
(1974)
Bacteriol Rev
, vol.38
, pp. 272-290
-
-
Lanyi, J.K.1
-
15
-
-
80054865547
-
T)
-
T). Stand Genomic Sci 5: 86-96.
-
(2011)
Stand Genomic Sci
, vol.5
, pp. 86-96
-
-
Lapidus, A.1
Chertkov, O.2
Nolan, M.3
Lucas, S.4
Hammon, N.5
Deshpande, S.6
Cheng, J.-F.7
Tapia, R.8
Han, C.9
Goodwin, L.10
Pitluck, S.11
Liolios, K.12
Pagani, I.13
Ivanova, N.14
Huntemann, M.15
Mavromatis, K.16
Mikhailova, N.17
Pati, A.18
Chen, A.19
Palaniappan, K.20
Land, M.21
Hauser, L.22
Brambilla, E.-M.23
Rohde, M.24
Abt, B.25
Spring, S.26
Göker, M.27
Bristow, J.28
Eisen, J.A.29
Markowitz, V.30
Hugenholtz, P.31
Kyrpides, N.C.32
Klenk, H.-P.33
Woyke, T.34
more..
-
16
-
-
62249192807
-
A single regulatory gene is sufficient to alter bacterial host range
-
Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG (2009) A single regulatory gene is sufficient to alter bacterial host range. Nature 458: 215-218.
-
(2009)
Nature
, vol.458
, pp. 215-218
-
-
Mandel, M.J.1
Wollenberg, M.S.2
Stabb, E.V.3
Visick, K.L.4
Ruby, E.G.5
-
17
-
-
36549017617
-
Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov
-
Mesbah NM, Hedrick DB, Peacock AD, Rohde M, Wiegel J (2007) Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov. Int J Syst Evol Microbiol 57: 2507-2512.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2507-2512
-
-
Mesbah, N.M.1
Hedrick, D.B.2
Peacock, A.D.3
Rohde, M.4
Wiegel, J.5
-
18
-
-
0034734270
-
Halophilic enzymes: proteins with a grain of salt
-
Mevarech M, Frolow F, Gloss LM (2000) Halophilic enzymes: proteins with a grain of salt. Biophys Chem 86: 155-164.
-
(2000)
Biophys Chem
, vol.86
, pp. 155-164
-
-
Mevarech, M.1
Frolow, F.2
Gloss, L.M.3
-
19
-
-
29144485325
-
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea
-
Mongodin EF, Nelson KE, Daugherty S, DeBoy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez-Perez G, Sharma AK, Nesbø CL, MacLeod D, Bapteste E, Doolittle WF, Charlebois RL, Legault B, Rodriguez-Valera F (2005) The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc Natl Acad Sci USA 102: 18147-18152.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 18147-18152
-
-
Mongodin, E.F.1
Nelson, K.E.2
Daugherty, S.3
Deboy, R.T.4
Wister, J.5
Khouri, H.6
Weidman, J.7
Walsh, D.A.8
Papke, R.T.9
Sanchez-Perez, G.10
Sharma, A.K.11
Nesbø, C.L.12
Macleod, D.13
Bapteste, E.14
Doolittle, W.F.15
Charlebois, R.L.16
Legault, B.17
Rodriguez-Valera, F.18
-
20
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung K-H, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S (2000) Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci USA 97: 12176-12181.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.S.8
Thorsson, V.9
Sbrogna, J.10
Swartzell, S.11
Weir, D.12
Hall, J.13
Dahl, T.A.14
Welti, R.15
Goo, Y.A.16
Leithauser, B.17
Keller, K.18
Cruz, R.19
Danson, M.J.20
Hough, D.W.21
Maddocks, D.G.22
Jablonski, P.E.23
Krebs, M.P.24
Angevine, C.M.25
Dale, H.26
Isenbarger, T.A.27
Peck, R.F.28
Pohlschroder, M.29
Spudich, J.L.30
Jung, K.-H.31
Alam, M.32
Freitas, T.33
Hou, S.34
Daniels, C.J.35
Dennis, P.P.36
Omer, A.D.37
Ebhardt, H.38
Lowe, T.M.39
Liang, P.40
Riley, M.41
Hood, L.42
Dassarma, S.43
more..
-
21
-
-
42949153686
-
Life at high salt concentrations
-
M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (Eds.), New York: Springer
-
Oren A (2006) Life at high salt concentrations. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds) The prokaryotes. A handbook on the biology of bacteria: ecophysiology and biochemistry, vol 2. Springer, New York, pp 263-282.
