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Volumn 14, Issue SUPPL8, 2013, Pages

Diagnostic prediction of complex diseases using phase-only correlation based on virtual sample template

Author keywords

[No Author keywords available]

Indexed keywords

CLASSIFICATION METHODS; DIFFERENTIALLY EXPRESSED GENE; DISEASE CLASSIFICATION; DYNAMIC EQUILIBRIUM STATE; GENE EXPRESSION PATTERNS; PHASE-ONLY CORRELATION; RECOGNITION ACCURACY; STATE-OF-THE-ART MACHINE LEARNING METHODS;

EID: 84887177618     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-S8-S11     Document Type: Article
Times cited : (8)

References (42)
  • 1
    • 84858800896 scopus 로고    scopus 로고
    • Biomarkers: the future of medical science to detect cancer
    • 3593935, 23577310
    • Karley D, Gupta D, Tiwari A. Biomarkers: the future of medical science to detect cancer. Molecular Biomarkers & Diagnosis 2011, 2(5):118. 3593935, 23577310.
    • (2011) Molecular Biomarkers & Diagnosis , vol.2 , Issue.5 , pp. 118
    • Karley, D.1    Gupta, D.2    Tiwari, A.3
  • 3
    • 84857498641 scopus 로고    scopus 로고
    • Diagnosis of Parkinson's Disease Based on Disease-Specific Autoantibody Profiles in Human Sera
    • 3285212, 22384236
    • Han M, Nagele E, DeMarshall C, Acharya N, Nagele R. Diagnosis of Parkinson's Disease Based on Disease-Specific Autoantibody Profiles in Human Sera. PLoS One 2012, 7(2). 3285212, 22384236.
    • (2012) PLoS One , vol.7 , Issue.2
    • Han, M.1    Nagele, E.2    DeMarshall, C.3    Acharya, N.4    Nagele, R.5
  • 4
    • 79961059917 scopus 로고    scopus 로고
    • Diagnosis of Alzheimer's Disease Based on Disease-Specific Autoantibody Profiles in Human Sera
    • 3149629, 21826230
    • Nagele E, Han M, DeMarshall C, Belinka B, Nagele R. Diagnosis of Alzheimer's Disease Based on Disease-Specific Autoantibody Profiles in Human Sera. PLoS One 2011, 6(8). 3149629, 21826230.
    • (2011) PLoS One , vol.6 , Issue.8
    • Nagele, E.1    Han, M.2    DeMarshall, C.3    Belinka, B.4    Nagele, R.5
  • 5
    • 38849091390 scopus 로고    scopus 로고
    • Hybrid huberized support vector machines for microarray classification and gene selection
    • 10.1093/bioinformatics/btm579, 18175770
    • Wang L, Zhu J, Zou H. Hybrid huberized support vector machines for microarray classification and gene selection. Bioinformatics 2008, 24(3):412-419. 10.1093/bioinformatics/btm579, 18175770.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 412-419
    • Wang, L.1    Zhu, J.2    Zou, H.3
  • 7
    • 33747865502 scopus 로고    scopus 로고
    • Independent component analysis-based penalized discriminant method for tumor classification using gene expression data
    • 10.1093/bioinformatics/btl190, 16709589
    • Huang DS, Zheng CH. Independent component analysis-based penalized discriminant method for tumor classification using gene expression data. Bioinformatics 2006, 22(15):1855-1862. 10.1093/bioinformatics/btl190, 16709589.
    • (2006) Bioinformatics , vol.22 , Issue.15 , pp. 1855-1862
    • Huang, D.S.1    Zheng, C.H.2
  • 8
    • 77649237177 scopus 로고    scopus 로고
    • Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction
    • 10.1016/j.compbiomed.2009.11.014, 20044083
    • Wang SL, Li XL, Zhang SW, Gui J, Huang DS. Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction. Comput Biol Med 2010, 40(2):179-189. 10.1016/j.compbiomed.2009.11.014, 20044083.
    • (2010) Comput Biol Med , vol.40 , Issue.2 , pp. 179-189
    • Wang, S.L.1    Li, X.L.2    Zhang, S.W.3    Gui, J.4    Huang, D.S.5
  • 9
    • 2442503670 scopus 로고    scopus 로고
    • A constructive approach for finding arbitrary roots of polynomials by neural networks
    • 10.1109/TNN.2004.824424, 15384540
    • Huang DS. A constructive approach for finding arbitrary roots of polynomials by neural networks. Ieee T Neural Networ 2004, 15(2):477-491. 10.1109/TNN.2004.824424, 15384540.
    • (2004) Ieee T Neural Networ , vol.15 , Issue.2 , pp. 477-491
    • Huang, D.S.1
  • 11
    • 33845660791 scopus 로고    scopus 로고
    • A hierarchical Naive Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays
    • 1698579, 17125514
    • Demichelis F, Magni P, Piergiorgi P, Rubin MA, Bellazzi R. A hierarchical Naive Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays. Bmc Bioinformatics 2006, 7. 1698579, 17125514.
