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Volumn 14, Issue 1, 2013, Pages

Genome sequence of Xanthomonas fuscans subsp. Fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

(33)  Darrasse, Armelle a,b   Carrère, Sébastien c   Barbe, Valérie d   Boureau, Tristan a,b   Arrieta Ortiz, Mario L e,l   Bonneau, Sophie a,b   Briand, Martial a,b   Brin, Chrystelle a,b   Cociancich, Stéphane f   Durand, Karine a,b   Fouteau, Stéphanie d   Gagnevin, Lionel g,h   Guérin, Fabien g,h   Guy, Endrick c   Indiana, Arnaud a,b   Koebnik, Ralf i   Lauber, Emmanuelle c   Munoz, Alejandra e   Noël, Laurent D c   Pieretti, Isabelle f   more..

f CIRAD   (France)

Author keywords

Bean; Chemotaxis; Effector; Insertion sequence; Pseudogene; Secretion system; Seed borne pathogen

Indexed keywords

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOFILM; BIOSYNTHESIS; CHEMOTAXIS; CONTROLLED STUDY; FLAGELLUM; GENE DELETION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; NONHUMAN; PHYLOGENY; PREDICTION; STRESS; XANTHOMONAS; XANTHOMONAS FUSCANS;

EID: 84887343997     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-761     Document Type: Article
Times cited : (56)

References (166)
  • 1
    • 0002180234 scopus 로고
    • The hosts of Xanthomonas
    • London, United Kingdom: Chapman & Hall, Swings JG, Civerolo EL
    • Hayward AC. The hosts of Xanthomonas. Xanthomonas 1993, 1-119. London, United Kingdom: Chapman & Hall, Swings JG, Civerolo EL.
    • (1993) Xanthomonas , pp. 1-119
    • Hayward, A.C.1
  • 2
    • 0034086832 scopus 로고    scopus 로고
    • Synopsis on the taxonomy of the genus Xanthomonas
    • 10.1094/PHYTO.2000.90.7.677, 18944485
    • Vauterin L, Rademaker J, Swings J. Synopsis on the taxonomy of the genus Xanthomonas. Phytopathology 2000, 90:677-682. 10.1094/PHYTO.2000.90.7.677, 18944485.
    • (2000) Phytopathology , vol.90 , pp. 677-682
    • Vauterin, L.1    Rademaker, J.2    Swings, J.3
  • 4
    • 0000296003 scopus 로고
    • International standards for naming pathovars of phytopathogenic and a list of pathovar names and pathotype strains
    • Dye DW, Bradbury JF, Goto M, Hayward AC, Lelliott RA, Schroth MN. International standards for naming pathovars of phytopathogenic and a list of pathovar names and pathotype strains. Rev Plant Pathol 1980, 59:153-168.
    • (1980) Rev Plant Pathol , vol.59 , pp. 153-168
    • Dye, D.W.1    Bradbury, J.F.2    Goto, M.3    Hayward, A.C.4    Lelliott, R.A.5    Schroth, M.N.6
  • 6
    • 6244228415 scopus 로고
    • Xanthomonas campestris pv. phaseoli: cause of common bacterial blight of bean
    • London, United Kingdom: Chapman & Hall, Swings JG, Civerolo EL
    • Vidaver AK. Xanthomonas campestris pv. phaseoli: cause of common bacterial blight of bean. Xanthomonas 1993, 40-44. London, United Kingdom: Chapman & Hall, Swings JG, Civerolo EL.
    • (1993) Xanthomonas , pp. 40-44
    • Vidaver, A.K.1
  • 7
    • 0037353554 scopus 로고    scopus 로고
    • Update on legume utilization legumes: importance and constraints to greater Use
    • 10.1104/pp.017004, 1540286, 12644639
    • Graham PH, Vance CP. Update on legume utilization legumes: importance and constraints to greater Use. Plant Physiol 2003, 131:872-877. 10.1104/pp.017004, 1540286, 12644639.
    • (2003) Plant Physiol , vol.131 , pp. 872-877
    • Graham, P.H.1    Vance, C.P.2
  • 8
    • 0032860054 scopus 로고    scopus 로고
    • Phaseolus (fabaceae) in archaeology: AMS
    • Kaplan L, Lynch TF. Phaseolus (fabaceae) in archaeology: AMS. Econ Bot 1999, 53:261-272.
    • (1999) Econ Bot , vol.53 , pp. 261-272
    • Kaplan, L.1    Lynch, T.F.2
  • 9
    • 0032412238 scopus 로고    scopus 로고
    • Origin and evolution of common bean: past events and recent trends
    • Gepts P. Origin and evolution of common bean: past events and recent trends. Hortscience 1998, 33:1124-1130.
    • (1998) Hortscience , vol.33 , pp. 1124-1130
    • Gepts, P.1
  • 10
    • 0344178070 scopus 로고    scopus 로고
    • Resistance to common bacterial blight among phaseolus species and common bean improvement
    • Singh SP, Munoz CG. Resistance to common bacterial blight among phaseolus species and common bean improvement. Crop Sci 1999, 39:80-89.
    • (1999) Crop Sci , vol.39 , pp. 80-89
    • Singh, S.P.1    Munoz, C.G.2
  • 11
    • 33644985145 scopus 로고    scopus 로고
    • Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding
    • Miklas PN, Kelly JD, Beebe SE, Blair MW. Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding. Euphytica 2006, 147:105-131.
    • (2006) Euphytica , vol.147 , pp. 105-131
    • Miklas, P.N.1    Kelly, J.D.2    Beebe, S.E.3    Blair, M.W.4
  • 12
    • 0000030922 scopus 로고
    • Colonization and distribution of Xanthomonas phaseoli and Xanthomonas phaseoli var. fuscans in field-grown navy beans
    • Weller DM, Saettler AW. Colonization and distribution of Xanthomonas phaseoli and Xanthomonas phaseoli var. fuscans in field-grown navy beans. Phytopathology 1980, 70:500-506.
    • (1980) Phytopathology , vol.70 , pp. 500-506
    • Weller, D.M.1    Saettler, A.W.2
  • 13
    • 17444387830 scopus 로고    scopus 로고
    • Xanthomonas axonopodis pv. Phaseoli var. Fuscans Is aggregated in stable Biofilm population sizes in the phyllosphere of Field-grown beans
    • 10.1128/AEM.71.4.2008-2015.2005, 1082538, 15812033
    • Jacques M, Josi K, Darrasse A, Samson R. Xanthomonas axonopodis pv. Phaseoli var. Fuscans Is aggregated in stable Biofilm population sizes in the phyllosphere of Field-grown beans. Appl Environ Microbiol 2005, 71:2008-2015. 10.1128/AEM.71.4.2008-2015.2005, 1082538, 15812033.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2008-2015
    • Jacques, M.1    Josi, K.2    Darrasse, A.3    Samson, R.4
  • 14
    • 34548513992 scopus 로고    scopus 로고
    • Contamination of bean seeds by Xanthomonas axonopodis pv. phaseoli associated with low bacterial densities in the phyllosphere under field and greenhouse conditions
    • Darrasse A, Bureau C, Samson R, Morris C, Jacques M-A. Contamination of bean seeds by Xanthomonas axonopodis pv. phaseoli associated with low bacterial densities in the phyllosphere under field and greenhouse conditions. Eur J Plant Pathol 2007, 119:203-215.
    • (2007) Eur J Plant Pathol , vol.119 , pp. 203-215
    • Darrasse, A.1    Bureau, C.2    Samson, R.3    Morris, C.4    Jacques, M.-A.5
  • 15
    • 75749134874 scopus 로고    scopus 로고
    • Regulation and secretion of Xanthomonas virulence factors
    • 10.1111/j.1574-6976.2009.00192.x, 19925633
    • Büttner D, Bonas U. Regulation and secretion of Xanthomonas virulence factors. FEMS Microbiol Rev 2010, 34:107-133. 10.1111/j.1574-6976.2009.00192.x, 19925633.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 107-133
    • Büttner, D.1    Bonas, U.2
  • 16
    • 66449127078 scopus 로고    scopus 로고
    • Adhesion and fitness in the bean phyllosphere and transmission to seed of Xanthomonas fuscans subsp. fuscans
    • 10.1094/MPMI-22-6-0747, 19445599
    • Darsonval A, Darrasse A, Durand K, Bureau C, Cesbron S, Jacques M-A. Adhesion and fitness in the bean phyllosphere and transmission to seed of Xanthomonas fuscans subsp. fuscans. Mol Plant Microbe Interact 2009, 22:747-757. 10.1094/MPMI-22-6-0747, 19445599.
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 747-757
    • Darsonval, A.1    Darrasse, A.2    Durand, K.3    Bureau, C.4    Cesbron, S.5    Jacques, M.-A.6
  • 17
    • 43049141849 scopus 로고    scopus 로고
    • Type III secretion system of Xanthomonas fuscans subsp. fuscans is involved in the phyllosphere colonization process and in transmission to seeds of susceptible beans
    • 10.1128/AEM.02906-07, 2394892, 18326683
    • Darsonval A, Darrasse A, Meyer D, Demarty M, Durand K, Bureau C, Manceau C, Jacques M-A. Type III secretion system of Xanthomonas fuscans subsp. fuscans is involved in the phyllosphere colonization process and in transmission to seeds of susceptible beans. Appl Environ Microbiol 2008, 74:2669-2678. 10.1128/AEM.02906-07, 2394892, 18326683.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2669-2678
    • Darsonval, A.1    Darrasse, A.2    Meyer, D.3    Demarty, M.4    Durand, K.5    Bureau, C.6    Manceau, C.7    Jacques, M.-A.8
  • 18
    • 69949188053 scopus 로고    scopus 로고
    • A « repertoire for repertoire » hypothesis : repertoires of type three effectors are candidate determinants of host specificity in xanthomonas
    • 10.1371/journal.pone.0006632, 2722093, 19680562
    • Hajri A, Brin C, Hunault G, Lardeux F, Lemaire C, Manceau C, Boureau T, Poussier S. A « repertoire for repertoire » hypothesis : repertoires of type three effectors are candidate determinants of host specificity in xanthomonas. PLoS One 2009, 4(8):E6632. 10.1371/journal.pone.0006632, 2722093, 19680562.