-
(2006)
The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology and Biochemistry
, vol.2
, pp. 263-282
-
-
Oren, A.1
-
22
-
-
23944462637
-
How to be moderately halophilic with a broad salt tolerance: clues from the genome of Chromohalobacter salexigens
-
Oren A, Larimer F, Richardson P, Lapidus A, Csonka LN (2005) How to be moderately halophilic with a broad salt tolerance: clues from the genome of Chromohalobacter salexigens. Extremophiles 9: 275-279.
-
(2005)
Extremophiles
, vol.9
, pp. 275-279
-
-
Oren, A.1
Larimer, F.2
Richardson, P.3
Lapidus, A.4
Csonka, L.N.5
-
23
-
-
0014716593
-
On the composition and nature of the bulk protein of extremely halophilic bacteria
-
Reistad R (1970) On the composition and nature of the bulk protein of extremely halophilic bacteria. Arch Mikrobiol 71: 353-360.
-
(1970)
Arch Mikrobiol
, vol.71
, pp. 353-360
-
-
Reistad, R.1
-
24
-
-
77956238024
-
Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea
-
Rhodes ME, Fitz-Gibbon S, Oren A, House CH (2010) Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea. Environ Microbiol 12: 2613-2623.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2613-2623
-
-
Rhodes, M.E.1
Fitz-Gibbon, S.2
Oren, A.3
House, C.H.4
-
25
-
-
33947238287
-
The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, Thorpe J, Freeman J, Andrews-Pfannkoch C, Venter JE, Li K, Kravitz S, Heidelberg JF, Utterback T, Rogers Y-H, Falcón LI, Souza V, Bonilla-Rosso G, Eguiarte LE, Karl DM, Sathyendranath S, Platt T, Bermingham E, Gallardo V, Tamayo-Castillo G, Ferrari MR, Strausberg RL, Nealson K, Friedman R, Frazier M, Venter JC (2007) The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
Beeson, K.11
Tran, B.12
Smith, H.13
Baden-Tillson, H.14
Stewart, C.15
Thorpe, J.16
Freeman, J.17
Andrews-Pfannkoch, C.18
Venter, J.E.19
Li, K.20
Kravitz, S.21
Heidelberg, J.F.22
Utterback, T.23
Rogers, Y.-H.24
Falcón, L.I.25
Souza, V.26
Bonilla-Rosso, G.27
Eguiarte, L.E.28
Karl, D.M.29
Sathyendranath, S.30
Platt, T.31
Bermingham, E.32
Gallardo, V.33
Tamayo-Castillo, G.34
Ferrari, M.R.35
Strausberg, R.L.36
Nealson, K.37
Friedman, R.38
Frazier, M.39
Venter, J.C.40
more..
-
26
-
-
79952810798
-
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas DSM 2581
-
Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk H-P, Pfeiffer F, Oesterhelt D, Kunte HJ (2011) A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas DSM 2581. Environ Microbiol 13: 1973-1994.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1973-1994
-
-
Schwibbert, K.1
Marin-Sanguino, A.2
Bagyan, I.3
Heidrich, G.4
Lentzen, G.5
Seitz, H.6
Rampp, M.7
Schuster, S.C.8
Klenk, H.-P.9
Pfeiffer, F.10
Oesterhelt, D.11
Kunte, H.J.12
-
27
-
-
79960397181
-
Complete genome sequence of the anaerobic, halophilic alkalithermophilic Natranaerobius thermophilus
-
Zhao B, Mesbah NM, Dalin E, Goodwin L, Nolan M, Pitluck S, Chertkov O, Brettin TS, Han J, Larimer FW, Land ML, Hauser L, Kyrpides N, Wiegel J (2011) Complete genome sequence of the anaerobic, halophilic alkalithermophilic Natranaerobius thermophilus. J Bacteriol 193: 4023-4024.
-
(2011)
J Bacteriol
, vol.193
, pp. 4023-4024
-
-
Zhao, B.1
Mesbah, N.M.2
Dalin, E.3
Goodwin, L.4
Nolan, M.5
Pitluck, S.6
Chertkov, O.7
Brettin, T.S.8
Han, J.9
Larimer, F.W.10
Land, M.L.11
Hauser, L.12
Kyrpides, N.13
Wiegel, J.14
|