    • (2006) Bmc Bioinformatics , vol.7
    • Demichelis, F.1    Magni, P.2    Piergiorgi, P.3    Rubin, M.A.4    Bellazzi, R.5
  • 12
    • 48249110665 scopus 로고    scopus 로고
    • Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value
    • 10.1093/bioinformatics/btn262, 18544547
    • Boulesteix AL, Porzelius C, Daumer M. Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value. Bioinformatics 2008, 24(15):1698-1706. 10.1093/bioinformatics/btn262, 18544547.
    • (2008) Bioinformatics , vol.24 , Issue.15 , pp. 1698-1706
    • Boulesteix, A.L.1    Porzelius, C.2    Daumer, M.3
  • 15
    • 34548626858 scopus 로고    scopus 로고
    • A new constrained independent component analysis method
    • Huang DS, Mi JX. A new constrained independent component analysis method. IEEE T Neural Networ 2007, 18(5):1532-1535.
    • (2007) IEEE T Neural Networ , vol.18 , Issue.5 , pp. 1532-1535
    • Huang, D.S.1    Mi, J.X.2
  • 16
    • 45349093967 scopus 로고    scopus 로고
    • Cancer classification by gradient LDA technique using microarray gene expression data
    • Sharma A, Paliwal KK. Cancer classification by gradient LDA technique using microarray gene expression data. Data Knowl Eng 2008, 66(2):338-347.
    • (2008) Data Knowl Eng , vol.66 , Issue.2 , pp. 338-347
    • Sharma, A.1    Paliwal, K.K.2
  • 17
    • 77957255786 scopus 로고    scopus 로고
    • Gene expression data classification using locally linear discriminant embedding
    • 10.1016/j.compbiomed.2010.08.003, 20864095
    • Li B, Zheng CH, Huang DS, Zhang L, Han K. Gene expression data classification using locally linear discriminant embedding. Computers in Biology and Medicine 2010, 40(10):802-810. 10.1016/j.compbiomed.2010.08.003, 20864095.
    • (2010) Computers in Biology and Medicine , vol.40 , Issue.10 , pp. 802-810
    • Li, B.1    Zheng, C.H.2    Huang, D.S.3    Zhang, L.4    Han, K.5
  • 18
    • 27944493276 scopus 로고    scopus 로고
    • Classification of microarrays to nearest centroids
    • 10.1093/bioinformatics/bti681, 16174683
    • Dabney AR. Classification of microarrays to nearest centroids. Bioinformatics 2005, 21(22):4148-4154. 10.1093/bioinformatics/bti681, 16174683.
    • (2005) Bioinformatics , vol.21 , Issue.22 , pp. 4148-4154
    • Dabney, A.R.1
  • 19
    • 1942438016 scopus 로고    scopus 로고
    • Rules of evidence for cancer molecular-marker discovery and validation
    • 10.1038/nrc1322, 15057290
    • Ransohoff DF. Rules of evidence for cancer molecular-marker discovery and validation. Nature Reviews Cancer 2004, 4(4):309-314. 10.1038/nrc1322, 15057290.
    • (2004) Nature Reviews Cancer , vol.4 , Issue.4 , pp. 309-314
    • Ransohoff, D.F.1
  • 20
    • 13444283596 scopus 로고    scopus 로고
    • Bias as a threat to the validity of cancer molecular-marker research
    • 10.1038/nrc1550, 15685197
    • Ransohoff DF. Bias as a threat to the validity of cancer molecular-marker research. Nature Reviews Cancer 2005, 5(2):142-149. 10.1038/nrc1550, 15685197.
    • (2005) Nature Reviews Cancer , vol.5 , Issue.2 , pp. 142-149
    • Ransohoff, D.F.1
  • 21
    • 0037245343 scopus 로고    scopus 로고
    • Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
    • 10.1093/jnci/95.1.14, 12509396
    • Simon R, Radmacher MD, Dobbin K, McShane LM. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. Journal of the National Cancer Institute 2003, 95(1):14-18. 10.1093/jnci/95.1.14, 12509396.
    • (2003) Journal of the National Cancer Institute , vol.95 , Issue.1 , pp. 14-18
    • Simon, R.1    Radmacher, M.D.2    Dobbin, K.3    McShane, L.M.4
  • 22
    • 34447331698 scopus 로고    scopus 로고
    • Classification based upon gene expression data: bias and precision of error rates
    • 10.1093/bioinformatics/btm117, 17392326
    • Wood IA, Visscher PM, Mengersen KL. Classification based upon gene expression data: bias and precision of error rates. Bioinformatics 2007, 23(11):1363-1370. 10.1093/bioinformatics/btm117, 17392326.
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1363-1370
    • Wood, I.A.1    Visscher, P.M.2    Mengersen, K.L.3
  • 23
    • 62549163396 scopus 로고    scopus 로고
    • Papers on normalization, variable selection, classification or clustering of microarray data