    • (2009) PLoS One , vol.4 , Issue.8
    • Hajri, A.1    Brin, C.2    Hunault, G.3    Lardeux, F.4    Lemaire, C.5    Manceau, C.6    Boureau, T.7    Poussier, S.8
  • 19
    • 0041477604 scopus 로고
    • Water stress in leaves of Phaseolus vulgaris infected with Xanthomonas campestris pv. phaseoli
    • Goodwin PH, Sopher CR. Water stress in leaves of Phaseolus vulgaris infected with Xanthomonas campestris pv. phaseoli. J Phytopathol 1994, 140:219-226.
    • (1994) J Phytopathol , vol.140 , pp. 219-226
    • Goodwin, P.H.1    Sopher, C.R.2
  • 20
    • 0031416983 scopus 로고    scopus 로고
    • RAPD PCR-based differentiation of Xanthomonas campestris pv. phaseoli and Xanthomonas campestris pv. phaseoli var. fuscans
    • Birch PRJ, Hyman LJ, Taylor R, Opio AF, Bragard C, Toth IK. RAPD PCR-based differentiation of Xanthomonas campestris pv. phaseoli and Xanthomonas campestris pv. phaseoli var. fuscans. Eur J Plant Pathol 1997, 103:809-814.
    • (1997) Eur J Plant Pathol , vol.103 , pp. 809-814
    • Birch, P.R.J.1    Hyman, L.J.2    Taylor, R.3    Opio, A.F.4    Bragard, C.5    Toth, I.K.6
  • 21
    • 0031685934 scopus 로고    scopus 로고
    • PCR-based detection of Xanthomonas campestris pv. phaseoli var. fuscans in plant material and its differentiation from X. c. pv. phaseoli
    • Toth IK, Hyman LJ, Taylor R, Birch PRJ. PCR-based detection of Xanthomonas campestris pv. phaseoli var. fuscans in plant material and its differentiation from X. c. pv. phaseoli. J Appl Microbiol 1998, 85:327-336.
    • (1998) J Appl Microbiol , vol.85 , pp. 327-336
    • Toth, I.K.1    Hyman, L.J.2    Taylor, R.3    Birch, P.R.J.4
  • 22
    • 0036281170 scopus 로고    scopus 로고
    • Distribution and severity of bacterial diseases on Dry beans (phaseolus vulgaris L.) in south africa
    • Fourie D. Distribution and severity of bacterial diseases on Dry beans (phaseolus vulgaris L.) in south africa. J Phytopathol 2002, 150:220-226.
    • (2002) J Phytopathol , vol.150 , pp. 220-226
    • Fourie, D.1
  • 24
    • 2542437051 scopus 로고    scopus 로고
    • Genetic diversity and pathogenic variation of common blight bacteria (Xanthomonas campestris pv. phaseoli and X. campestris pv. phaseoli var. fuscans) suggests pathogen coevolution with the common bean
    • 10.1094/PHYTO.2004.94.6.593, 18943484
    • Mkandawire ABC, Mabagala RB, Guzman P, Gepts P, Gilbertson RL. Genetic diversity and pathogenic variation of common blight bacteria (Xanthomonas campestris pv. phaseoli and X. campestris pv. phaseoli var. fuscans) suggests pathogen coevolution with the common bean. Phytopathology 2004, 94:593-603. 10.1094/PHYTO.2004.94.6.593, 18943484.
    • (2004) Phytopathology , vol.94 , pp. 593-603
    • Mkandawire, A.B.C.1    Mabagala, R.B.2    Guzman, P.3    Gepts, P.4    Gilbertson, R.L.5
  • 25
    • 44249090672 scopus 로고    scopus 로고
    • Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations
    • 10.1128/AEM.02507-07, 2394934, 18359831
    • Alavi SM, Sanjari S, Durand F, Brin C, Manceau C, Poussier S. Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations. Appl Environ Microbiol 2008, 74:3295-3301. 10.1128/AEM.02507-07, 2394934, 18359831.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3295-3301
    • Alavi, S.M.1    Sanjari, S.2    Durand, F.3    Brin, C.4    Manceau, C.5    Poussier, S.6
  • 29
    • 7144239661 scopus 로고
    • The bacterial diseases of bean: a comparative study
    • N. Y: Agric. Exp. Stn
    • Burkholder WH. The bacterial diseases of bean: a comparative study. 1930; Ithaca 1930, 88. N. Y: Agric. Exp. Stn.
    • (1930) 1930; Ithaca , pp. 88
    • Burkholder, W.H.1
  • 31
    • 33644749576 scopus 로고    scopus 로고
    • The arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception
    • 10.1105/tpc.105.036574, 1356552, 16377758
    • Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. The arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell 2006, 18:465-476. 10.1105/tpc.105.036574, 1356552, 16377758.
    • (2006) Plant Cell , vol.18 , pp. 465-476
    • Chinchilla, D.1    Bauer, Z.2    Regenass, M.3    Boller, T.4    Felix, G.5
  • 32
    • 84865067193 scopus 로고    scopus 로고
    • Dissecting Phaseolus vulgaris innate immune system against Colletotrichum lindemuthianum infection
    • 10.1371/journal.pone.0043161, 3422333, 22912818
    • Oblessuc PR, Borges A, Chowdhury B, Caldas DGG, Tsai SM, Camargo LEA, Melotto M. Dissecting Phaseolus vulgaris innate immune system against Colletotrichum lindemuthianum infection. PLoS One 2012, 7:e43161. 10.1371/journal.pone.0043161, 3422333, 22912818.
    • (2012) PLoS One , vol.7
    • Oblessuc, P.R.1    Borges, A.2    Chowdhury, B.3    Caldas, D.G.G.4    Tsai, S.M.5    Camargo, L.E.A.6    Melotto, M.7
  • 34
    • 75449104484 scopus 로고    scopus 로고
    • The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
    • 10.1186/1471-2164-10-616, 2810307, 20017926
    • Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Cociancich S, Couloux A, Darrasse A, Gouzy J, Jacques M-A, et al. The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics 2009, 10:616. 10.1186/1471-2164-10-616, 2810307, 20017926.
    • (2009) BMC Genomics , vol.10 , pp. 616
    • Pieretti, I.1    Royer, M.2    Barbe, V.3    Carrere, S.4    Koebnik, R.5    Cociancich, S.6    Couloux, A.7    Darrasse, A.8    Gouzy, J.9    Jacques, M.-A.10
  • 35
    • 0027133165 scopus 로고
    • Functions of the gene products of Escherichia coli
    • 372942, 7508076
    • Riley M. Functions of the gene products of Escherichia coli. Microbiol Rev 1993, 57:862-952. 372942, 7508076.
    • (1993) Microbiol Rev , vol.57 , pp. 862-952
    • Riley, M.1
  • 37
    • 84856571322 scopus 로고    scopus 로고
    • PGAP : pan-genomes analysis pipeline
    • 10.1093/bioinformatics/btr655, 3268234, 22130594
    • Zhao Y, Wu J, Yang J, Sun S, Xiao J, Yu J. PGAP : pan-genomes analysis pipeline. Bioinformatics 2012, 28:416-418. 10.1093/bioinformatics/btr655, 3268234, 22130594.
    • (2012) Bioinformatics , vol.28 , pp. 416-418
    • Zhao, Y.1    Wu, J.2    Yang, J.3    Sun, S.4    Xiao, J.5    Yu, J.6
  • 38
    • 57049118038 scopus 로고    scopus 로고
    • Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas
    • 10.1371/journal.pone.0003828, 2585010, 19043590
    • Lu H, Patil P, Van Sluys M-A, White FF, Ryan RP, Dow JM, Rabinowicz P, Salzberg SL, Leach JE, Sonti R, et al. Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas. PLoS One 2008, 3:e3828. 10.1371/journal.pone.0003828, 2585010, 19043590.
    • (2008) PLoS One , vol.3
    • Lu, H.1    Patil, P.2    Van Sluys, M.-A.3    White, F.F.4    Ryan, R.P.5    Dow, J.M.6    Rabinowicz, P.7    Salzberg, S.L.8    Leach, J.E.9    Sonti, R.10
  • 39
    • 80053582792 scopus 로고    scopus 로고
    • Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
    • 10.1128/JB.05262-11, 3187462, 21784931
    • Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys M-A, Ryan RP, Meyer DF, Han S-W, et al. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J Bacteriol 2011, 193:5450-5464. 10.1128/JB.05262-11, 3187462, 21784931.
    • (2011) J Bacteriol , vol.193 , pp. 5450-5464
    • Bogdanove, A.J.1    Koebnik, R.2    Lu, H.3    Furutani, A.4    Angiuoli, S.V.5    Patil, P.B.6    Van Sluys, M.-A.7    Ryan, R.P.8    Meyer, D.F.9    Han, S.-W.10
  • 40
    • 54849378000 scopus 로고    scopus 로고
    • A multilocus sequence analysis of the genus Xanthomonas
    • 10.1016/j.syapm.2008.06.004, 18783906
    • Young JM, Park DC, Shearman H, Fargier E. A multilocus sequence analysis of the genus Xanthomonas. Syst Appl Microbiol 2008, 31:366-377. 10.1016/j.syapm.2008.06.004, 18783906.
    • (2008) Syst Appl Microbiol , vol.31 , pp. 366-377
    • Young, J.M.1    Park, D.C.2    Shearman, H.3    Fargier, E.4
  • 41
    • 80655125438 scopus 로고    scopus 로고
    • Comparative genomic analysis of xanthomonas axonopodis pv. Citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity
    • 10.1128/JB.05777-11, 3209208, 21908674
    • Jalan N, Aritua V, Kumar D, Yu F, Jones JB, Graham JH, Setubal JC, Wang N. Comparative genomic analysis of xanthomonas axonopodis pv. Citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity. J Bacteriol 2011, 193(22):6342-6357. 10.1128/JB.05777-11, 3209208, 21908674.
    • (2011) J Bacteriol , vol.193 , Issue.22 , pp. 6342-6357
    • Jalan, N.1    Aritua, V.2    Kumar, D.3    Yu, F.4    Jones, J.B.5    Graham, J.H.6    Setubal, J.C.7    Wang, N.8
  • 43
    • 77956033435 scopus 로고    scopus 로고
    • Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt
    • 10.1111/j.1574-6968.2010.02065.x, 20695894
    • Studholme D, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JD. Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt. FEMS Microbiol Lett 2010, 310(2):182-192. 10.1111/j.1574-6968.2010.02065.x, 20695894.
    • (2010) FEMS Microbiol Lett , vol.310 , Issue.2 , pp. 182-192
    • Studholme, D.1    Kemen, E.2    MacLean, D.3    Schornack, S.4    Aritua, V.5    Thwaites, R.6    Grant, M.7    Smith, J.8    Jones, J.D.9
  • 44
    • 27144440067 scopus 로고    scopus 로고
    • Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
    • 10.1128/JB.187.21.7254-7266.2005, 1272972, 16237009
    • Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, et al. Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol 2005, 187(21):7254-7266. 10.1128/JB.187.21.7254-7266.2005, 1272972, 16237009.
    • (2005) J Bacteriol , vol.187 , Issue.21 , pp. 7254-7266
    • Thieme, F.1    Koebnik, R.2    Bekel, T.3    Berger, C.4    Boch, J.5    Büttner, D.6    Caldana, C.7    Gaigalat, L.8    Goesmann, A.9    Kay, S.10
  • 48
    • 0037310805 scopus 로고    scopus 로고
    • Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
    • 10.1128/JB.185.3.1018-1026.2003, 142809, 12533478
    • Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, Takita MA, Lemos EG, et al. Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. J Bacteriol 2003, 185(3):1018-1026. 10.1128/JB.185.3.1018-1026.2003, 142809, 12533478.
    • (2003) J Bacteriol , vol.185 , Issue.3 , pp. 1018-1026
    • Van Sluys, M.A.1    de Oliveira, M.C.2    Monteiro-Vitorello, C.B.3    Miyaki, C.Y.4    Furlan, L.R.5    Camargo, L.E.6    da Silva, A.C.7    Moon, D.H.8    Takita, M.A.9    Lemos, E.G.10
  • 49
    • 84858006569 scopus 로고    scopus 로고
    • Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera
    • 10.1007/s00248-011-9948-y, 3324989, 22031452
    • Lukjancenko O, Ussery DW, Wassenaar TM. Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera. Microb Ecol 2012, 63:651-673. 10.1007/s00248-011-9948-y, 3324989, 22031452.
    • (2012) Microb Ecol , vol.63 , pp. 651-673
    • Lukjancenko, O.1    Ussery, D.W.2    Wassenaar, T.M.3
  • 50
    • 84862827081 scopus 로고    scopus 로고
    • Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association
    • 10.1186/1471-2164-13-89, 3337245, 22409516
    • Bannantine J, Wu C-W, Hsu C, Zhou S, Schwartz DC, Bayles DO, Paustian ML, Alt DP, Sreevatsan S, Kapur V, et al. Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association. BMC Genomics 2012, 13:89. 10.1186/1471-2164-13-89, 3337245, 22409516.
    • (2012) BMC Genomics , vol.13 , pp. 89
    • Bannantine, J.1    Wu, C.-W.2    Hsu, C.3    Zhou, S.4    Schwartz, D.C.5    Bayles, D.O.6    Paustian, M.L.7    Alt, D.P.8    Sreevatsan, S.9    Kapur, V.10
  • 51
    • 79960944810 scopus 로고    scopus 로고
    • Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates
    • 10.1371/journal.ppat.1002132, 3136466, 21799664
    • Baltrus D, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, Cherkis K, Roach J, Grant SR, Jones CD, Dangl JL. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog 2011, 7:e1002132. 10.1371/journal.ppat.1002132, 3136466, 21799664.
    • (2011) PLoS Pathog , vol.7
    • Baltrus, D.1    Nishimura, M.T.2    Romanchuk, A.3    Chang, J.H.4    Mukhtar, M.S.5    Cherkis, K.6    Roach, J.7    Grant, S.R.8    Jones, C.D.9    Dangl, J.L.10
  • 53
    • 84861967744 scopus 로고    scopus 로고
    • Metabolically versatile large-genome prokaryotes
    • Guieysse B, Wuertz S. Metabolically versatile large-genome prokaryotes. Curr Opin Biotechnol 2011, 23:1-7.
    • (2011) Curr Opin Biotechnol , vol.23 , pp. 1-7
    • Guieysse, B.1    Wuertz, S.2
  • 54
    • 0029186306 scopus 로고
    • The secret life of foliar bacterial pathogens on leaves
    • 10.1146/annurev.py.33.090195.001045, 18294082
    • Beattie GA, Lindow SE. The secret life of foliar bacterial pathogens on leaves. Annu Rev Phytopathol 1995, 33:145-172. 10.1146/annurev.py.33.090195.001045, 18294082.
    • (1995) Annu Rev Phytopathol , vol.33 , pp. 145-172
    • Beattie, G.A.1    Lindow, S.E.2
  • 55
    • 84869208686 scopus 로고    scopus 로고
    • Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
    • 10.1186/1471-2164-13-658, 3542200, 23171051
    • Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Couloux A, Darrasse A, Gouzy J, Jacques M-A, Lauber E, et al. Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels. BMC Genomics 2012, 13:658. 10.1186/1471-2164-13-658, 3542200, 23171051.
    • (2012) BMC Genomics , vol.13 , pp. 658
    • Pieretti, I.1    Royer, M.2    Barbe, V.3    Carrere, S.4    Koebnik, R.5    Couloux, A.6    Darrasse, A.7    Gouzy, J.8    Jacques, M.-A.9    Lauber, E.10
  • 56
    • 2642554922 scopus 로고    scopus 로고
    • Bacterial signal transduction network in a genomic perspective
    • 10.1111/j.1462-2920.2004.00633.x, 1414778, 15142243
    • Galperin MY. Bacterial signal transduction network in a genomic perspective. Environ Microbiol 2004, 6:552-567. 10.1111/j.1462-2920.2004.00633.x, 1414778, 15142243.
    • (2004) Environ Microbiol , vol.6 , pp. 552-567
    • Galperin, M.Y.1
  • 57
    • 23944523895 scopus 로고    scopus 로고
    • A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts
    • 10.1186/1471-2180-5-35, 1183210, 15955239
    • Galperin MY. A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts. BMC Microbiol 2005, 5:35. 10.1186/1471-2180-5-35, 1183210, 15955239.
    • (2005) BMC Microbiol , vol.5 , pp. 35
    • Galperin, M.Y.1
  • 58
    • 38349168381 scopus 로고    scopus 로고
    • Two-component signal transduction systems of xanthomonas spp.: a lesson from genomics
    • Qian W, Han Z-J, He C. Two-component signal transduction systems of xanthomonas spp.: a lesson from genomics. Mol Plante-Microbe Interact 2008, 21:151-161.
    • (2008) Mol Plante-Microbe Interact , vol.21 , pp. 151-161
    • Qian, W.1    Han, Z.-J.2    He, C.3
  • 59
    • 77955042462 scopus 로고    scopus 로고
    • From complete genome sequence to ' complete ' understanding ?
    • 10.1016/j.tibtech.2010.05.006, 3065831, 20647113
    • Galperin MY, Koonin EV. From complete genome sequence to ' complete ' understanding ?. Trends Biotechnol 2010, 28:398-406. 10.1016/j.tibtech.2010.05.006, 3065831, 20647113.
    • (2010) Trends Biotechnol , vol.28 , pp. 398-406
    • Galperin, M.Y.1    Koonin, E.V.2
  • 60
    • 0035019043 scopus 로고    scopus 로고
    • Genomic analysis of the histidine kinase family in bacteria and archaea
    • Kim D-J, Forst S. Genomic analysis of the histidine kinase family in bacteria and archaea. Microbiology 2001, 147:1197-1212.
    • (2001) Microbiology , vol.147 , pp. 1197-1212
    • Kim, D.-J.1    Forst, S.2
  • 61
    • 41949117894 scopus 로고    scopus 로고
    • Type IV pili: paradoxes in form and function
    • Craig L, Li J. Type IV pili: paradoxes in form and function. Curr Opin Struc Biol 2008, 18:267-277.
    • (2008) Curr Opin Struc Biol , vol.18 , pp. 267-277
    • Craig, L.1    Li, J.2
  • 62
    • 84870705958 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa twitching motility: type IV pili in action
    • 10.1146/annurev-micro-092611-150055, 22746331
    • Burrows LL. Pseudomonas aeruginosa twitching motility: type IV pili in action. Annu Rev Microbiol 2012, 66:493-520. 10.1146/annurev-micro-092611-150055, 22746331.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 493-520
    • Burrows, L.L.1
  • 63
    • 84859885138 scopus 로고    scopus 로고
    • The type II secretion system: biogenesis, molecular architecture and mechanism
    • 3705712, 22466878
    • Korotkov KV, Sandkvist M, Hol WGJ. The type II secretion system: biogenesis, molecular architecture and mechanism. Nat Rev Microbiol 2012, 10:336-351. 3705712, 22466878.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 336-351
    • Korotkov, K.V.1    Sandkvist, M.2    Hol, W.G.J.3
  • 64
    • 23644461217 scopus 로고    scopus 로고
    • Upstream migration of Xylella fastidiosa via pilus-driven twitching motility
    • 10.1128/JB.187.16.5560-5567.2005, 1196070, 16077100
    • Meng Y, Li Y, Galvani CD, Hao G, Turner JN, Burr TJ, Hoch HC. Upstream migration of Xylella fastidiosa via pilus-driven twitching motility. J Bacteriol 2005, 187:5560-5567. 10.1128/JB.187.16.5560-5567.2005, 1196070, 16077100.
    • (2005) J Bacteriol , vol.187 , pp. 5560-5567
    • Meng, Y.1    Li, Y.2    Galvani, C.D.3    Hao, G.4    Turner, J.N.5    Burr, T.J.6    Hoch, H.C.7
  • 65
    • 45249091492 scopus 로고    scopus 로고
    • Functional analysis of pilQ gene in Xanthomanas oryzae pv. oryzae, bacterial blight pathogen of rice
    • 10.1007/s12275-007-0173-9, 18545972
    • Lim SM, So B-H, Wang J, Song ES, Park Y-J, Lee B-M, Kang H-W. Functional analysis of pilQ gene in Xanthomanas oryzae pv. oryzae, bacterial blight pathogen of rice. J Microbiol 2008, 46:214-220. 10.1007/s12275-007-0173-9, 18545972.
    • (2008) J Microbiol , vol.46 , pp. 214-220
    • Lim, S.M.1    So, B.-H.2    Wang, J.3    Song, E.S.4    Park, Y.-J.5    Lee, B.-M.6    Kang, H.-W.7
  • 66
    • 70350211420 scopus 로고    scopus 로고
    • Structural biology of the chaperone-usher pathway of pilus biogenesis
    • Waksman G, Hultgren SJ. Structural biology of the chaperone-usher pathway of pilus biogenesis. Nat Rev Micro 2009, 7:765-774.
    • (2009) Nat Rev Micro , vol.7 , pp. 765-774
    • Waksman, G.1    Hultgren, S.J.2
  • 67
    • 68749097113 scopus 로고    scopus 로고
    • Outer membrane translocation: numerical protein secretion nomenclature in question in mycobacteria
    • 10.1016/j.tim.2009.05.008, 19674902
    • Desvaux M, Hébraud M, Talon R, Henderson IR. Outer membrane translocation: numerical protein secretion nomenclature in question in mycobacteria. Trends Microbiol 2009, 17:338-340. 10.1016/j.tim.2009.05.008, 19674902.
    • (2009) Trends Microbiol , vol.17 , pp. 338-340
    • Desvaux, M.1    Hébraud, M.2    Talon, R.3    Henderson, I.R.4
  • 68
    • 35848952765 scopus 로고    scopus 로고
    • Protein secretion in gram-negative bacteria via the autotransporter pathway
    • 10.1146/annurev.micro.61.080706.093233, 17506669
    • Dautin N, Bernstein HD. Protein secretion in gram-negative bacteria via the autotransporter pathway. Annu Rev Microbiol 2007, 61:89-112. 10.1146/annurev.micro.61.080706.093233, 17506669.
    • (2007) Annu Rev Microbiol , vol.61 , pp. 89-112
    • Dautin, N.1    Bernstein, H.D.2
  • 69
    • 18044363515 scopus 로고    scopus 로고
    • Trimeric autotransporters: a distinct subfamily of autotransporter proteins
    • 10.1016/j.tim.2005.03.004, 15866036
    • Cotter SE, Surana NK, St Geme JW. Trimeric autotransporters: a distinct subfamily of autotransporter proteins. Trends Microbiol 2005, 13:199-205. 10.1016/j.tim.2005.03.004, 15866036.
    • (2005) Trends Microbiol , vol.13 , pp. 199-205
    • Cotter, S.E.1    Surana, N.K.2    St Geme, J.W.3
  • 70
    • 33744728321 scopus 로고    scopus 로고
    • Trimeric autotransporter adhesins: variable structure, common function
    • 10.1016/j.tim.2006.04.005, 16678419
    • Linke D, Riess T, Autenrieth IB, Lupas A, Kempf VAJ. Trimeric autotransporter adhesins: variable structure, common function. Trends Microbiol 2006, 14:264-270. 10.1016/j.tim.2006.04.005, 16678419.
    • (2006) Trends Microbiol , vol.14 , pp. 264-270
    • Linke, D.1    Riess, T.2    Autenrieth, I.B.3    Lupas, A.4    Kempf, V.A.J.5
  • 71
    • 33749994939 scopus 로고    scopus 로고
    • Topology and maturation of filamentous haemagglutinin suggest a new model for two-partner secretion
    • 10.1111/j.1365-2958.2006.05392.x, 16999837
    • Mazar J, Cotter PA. Topology and maturation of filamentous haemagglutinin suggest a new model for two-partner secretion. Mol Microbiol 2006, 62:641-654. 10.1111/j.1365-2958.2006.05392.x, 16999837.
    • (2006) Mol Microbiol , vol.62 , pp. 641-654
    • Mazar, J.1    Cotter, P.A.2
  • 73
    • 0001312052 scopus 로고
    • Xanthan
    • London: Chapman & hall, Swings J-G, Civerolo EL
    • Sutherland IW. Xanthan. Xanthomonas 1993, 363-388. London: Chapman & hall, Swings J-G, Civerolo EL.
    • (1993) Xanthomonas , pp. 363-388
    • Sutherland, I.W.1
  • 74
    • 0034315817 scopus 로고    scopus 로고
    • Xanthan gum: production, recovery, and properties
    • 10.1016/S0734-9750(00)00050-1, 14538095
    • García-Ochoa F, Santos VE, Casas JA, Gómez E. Xanthan gum: production, recovery, and properties. Biotechnol Adv 2000, 18:549-579. 10.1016/S0734-9750(00)00050-1, 14538095.
    • (2000) Biotechnol Adv , vol.18 , pp. 549-579
    • García-Ochoa, F.1    Santos, V.E.2    Casas, J.A.3    Gómez, E.4
  • 75
    • 68649115596 scopus 로고    scopus 로고
    • Bacterial extracellular polysaccharides involved in biofilm formation
    • 10.3390/molecules14072535, 19633622
    • Vu B, Russel JC, Ivanova EP. Bacterial extracellular polysaccharides involved in biofilm formation. Molecules 2009, 14:2535-2554. 10.3390/molecules14072535, 19633622.
    • (2009) Molecules , vol.14 , pp. 2535-2554
    • Vu, B.1    Russel, J.C.2    Ivanova, E.P.3
  • 76
    • 84980197948 scopus 로고
    • Multiplication of Xanthomonas campestris pvs secalis and translucens in host and non-host plants (rye and barley) and development of water soaking
    • El-Banoby FE, Rudolph KWE. Multiplication of Xanthomonas campestris pvs secalis and translucens in host and non-host plants (rye and barley) and development of water soaking. EPPO Bull 1989, 19:105-111.
    • (1989) EPPO Bull , vol.19 , pp. 105-111
    • El-Banoby, F.E.1    Rudolph, K.W.E.2
  • 77
    • 38249005809 scopus 로고
    • Physiological changes in rice seedlings induced by extracellular polysaccharide produced by Xanthomonas campestris pv. oryzae
    • Vidhyasekaran P, Alvenda ME, Mew TW. Physiological changes in rice seedlings induced by extracellular polysaccharide produced by Xanthomonas campestris pv. oryzae. Physiol Mol Plant Pathol 1989, 35:391-402.
    • (1989) Physiol Mol Plant Pathol , vol.35 , pp. 391-402
    • Vidhyasekaran, P.1    Alvenda, M.E.2    Mew, T.W.3
  • 78
    • 34547098011 scopus 로고    scopus 로고
    • Xanthan is not essential for pathogenicity in citrus canker but contributes to Xanthomonas epiphytic survival
    • 10.1007/s00203-007-0227-8, 17356870
    • Dunger G, Relling VM, Tondo ML, Barreras M, Ielpi L, Orellano EG, Ottado J. Xanthan is not essential for pathogenicity in citrus canker but contributes to Xanthomonas epiphytic survival. Arch Microbiol 2007, 188:127-135. 10.1007/s00203-007-0227-8, 17356870.
    • (2007) Arch Microbiol , vol.188 , pp. 127-135
    • Dunger, G.1    Relling, V.M.2    Tondo, M.L.3    Barreras, M.4    Ielpi, L.5    Orellano, E.G.6    Ottado, J.7
  • 81
    • 33845626172 scopus 로고    scopus 로고
    • Transcriptional analysis of the gum gene cluster from Xanthomonas oryzae pathovar oryzae
    • Yoon K-H, Cho J-Y. Transcriptional analysis of the gum gene cluster from Xanthomonas oryzae pathovar oryzae. Biotechnol Lett 2007, 29:95-103.
    • (2007) Biotechnol Lett , vol.29 , pp. 95-103
    • Yoon, K.-H.1    Cho, J.-Y.2
  • 82
    • 0026590706 scopus 로고
    • Genetics of xanthan production in xanthomonas campestris: the xanA and xanB genes Are involved in UDP-glucose and GDP-mannose biosynthesis
    • 205695, 1370280
    • Köplin R, Arnold W, Hotte B, Simon R, Wang GE, Puhler A. Genetics of xanthan production in xanthomonas campestris: the xanA and xanB genes Are involved in UDP-glucose and GDP-mannose biosynthesis. J Bacteriol 1992, 174:191-199. 205695, 1370280.
    • (1992) J Bacteriol , vol.174 , pp. 191-199
    • Köplin, R.1    Arnold, W.2    Hotte, B.3    Simon, R.4    Wang, G.E.5    Puhler, A.6
  • 83
    • 78650045953 scopus 로고    scopus 로고
    • Quorum sensing modulation of a putative glycosyltransferase gene cluster essential for Xanthomonas campestris biofilm formation
    • 10.1111/j.1462-2920.2010.02288.x, 20636376
    • Tao F, Swarup S, L-h Z, Biology C. Quorum sensing modulation of a putative glycosyltransferase gene cluster essential for Xanthomonas campestris biofilm formation. Environ Microbiol 2010, 12:3159-3170. 10.1111/j.1462-2920.2010.02288.x, 20636376.
    • (2010) Environ Microbiol , vol.12 , pp. 3159-3170
    • Tao, F.1    Swarup, S.2    L-h, Z.3    Biology, C.4
  • 84
    • 1942443593 scopus 로고    scopus 로고
    • The pgaABCD locus of escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation
    • Wang X, Iii JFP, Romeo T. The pgaABCD locus of escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation. J Appl Microbiol 2004, 186:2724-2734.
    • (2004) J Appl Microbiol , vol.186 , pp. 2724-2734
    • Wang, X.1    Iii, J.F.P.2    Romeo, T.3
  • 85
    • 43449104220 scopus 로고    scopus 로고
    • Insights into Yersinia pestis biofilm development: topology and co-interaction of Hms inner membrane proteins involved in exopolysaccharide production
    • 10.1111/j.1462-2920.2007.01554.x, 18279344
    • Bobrov AG, Kirillina O, Forman S, Mack D, Perry RD. Insights into Yersinia pestis biofilm development: topology and co-interaction of Hms inner membrane proteins involved in exopolysaccharide production. Environ Microbiol 2008, 10:1419-1432. 10.1111/j.1462-2920.2007.01554.x, 18279344.
    • (2008) Environ Microbiol , vol.10 , pp. 1419-1432
    • Bobrov, A.G.1    Kirillina, O.2    Forman, S.3    Mack, D.4    Perry, R.D.5
  • 86
    • 0035997382 scopus 로고    scopus 로고
    • Lipopolysaccharide endotoxins
    • 10.1146/annurev.biochem.71.110601.135414, 2569852, 12045108
    • Raetz CRH, Whitfield C. Lipopolysaccharide endotoxins. Annu Rev Biochem 2002, 71:635-700. 10.1146/annurev.biochem.71.110601.135414, 2569852, 12045108.
    • (2002) Annu Rev Biochem , vol.71 , pp. 635-700
    • Raetz, C.R.H.1    Whitfield, C.2
  • 87
    • 67649289353 scopus 로고    scopus 로고
    • The lipopolysaccharide transport system of gram-negative bacteria
    • 10.1016/j.bbalip.2009.01.011, 19416651
    • Sperandeo P, Dehò G, Polissi A. The lipopolysaccharide transport system of gram-negative bacteria. Biochim Biophys Acta 2009, 1791:594-602. 10.1016/j.bbalip.2009.01.011, 19416651.
    • (2009) Biochim Biophys Acta , vol.1791 , pp. 594-602
    • Sperandeo, P.1    Dehò, G.2    Polissi, A.3
  • 88
    • 0030609152 scopus 로고    scopus 로고
    • Xanthomonas campestris pv. Campestris lpsI and lpsJ genes encoding putative proteins with sequence similarity to the α- and -subunits of 3-oxoacid CoA-transferases are involved in LPS biosynthesis
    • 10.1007/s002030050520, 9385134
    • Steinmann D, Köplin R, Pühler A, Niehaus K. Xanthomonas campestris pv. Campestris lpsI and lpsJ genes encoding putative proteins with sequence similarity to the α- and -subunits of 3-oxoacid CoA-transferases are involved in LPS biosynthesis. Arch Microbiol 1997, 168:441-447. 10.1007/s002030050520, 9385134.
    • (1997) Arch Microbiol , vol.168 , pp. 441-447
    • Steinmann, D.1    Köplin, R.2    Pühler, A.3    Niehaus, K.4
  • 89
    • 34548605458 scopus 로고    scopus 로고
    • Lipid a modification systems in gram-negative bacteria
    • 10.1146/annurev.biochem.76.010307.145803, 2569861, 17362200
    • Raetz CRH, Reynolds CM, Trent MS, Bishop RE. Lipid a modification systems in gram-negative bacteria. Annu Rev Biochem 2007, 76:295-329. 10.1146/annurev.biochem.76.010307.145803, 2569861, 17362200.
    • (2007) Annu Rev Biochem , vol.76 , pp. 295-329
    • Raetz, C.R.H.1    Reynolds, C.M.2    Trent, M.S.3    Bishop, R.E.4
  • 90
    • 39049094525 scopus 로고    scopus 로고
    • The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers
    • 10.1186/1471-2148-7-243, 2238763, 18053269
    • Patil PB, Bogdanove AJ, Sonti RV. The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers. BMC Evol Biol 2007, 7:243. 10.1186/1471-2148-7-243, 2238763, 18053269.
    • (2007) BMC Evol Biol , vol.7 , pp. 243
    • Patil, P.B.1    Bogdanove, A.J.2    Sonti, R.V.3
  • 92
    • 28844503096 scopus 로고    scopus 로고
    • ExbBD-dependent transport of maltodextrins through the novel MalA protein across the outer membrane of caulobacter crescentus
    • 10.1128/JB.187.24.8300-8311.2005, 1317028, 16321934
    • Neugebauer H, Herrmann C, Kammer W, Schwarz G, Nordheim A, Braun V. ExbBD-dependent transport of maltodextrins through the novel MalA protein across the outer membrane of caulobacter crescentus. J Bacteriol 2005, 187:8300-8311. 10.1128/JB.187.24.8300-8311.2005, 1317028, 16321934.
    • (2005) J Bacteriol , vol.187 , pp. 8300-8311
    • Neugebauer, H.1    Herrmann, C.2    Kammer, W.3    Schwarz, G.4    Nordheim, A.5    Braun, V.6
  • 93
    • 45649085030 scopus 로고    scopus 로고
    • Plant carbohydrate scavenging through TonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria
    • 10.1371/journal.pone.0000224, 1790865, 17311090
    • Blanvillain S, Meyer D, Boulanger A, Lautier M, Guynet C, Denancé N, Vasse J, Lauber E, Arlat M. Plant carbohydrate scavenging through TonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria. PLoS One 2007, 2(2):e224. 10.1371/journal.pone.0000224, 1790865, 17311090.
    • (2007) PLoS One , vol.2 , Issue.2
    • Blanvillain, S.1    Meyer, D.2    Boulanger, A.3    Lautier, M.4    Guynet, C.5    Denancé, N.6    Vasse, J.7    Lauber, E.8    Arlat, M.9
  • 94
    • 48149089820 scopus 로고    scopus 로고
    • NagA-dependent uptake of N-acetyl-glucosamine and N-acetyl-chitin oligosaccharides across the outer membrane of caulobacter crescentus
    • 10.1128/JB.00194-08, 2493260, 18539735
    • Eisenbeis S, Lohmiller S, Valdebenito M, Leicht S, Braun V. NagA-dependent uptake of N-acetyl-glucosamine and N-acetyl-chitin oligosaccharides across the outer membrane of caulobacter crescentus. J Bacteriol 2008, 190:5230-5238. 10.1128/JB.00194-08, 2493260, 18539735.
    • (2008) J Bacteriol , vol.190 , pp. 5230-5238
    • Eisenbeis, S.1    Lohmiller, S.2    Valdebenito, M.3    Leicht, S.4    Braun, V.5
  • 95
    • 46149094595 scopus 로고    scopus 로고
    • New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?
    • 10.1016/j.tibs.2008.04.012, 18539464
    • Schauer K, Rodionov D, de Reuse H. New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?. Trends Biochem Sci 2008, 33:330-338. 10.1016/j.tibs.2008.04.012, 18539464.
    • (2008) Trends Biochem Sci , vol.33 , pp. 330-338
    • Schauer, K.1    Rodionov, D.2    de Reuse, H.3
  • 96
    • 77956505672 scopus 로고    scopus 로고
    • TonB-dependent transporters: regulation, structure, and function
    • 10.1146/annurev.micro.112408.134247, 3108441, 20420522
    • Noinaj N, Guillier M, Barnard TJ, Buchanan SK. TonB-dependent transporters: regulation, structure, and function. Annu Rev Microbiol 2010, 64:43-60. 10.1146/annurev.micro.112408.134247, 3108441, 20420522.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 43-60
    • Noinaj, N.1    Guillier, M.2    Barnard, T.J.3    Buchanan, S.K.4
  • 97
    • 77949381799 scopus 로고    scopus 로고
    • Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium xanthomonas campestris pv. Campestris
    • 10.1128/JB.01418-09, 2832512, 20081036
    • Boulanger A, Déjean G, Lautier M, Glories M, Zischek C, Arlat M, Lauber E. Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium xanthomonas campestris pv. Campestris. J Bacteriol 2010, 192:1487-1497. 10.1128/JB.01418-09, 2832512, 20081036.
    • (2010) J Bacteriol , vol.192 , pp. 1487-1497
    • Boulanger, A.1    Déjean, G.2    Lautier, M.3    Glories, M.4    Zischek, C.5    Arlat, M.6    Lauber, E.7
  • 99
    • 78249278151 scopus 로고    scopus 로고
    • Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris
    • 10.4161/viru.1.5.12704, 21178479
    • Ryan RP, Dow JM. Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris. Virulence 2010, 1:404-408. 10.4161/viru.1.5.12704, 21178479.
    • (2010) Virulence , vol.1 , pp. 404-408
    • Ryan, R.P.1    Dow, J.M.2
  • 100
    • 60249091268 scopus 로고    scopus 로고
    • Xanthomonas campestris overcomes Arabidopsis stomatal innate immunity through a DSF cell-to-cell signal-regulated virulence factor
    • 2633826, 19091877
    • Gudesblat GE, Torres PS, Vojnov AA. Xanthomonas campestris overcomes Arabidopsis stomatal innate immunity through a DSF cell-to-cell signal-regulated virulence factor. Plant Physiol 2009, 149:1017-1027. 2633826, 19091877.
    • (2009) Plant Physiol , vol.149 , pp. 1017-1027
    • Gudesblat, G.E.1    Torres, P.S.2    Vojnov, A.A.3
  • 101
    • 33845403359 scopus 로고    scopus 로고
    • Mechanisms of cyclic-di-GMP signaling in bacteria
    • 10.1146/annurev.genet.40.110405.090423, 16895465
    • Jenal U, Malone J. Mechanisms of cyclic-di-GMP signaling in bacteria. Annu Rev Genet 2006, 40:385-407. 10.1146/annurev.genet.40.110405.090423, 16895465.
    • (2006) Annu Rev Genet , vol.40 , pp. 385-407
    • Jenal, U.1    Malone, J.2
  • 102
    • 33646249963 scopus 로고    scopus 로고
    • Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
    • 10.1073/pnas.0600345103, 1458946, 16611728
    • Ryan RP, Fouhy Y, Lucey JF, Crossman LC, Spiro S, He Y-W, Zhang L-H, Heeb S, Cámara M, Williams P, et al. Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc Natl Acad Sci U S A 2006, 103:6712-6717. 10.1073/pnas.0600345103, 1458946, 16611728.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 6712-6717
    • Ryan, R.P.1    Fouhy, Y.2    Lucey, J.F.3    Crossman, L.C.4    Spiro, S.5    He, Y.-W.6    Zhang, L.-H.7    Heeb, S.8    Cámara, M.9    Williams, P.10
  • 103
    • 0025869929 scopus 로고
    • Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris
    • Tang JL, Liu YN, Barber CE, Dow JM, Wootton JC, Daniels MJ. Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris. Mol Gen Genet 1991, 226:409-417.
    • (1991) Mol Gen Genet , vol.226 , pp. 409-417
    • Tang, J.L.1    Liu, Y.N.2    Barber, C.E.3    Dow, J.M.4    Wootton, J.C.5    Daniels, M.J.6
  • 104
    • 54949155990 scopus 로고    scopus 로고
    • Cell-to-cell signaling in Xylella fastidiosa suppresses movement and xylem vessel colonization in grape
    • Chatterjee S, Newman KL, Lindow SE. Cell-to-cell signaling in Xylella fastidiosa suppresses movement and xylem vessel colonization in grape. Mol Plante-Microbe Interact 2008, 21:1309-1315.
    • (2008) Mol Plante-Microbe Interact , vol.21 , pp. 1309-1315
    • Chatterjee, S.1    Newman, K.L.2    Lindow, S.E.3
  • 105
    • 69949148947 scopus 로고    scopus 로고
    • Virulence reduction and differing regulation of virulence genes in rpf mutants of Xanthomonas oryzae pv. oryzae
    • Jeong KS, Lee SE, Han JW, Yang SU, Lee BM, Noh TH, Cha JS. Virulence reduction and differing regulation of virulence genes in rpf mutants of Xanthomonas oryzae pv. oryzae. Plant Pathol J 2008, 24:143-151.
    • (2008) Plant Pathol J , vol.24 , pp. 143-151
    • Jeong, K.S.1    Lee, S.E.2    Han, J.W.3    Yang, S.U.4    Lee, B.M.5    Noh, T.H.6    Cha, J.S.7
  • 106
    • 0031027099 scopus 로고    scopus 로고
    • PigB determines a diffusible factor needed for extracellular polysaccharide slime and xanthomonadin production in Xanthomonas campestris pv. campestris
    • 178714, 8990296
    • Poplawsky AR, Chun W. pigB determines a diffusible factor needed for extracellular polysaccharide slime and xanthomonadin production in Xanthomonas campestris pv. campestris. J Bacteriol 1997, 179:439-444. 178714, 8990296.
    • (1997) J Bacteriol , vol.179 , pp. 439-444
    • Poplawsky, A.R.1    Chun, W.2
  • 107
    • 79960478096 scopus 로고    scopus 로고
    • Xanthomonas campestris diffusible factor is 3-hydroxybenzoic acid and is associated with xanthomonadin biosynthesis, cell viability, antioxidant activity, and systemic invasion
    • 10.1094/MPMI-02-11-0031, 21539432
    • He Y-W, Wu J, Zhou L, Yang F, He Y-Q, Jiang B-L, Bai L, Xu Y, Deng Z, Tang J-L, et al. Xanthomonas campestris diffusible factor is 3-hydroxybenzoic acid and is associated with xanthomonadin biosynthesis, cell viability, antioxidant activity, and systemic invasion. Mol Plant Microbe Interact 2011, 24:948-957. 10.1094/MPMI-02-11-0031, 21539432.
    • (2011) Mol Plant Microbe Interact , vol.24 , pp. 948-957
    • He, Y.-W.1    Wu, J.2    Zhou, L.3    Yang, F.4    He, Y.-Q.5    Jiang, B.-L.6    Bai, L.7    Xu, Y.8    Deng, Z.9    Tang, J.-L.10
  • 108
    • 33749162329 scopus 로고    scopus 로고
    • A gene for a dioxygenase-like protein determines the production of the DF signal in Xanthomonas campestris pv. campestris
    • 10.1111/j.1364-3703.2005.00307.x, 20565687
    • Poplawsky AR, Walters DM, Rouviere PE, Chun W. A gene for a dioxygenase-like protein determines the production of the DF signal in Xanthomonas campestris pv. campestris. Mol Plant Pathol 2005, 6:653-657. 10.1111/j.1364-3703.2005.00307.x, 20565687.
    • (2005) Mol Plant Pathol , vol.6 , pp. 653-657
    • Poplawsky, A.R.1    Walters, D.M.2    Rouviere, P.E.3    Chun, W.4
  • 109
    • 0036286250 scopus 로고    scopus 로고
    • Genetic locus encoding functions involved in biosynthesis and outer membrane localization of xanthomonadin in xanthomonas oryzae pv. Oryzae
    • 10.1128/JB.184.13.3539-3548.2002, 135150, 12057948
    • Goel AK, Rajagopal L, Nagesh N, Sonti RV. Genetic locus encoding functions involved in biosynthesis and outer membrane localization of xanthomonadin in xanthomonas oryzae pv. Oryzae. J Bacteriol 2002, 184:3539-3548. 10.1128/JB.184.13.3539-3548.2002, 135150, 12057948.
    • (2002) J Bacteriol , vol.184 , pp. 3539-3548
    • Goel, A.K.1    Rajagopal, L.2    Nagesh, N.3    Sonti, R.V.4
  • 110
    • 84871410714 scopus 로고    scopus 로고
    • The diffusible factor synthase XanB2 is a bifunctional chorismatase that links the shikimate pathway to ubiquinone and xanthomonadins biosynthetic pathways
    • 10.1111/mmi.12084, 23113660
    • Zhou L, Wang J-Y, Wang J, Poplawsky A, Lin S, Zhu B, Chang C, Zhou T, Zhang L-H, He Y-W. The diffusible factor synthase XanB2 is a bifunctional chorismatase that links the shikimate pathway to ubiquinone and xanthomonadins biosynthetic pathways. Mol Microbiol 2013, 87:80-93. 10.1111/mmi.12084, 23113660.
    • (2013) Mol Microbiol , vol.87 , pp. 80-93
    • Zhou, L.1    Wang, J.-Y.2    Wang, J.3    Poplawsky, A.4    Lin, S.5    Zhu, B.6    Chang, C.7    Zhou, T.8    Zhang, L.-H.9    He, Y.-W.10
  • 111
    • 84862556686 scopus 로고    scopus 로고
    • Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria
    • 10.1128/MMBR.05017-11, 3372255, 22688814
    • Büttner D. Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria. Microbiol Mol Biol Rev 2012, 76:262-310. 10.1128/MMBR.05017-11, 3372255, 22688814.
    • (2012) Microbiol Mol Biol Rev , vol.76 , pp. 262-310
    • Büttner, D.1
  • 112
    • 8844241421 scopus 로고    scopus 로고
    • Type I secretion in gram-negative bacteria
    • 10.1016/j.bbamcr.2004.05.001, 15546664
    • Delepelaire P. Type I secretion in gram-negative bacteria. Biochim Biophys Acta 2004, 1694:149-161. 10.1016/j.bbamcr.2004.05.001, 15546664.
    • (2004) Biochim Biophys Acta , vol.1694 , pp. 149-161
    • Delepelaire, P.1
  • 113
    • 77955296461 scopus 로고    scopus 로고
    • Multiple signals direct the assembly and function of a type 1 secretion system
    • 10.1128/JB.00178-10, 2916380, 20418390
    • Masi M, Wandersman C. Multiple signals direct the assembly and function of a type 1 secretion system. J Bacteriol 2010, 192:3861-3869. 10.1128/JB.00178-10, 2916380, 20418390.
    • (2010) J Bacteriol , vol.192 , pp. 3861-3869
    • Masi, M.1    Wandersman, C.2
  • 116
    • 1642506329 scopus 로고    scopus 로고
    • The phytoalexin-inducible multidrug efflux pump AcrAB contributes to virulence in the fire blight pathogen, Erwinia amylovora
    • 10.1094/MPMI.2004.17.1.43, 14714867
    • Burse A, Weingart H, Ullrich MS. The phytoalexin-inducible multidrug efflux pump AcrAB contributes to virulence in the fire blight pathogen, Erwinia amylovora. Mol Plant Microbe Interact 2004, 17:43-54. 10.1094/MPMI.2004.17.1.43, 14714867.
    • (2004) Mol Plant Microbe Interact , vol.17 , pp. 43-54
    • Burse, A.1    Weingart, H.2    Ullrich, M.S.3
  • 117
    • 34248143835 scopus 로고    scopus 로고
    • Two host-induced Ralstonia solanacearum genes, acrA and dinF, encode multidrug efflux pumps and contribute to bacterial wilt virulence
    • 10.1128/AEM.00984-06, 1892870, 17337552
    • Brown DG, Swanson JK, Allen C. Two host-induced Ralstonia solanacearum genes, acrA and dinF, encode multidrug efflux pumps and contribute to bacterial wilt virulence. Appl Environ Microbiol 2007, 73:2777-2786. 10.1128/AEM.00984-06, 1892870, 17337552.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2777-2786
    • Brown, D.G.1    Swanson, J.K.2    Allen, C.3
  • 118
    • 0031777833 scopus 로고    scopus 로고
    • An isoflavonoid-inducible efflux pump in agrobacterium tumefaciens is involved in competitive colonization of roots
    • 107810, 9620959
    • Palumbo JD, Kado CI, Phillips DA. An isoflavonoid-inducible efflux pump in agrobacterium tumefaciens is involved in competitive colonization of roots. J Bacteriol 1998, 180:3107-3113. 107810, 9620959.
    • (1998) J Bacteriol , vol.180 , pp. 3107-3113
    • Palumbo, J.D.1    Kado, C.I.2    Phillips, D.A.3
  • 119
    • 42249097293 scopus 로고    scopus 로고
    • Bacterial Multidrug Efflux Pumps Serve Other Functions
    • Poole K. Bacterial Multidrug Efflux Pumps Serve Other Functions. Microbe 2008, 3:179-185.
    • (2008) Microbe , vol.3 , pp. 179-185
    • Poole, K.1
  • 120
    • 64649085938 scopus 로고    scopus 로고
    • Multidrug efflux transporters in the MATE family
    • 10.1016/j.bbapap.2008.11.012, 19100867
    • Kuroda T, Tsuchiya T. Multidrug efflux transporters in the MATE family. Biochim Biophys Acta 2009, 1794:763-768. 10.1016/j.bbapap.2008.11.012, 19100867.
    • (2009) Biochim Biophys Acta , vol.1794 , pp. 763-768
    • Kuroda, T.1    Tsuchiya, T.2
  • 121
    • 35348908966 scopus 로고    scopus 로고
    • Bacterial protein secretion through the translocase nanomachine
    • 10.1038/nrmicro1771, 17938627
    • Papanikou E, Karamanou S, Economou A. Bacterial protein secretion through the translocase nanomachine. Nat Rev Microbiol 2007, 5:839-851. 10.1038/nrmicro1771, 17938627.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 839-851
    • Papanikou, E.1    Karamanou, S.2    Economou, A.3
  • 122
    • 71449116162 scopus 로고    scopus 로고
    • Biological diversity of prokaryotic type IV secretion systems
    • 2786583, 19946141
    • Alvarez-Martinez CE, Christie PJ. Biological diversity of prokaryotic type IV secretion systems. Microbiol Mol Biol Rev 2009, 73:775-808. 2786583, 19946141.
    • (2009) Microbiol Mol Biol Rev , vol.73 , pp. 775-808
    • Alvarez-Martinez, C.E.1    Christie, P.J.2
  • 123
    • 70349277187 scopus 로고    scopus 로고
    • The structural biology of type IV secretion systems
    • Fronzes R, Christie PJ, Waksman G. The structural biology of type IV secretion systems. Nat Rev Micro 2009, 7:703-714.
    • (2009) Nat Rev Micro , vol.7 , pp. 703-714
    • Fronzes, R.1    Christie, P.J.2    Waksman, G.3
  • 124
    • 84875875453 scopus 로고    scopus 로고
    • Evolution of conjugation and type IV secretion systems
    • 3548315, 22977114
    • Guglielmini J, de la Cruz F, Rocha EPC. Evolution of conjugation and type IV secretion systems. Mol Biol Evol 2012, 30:315-331. 3548315, 22977114.
    • (2012) Mol Biol Evol , vol.30 , pp. 315-331
    • Guglielmini, J.1    de la Cruz, F.2    Rocha, E.P.C.3
  • 125
    • 15144362149 scopus 로고    scopus 로고
    • Identification of New protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen xanthomonas axonopodis pv. Citri
    • 10.1128/JB.187.7.2315-2325.2005, 1065226, 15774874
    • Alegria MC, Souza DP, Andrade MO, Docena C, Khater L, Ramos CHI, Ana C, Silva R, Farah CS, Silva ACR. Identification of New protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen xanthomonas axonopodis pv. Citri. J Bacteriol 2005, 187:2315-2325. 10.1128/JB.187.7.2315-2325.2005, 1065226, 15774874.
    • (2005) J Bacteriol , vol.187 , pp. 2315-2325
    • Alegria, M.C.1    Souza, D.P.2    Andrade, M.O.3    Docena, C.4    Khater, L.5    Ramos, C.H.I.6    Ana, C.7    Silva, R.8    Farah, C.S.9    Silva, A.C.R.10
  • 126
    • 79958062185 scopus 로고    scopus 로고
    • A component of the xanthomonadaceae type IV secretion system combines a VirB7 motif with a N0 domain found in outer membrane transport proteins
    • 10.1371/journal.ppat.1002031, 3093366, 21589901
    • Souza DP, Andrade MO, Alvarez-martinez CE, Arantes GM, Chuck S, Salinas RK. A component of the xanthomonadaceae type IV secretion system combines a VirB7 motif with a N0 domain found in outer membrane transport proteins. PLoS Pathog 2011, 7:e1002031. 10.1371/journal.ppat.1002031, 3093366, 21589901.
    • (2011) PLoS Pathog , vol.7
    • Souza, D.P.1    Andrade, M.O.2    Alvarez-martinez, C.E.3    Arantes, G.M.4    Chuck, S.5    Salinas, R.K.6
  • 128
    • 84867899841 scopus 로고    scopus 로고
    • Structure and regulation of the type VI secretion system
    • 10.1146/annurev-micro-121809-151619, 3595004, 22746332
    • Silverman JM, Brunet YR, Cascales E, Mougous JD. Structure and regulation of the type VI secretion system. Annu Rev Microbiol 2012, 66:453-472. 10.1146/annurev-micro-121809-151619, 3595004, 22746332.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 453-472
    • Silverman, J.M.1    Brunet, Y.R.2    Cascales, E.3    Mougous, J.D.4
  • 129
    • 77955765267 scopus 로고    scopus 로고
    • Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria
    • 10.1111/j.1469-8137.2010.03312.x, 20524995
    • Szczesny R, Jordan M, Schramm C, Schulz S, Cogez V, Bonas U, Büttner D. Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria. New Phytol 2010, 187:983-1002. 10.1111/j.1469-8137.2010.03312.x, 20524995.
    • (2010) New Phytol , vol.187 , pp. 983-1002
    • Szczesny, R.1    Jordan, M.2    Schramm, C.3    Schulz, S.4    Cogez, V.5    Bonas, U.6    Büttner, D.7
  • 130
    • 4744368323 scopus 로고    scopus 로고
    • Carbohydrate-binding modules: fine-tuning polysaccharide recognition
    • 10.1042/BJ20040892, 1133952, 15214846
    • Boraston AB, Bolam DN, Gilbert HJ, Davies GJ. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J 2004, 382:769-781. 10.1042/BJ20040892, 1133952, 15214846.
    • (2004) Biochem J , vol.382 , pp. 769-781
    • Boraston, A.B.1    Bolam, D.N.2    Gilbert, H.J.3    Davies, G.J.4
  • 131
    • 33750474845 scopus 로고    scopus 로고
    • Terminal reassortment drives the quantum evolution of type III effectors in bacterial pathogens
    • 10.1371/journal.ppat.0020104, 1599762, 17040127
    • Stavrinides J, Ma W, Guttman DS. Terminal reassortment drives the quantum evolution of type III effectors in bacterial pathogens. PLoS Pathog 2006, 2:e104. 10.1371/journal.ppat.0020104, 1599762, 17040127.
    • (2006) PLoS Pathog , vol.2
    • Stavrinides, J.1    Ma, W.2    Guttman, D.S.3
  • 132
    • 0029411773 scopus 로고
    • Sequence and expression analysis of the hrpB pathogenicity operon of Xanthomonas campestris pv. campestris which encodes eight proteins with similarity to components of the Hrp, Ysc, Spa, and Fli secretion systems
    • 10.1094/MPMI-8-0845, 8664494
    • Fenselau S, Bonas U. Sequence and expression analysis of the hrpB pathogenicity operon of Xanthomonas campestris pv. campestris which encodes eight proteins with similarity to components of the Hrp, Ysc, Spa, and Fli secretion systems. Mol Plant Microbe Interact 1995, 8:845-854. 10.1094/MPMI-8-0845, 8664494.
    • (1995) Mol Plant Microbe Interact , vol.8 , pp. 845-854
    • Fenselau, S.1    Bonas, U.2
  • 133
    • 1842558993 scopus 로고    scopus 로고
    • Characterization of the cis-acting regulatory element controlling HrpB-mediated activation of the type III secretion system and effector genes in Ralstonia solanacearum
    • 10.1128/JB.186.8.2309-2318.2004, 412162, 15060033
    • Cunac S, Boucher C, Genin S. Characterization of the cis-acting regulatory element controlling HrpB-mediated activation of the type III secretion system and effector genes in Ralstonia solanacearum. J Bacteriol 2004, 186:2309-2318. 10.1128/JB.186.8.2309-2318.2004, 412162, 15060033.
    • (2004) J Bacteriol , vol.186 , pp. 2309-2318
    • Cunac, S.1    Boucher, C.2    Genin, S.3
  • 134
    • 33750481907 scopus 로고    scopus 로고
    • Specific binding of the xanthomonas campestris pv. Vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes
    • 10.1128/JB.00795-06, 1636286, 16936021
    • Koebnik R, Krüger A, Thieme F, Urban A, Bonas U. Specific binding of the xanthomonas campestris pv. Vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes. J Bacteriol 2006, 188:7652-7660. 10.1128/JB.00795-06, 1636286, 16936021.
    • (2006) J Bacteriol , vol.188 , pp. 7652-7660
    • Koebnik, R.1    Krüger, A.2    Thieme, F.3    Urban, A.4    Bonas, U.5
  • 135
    • 84858400338 scopus 로고    scopus 로고
    • Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
    • 10.1093/nar/gkr904, 3300014, 22080557
    • Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J, Stadler PF, Bonas U. Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucl Acids Res 2012, 40:2020-2031. 10.1093/nar/gkr904, 3300014, 22080557.
    • (2012) Nucl Acids Res , vol.40 , pp. 2020-2031
    • Schmidtke, C.1    Findeiss, S.2    Sharma, C.M.3    Kuhfuss, J.4    Hoffmann, S.5    Vogel, J.6    Stadler, P.F.7    Bonas, U.8
  • 136
    • 84876890660 scopus 로고    scopus 로고
    • The role of two Pseudomonas aeruginosa anthranilate synthases in tryptophan and quorum signal production
    • 10.1099/mic.0.063065-0, 23449919
    • Palmer GC, Jorth PA, Whiteley M. The role of two Pseudomonas aeruginosa anthranilate synthases in tryptophan and quorum signal production. Microbiology 2013, 159:959-969. 10.1099/mic.0.063065-0, 23449919.
    • (2013) Microbiology , vol.159 , pp. 959-969
    • Palmer, G.C.1    Jorth, P.A.2    Whiteley, M.3
  • 137
    • 33947252171 scopus 로고    scopus 로고
    • Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria
    • 10.1128/AEM.02031-06, 1828756, 17209062
    • Alavi SM, Poussier S, Manceau C. Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria. Appl Environ Microbiol 2007, 73:1678-1682. 10.1128/AEM.02031-06, 1828756, 17209062.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1678-1682
    • Alavi, S.M.1    Poussier, S.2    Manceau, C.3
  • 140
    • 0029069734 scopus 로고
    • Characterization of an open reading frame involved in site-specific integration of filamentous phage Cf1t from xanthomonas campestris pv. Citri
    • 10.1016/0378-1119(95)00170-B, 7789813
    • Shieh G-J, Lin C-H, Kuo J-L, Kuo T-T. Characterization of an open reading frame involved in site-specific integration of filamentous phage Cf1t from xanthomonas campestris pv. Citri. Gene 1995, 158:73-76. 10.1016/0378-1119(95)00170-B, 7789813.
    • (1995) Gene , vol.158 , pp. 73-76
    • Shieh, G.-J.1    Lin, C.-H.2    Kuo, J.-L.3    Kuo, T.-T.4
  • 141
    • 22344455805 scopus 로고    scopus 로고
    • Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
    • 10.1101/gr.3378705, 1142466, 15899963
    • Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ, Tang H, et al. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res 2005, 15:757-767. 10.1101/gr.3378705, 1142466, 15899963.
    • (2005) Genome Res , vol.15 , pp. 757-767
    • Qian, W.1    Jia, Y.2    Ren, S.X.3    He, Y.Q.4    Feng, J.X.5    Lu, L.F.6    Sun, Q.7    Ying, G.8    Tang, D.J.9    Tang, H.10
  • 142
    • 33947289413 scopus 로고    scopus 로고
    • In planta horizontal transfer of a major pathogenicity effector gene
    • 10.1128/AEM.00261-06, 1828793, 17220258
    • El-Yacoubi B, Brunings AM, Yuan Q, Shankar S, Gabriel DW. In planta horizontal transfer of a major pathogenicity effector gene. Appl Environ Microbiol 2007, 73:1612-1621. 10.1128/AEM.00261-06, 1828793, 17220258.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1612-1621
    • El-Yacoubi, B.1    Brunings, A.M.2    Yuan, Q.3    Shankar, S.4    Gabriel, D.W.5
  • 143
    • 0037681624 scopus 로고    scopus 로고
    • Xanthomonas citri: breaking the surface
    • 10.1046/j.1364-3703.2003.00163.x, 20569374
    • Brunnings AM, Gabriel DW. Xanthomonas citri: breaking the surface. Mol Plant Pathol 2003, 4:141-157. 10.1046/j.1364-3703.2003.00163.x, 20569374.
    • (2003) Mol Plant Pathol , vol.4 , pp. 141-157
    • Brunnings, A.M.1    Gabriel, D.W.2
  • 144
    • 34249856320 scopus 로고    scopus 로고
    • Stepwise formation of the bacterial flagellar system
    • 10.1073/pnas.0700266104, 1852327, 17438286
    • Liu R, Ochman H. Stepwise formation of the bacterial flagellar system. Proc Natl Acad Sci U S A 2007, 104:7116-7121. 10.1073/pnas.0700266104, 1852327, 17438286.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 7116-7121
    • Liu, R.1    Ochman, H.2
  • 145
    • 0004363417 scopus 로고
    • The bacterium Xanthomonas
    • London, United Kingdom: Chapman & Hall, Swings J, Civerolo E
    • Swings J, Vauterin L, Kersters K. The bacterium Xanthomonas. Xanthomonas 1993, 121-156. London, United Kingdom: Chapman & Hall, Swings J, Civerolo E.
    • (1993) Xanthomonas , pp. 121-156
    • Swings, J.1    Vauterin, L.2    Kersters, K.3
  • 146
    • 78449269327 scopus 로고    scopus 로고
    • Plant and animal sensors of conserved microbial signatures
    • 10.1126/science.1189468, 21097929
    • Ronald PC, Beutler B. Plant and animal sensors of conserved microbial signatures. Science 2010, 330:1061-1064. 10.1126/science.1189468, 21097929.
    • (2010) Science , vol.330 , pp. 1061-1064
    • Ronald, P.C.1    Beutler, B.2
  • 147
    • 0242693166 scopus 로고    scopus 로고
    • How bacteria assemble flagella
    • 10.1146/annurev.micro.57.030502.090832, 12730325
    • Macnab RM. How bacteria assemble flagella. Annu Rev Microbiol 2003, 57:77-100. 10.1146/annurev.micro.57.030502.090832, 12730325.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 77-100
    • Macnab, R.M.1
  • 148
    • 33646595316 scopus 로고    scopus 로고
    • Chemotaxis is required for virulence and competitive fitness of the bacterial wilt pathogen ralstonia solanacearum
    • 10.1128/JB.188.10.3697-3708.2006, 1482862, 16672623
    • Yao J, Allen C. Chemotaxis is required for virulence and competitive fitness of the bacterial wilt pathogen ralstonia solanacearum. J Bacteriol 2006, 188:3697-3708. 10.1128/JB.188.10.3697-3708.2006, 1482862, 16672623.
    • (2006) J Bacteriol , vol.188 , pp. 3697-3708
    • Yao, J.1    Allen, C.2
  • 149
    • 58149165211 scopus 로고    scopus 로고
    • Bacterial chemotaxis differences in Escherichia coli isolated from different hosts
    • Dzinic SH, Luercio M, Ram JL. Bacterial chemotaxis differences in Escherichia coli isolated from different hosts. Can J Plant Pathol 2008, 54:1043-1052.
    • (2008) Can J Plant Pathol , vol.54 , pp. 1043-1052
    • Dzinic, S.H.1    Luercio, M.2    Ram, J.L.3
  • 150
    • 0036175537 scopus 로고    scopus 로고
    • Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island
    • 10.1128/JB.184.5.1340-1348.2002, 134860, 11844763
    • Noël L, Thieme F, Nennstiel D, Bonas U. Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island. J Bacteriol 2002, 184:1340-1348. 10.1128/JB.184.5.1340-1348.2002, 134860, 11844763.
    • (2002) J Bacteriol , vol.184 , pp. 1340-1348
    • Noël, L.1    Thieme, F.2    Nennstiel, D.3    Bonas, U.4
  • 151
    • 84864075483 scopus 로고    scopus 로고
    • Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting
    • 10.1371/journal.ppat.1002778, 3375312, 22719259
    • Hocquet D, Llanes C, Thouverez M, Kulasekara HD, Bertrand X, Plésiat P, Mazel D, Miller SI. Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting. PLoS Pathog 2012, 8:e1002778. 10.1371/journal.ppat.1002778, 3375312, 22719259.
    • (2012) PLoS Pathog , vol.8
    • Hocquet, D.1    Llanes, C.2    Thouverez, M.3    Kulasekara, H.D.4    Bertrand, X.5    Plésiat, P.6    Mazel, D.7    Miller, S.I.8
  • 152
    • 15444377677 scopus 로고    scopus 로고
    • Integrons in Xanthomonas: a source of species genome diversity
    • 10.1073/pnas.0406620102, 555480, 15755815
    • Gillings MR, Holley MP, Stokes HW, Holmes AJ. Integrons in Xanthomonas: a source of species genome diversity. Proc Natl Acad Sci U S A 2005, 102:4419-4424. 10.1073/pnas.0406620102, 555480, 15755815.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 4419-4424
    • Gillings, M.R.1    Holley, M.P.2    Stokes, H.W.3    Holmes, A.J.4
  • 153
    • 77957343695 scopus 로고    scopus 로고
    • The extinction dynamics of bacterial pseudogenes
    • 10.1371/journal.pgen.1001050, 2916853, 20700439
    • Kuo C-H, Ochman H. The extinction dynamics of bacterial pseudogenes. PloS Genet 2010, 6:e1001050. 10.1371/journal.pgen.1001050, 2916853, 20700439.
    • (2010) PloS Genet , vol.6
    • Kuo, C.-H.1    Ochman, H.2
  • 155
    • 0035430519 scopus 로고    scopus 로고
    • Brown pigments produced by yarrowia lipolytica result from extracellular accumulation of homogentisic acid
    • 10.1128/AEM.67.8.3463-3468.2001, 93044, 11472920
    • Carreira A, Ferreira LM, Loureiro V. Brown pigments produced by yarrowia lipolytica result from extracellular accumulation of homogentisic acid. Appl Environ Microbiol 2001, 67:3463-3468. 10.1128/AEM.67.8.3463-3468.2001, 93044, 11472920.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3463-3468
    • Carreira, A.1    Ferreira, L.M.2    Loureiro, V.3
  • 156
    • 45249095383 scopus 로고    scopus 로고
    • Insights and inferences about integron evolution from genomic data
    • 10.1186/1471-2164-9-261, 2426708, 18513439
    • Nemergut DR, Robeson MS, Kysela RF, Martin AP, Schmidt SK, Knight R. Insights and inferences about integron evolution from genomic data. BMC Genomics 2008, 9:261. 10.1186/1471-2164-9-261, 2426708, 18513439.
    • (2008) BMC Genomics , vol.9 , pp. 261
    • Nemergut, D.R.1    Robeson, M.S.2    Kysela, R.F.3    Martin, A.P.4    Schmidt, S.K.5    Knight, R.6
  • 159
    • 0043122995 scopus 로고    scopus 로고
    • FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences
    • 10.1093/nar/gkg610, 169016, 12824407
    • Schiex T, Gouzy J, Moisan A, de Oliveira Y. FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. Nucl Acids Res 2003, 31:3738-3741. 10.1093/nar/gkg610, 169016, 12824407.
    • (2003) Nucl Acids Res , vol.31 , pp. 3738-3741
    • Schiex, T.1    Gouzy, J.2    Moisan, A.3    de Oliveira, Y.4
  • 161
    • 0034570532 scopus 로고    scopus 로고
    • MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products
    • Serres MH, Riley M. MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. Microb Comp Genomics 2000, 5:205-222.
    • (2000) Microb Comp Genomics , vol.5 , pp. 205-222
    • Serres, M.H.1    Riley, M.2
  • 162
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL : identification of ortholog groups for eukaryotic genomes
    • 10.1101/gr.1224503, 403725, 12952885
    • Li L, Stoeckert CJJ, Roos DS. OrthoMCL : identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.J.2    Roos, D.S.3
  • 163
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • 10.1371/journal.pone.0011147, 2892488, 20593022
    • Darling AE, Mau B, Perna NT. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010, 5:e11147. 10.1371/journal.pone.0011147, 2892488, 20593022.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 164
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignement editor and analysis program for Windows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignement editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 165
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Sys Biol 2010, 59:307-321.
    • (2010) Sys Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 166
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121, 3203626, 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6


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