    • Rocke DM, Ideker T, Troyanskaya O, Quackenbush J, Dopazo J. Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics 2009, 25(6):701-702.
    • (2009) Bioinformatics , vol.25 , Issue.6 , pp. 701-702
    • Rocke, D.M.1    Ideker, T.2    Troyanskaya, O.3    Quackenbush, J.4    Dopazo, J.5
  • 25
    • 84859741480 scopus 로고    scopus 로고
    • Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers
    • 3314989, 22461973
    • Chen LN, Liu R, Liu ZP, Li MY, Aihara K. Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers. Sci Rep-Uk 2012, 2. 3314989, 22461973.
    • (2012) Sci Rep-Uk , vol.2
    • Chen, L.N.1    Liu, R.2    Liu, Z.P.3    Li, M.Y.4    Aihara, K.5
  • 27
    • 0021387215 scopus 로고
    • Phase-Only Matched Filtering
    • 10.1364/AO.23.000812, 18204645
    • Horner JL, Gianino PD. Phase-Only Matched Filtering. Applied Optics 1984, 23(6):812-816. 10.1364/AO.23.000812, 18204645.
    • (1984) Applied Optics , vol.23 , Issue.6 , pp. 812-816
    • Horner, J.L.1    Gianino, P.D.2
  • 29
    • 42449083753 scopus 로고    scopus 로고
    • A high-accuracy stereo correspondence technique using 1D band-limited phase-only correlation
    • Shibaharaa T, Aoki T, Nakajima H, Kobayashi K. A high-accuracy stereo correspondence technique using 1D band-limited phase-only correlation. Ieice Electron Expr 2008, 5(4):125-130.
    • (2008) Ieice Electron Expr , vol.5 , Issue.4 , pp. 125-130
    • Shibaharaa, T.1    Aoki, T.2    Nakajima, H.3    Kobayashi, K.4
  • 30
    • 84857279052 scopus 로고    scopus 로고
    • Phase-only correlation of time-varying spectral representations of microseismic data for identification of similar seismic events
    • Moriya H. Phase-only correlation of time-varying spectral representations of microseismic data for identification of similar seismic events. Geophysics 2011, 76(6):Wc37-Wc45.
    • (2011) Geophysics , vol.76 , Issue.6
    • Moriya, H.1
  • 32
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • 10.1126/science.286.5439.531, 10521349
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 1999, 286(5439):531-537. 10.1126/science.286.5439.531, 10521349.
    • (1999) Science , vol.286 , Issue.5439 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6    Coller, H.7    Loh, M.L.8    Downing, J.R.9    Caligiuri, M.A.10
  • 33
    • 0034954414 scopus 로고    scopus 로고
    • Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
    • 10.1038/89044, 1282521, 11385503
    • Khan J, Wei JS, Ringner M, Saal LH, Ladanyi M, Westermann F, Berthold F, Schwab M, Antonescu CR, Peterson C, et al. Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nature Medicine 2001, 7(6):673-679. 10.1038/89044, 1282521, 11385503.
    • (2001) Nature Medicine , vol.7 , Issue.6 , pp. 673-679
    • Khan, J.1    Wei, J.S.2    Ringner, M.3    Saal, L.H.4    Ladanyi, M.5    Westermann, F.6    Berthold, F.7    Schwab, M.8    Antonescu, C.R.9    Peterson, C.10
  • 37
    • 24944441345 scopus 로고    scopus 로고
    • Rank sum method for related gene selection and its application to tumor diagnosis
    • Deng L, Ma JW, Pei J. Rank sum method for related gene selection and its application to tumor diagnosis. Chinese Science Bulletin 2004, 49(15):1652-1657.
    • (2004) Chinese Science Bulletin , vol.49 , Issue.15 , pp. 1652-1657
    • Deng, L.1    Ma, J.W.2    Pei, J.3
  • 39
    • 77958460554 scopus 로고    scopus 로고
    • Performance Comparison of Tumor Classification Based on Linear and Non-linear Dimensionality Reduction Methods
    • Wang SL, You HZ, Lei YK, Li XL. Performance Comparison of Tumor Classification Based on Linear and Non-linear Dimensionality Reduction Methods. Advanced Intelligent Computing Theories and Applications 2010, 6215:291-300.
    • (2010) Advanced Intelligent Computing Theories and Applications , vol.6215 , pp. 291-300
    • Wang, S.L.1    You, H.Z.2    Lei, Y.K.3    Li, X.L.4
  • 41
    • 33645505591 scopus 로고    scopus 로고
    • A novel normalization method for effective removal of systematic variation in microarray data
    • 1415275, 16528099
    • Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VVT, Yang H. A novel normalization method for effective removal of systematic variation in microarray data. Nucleic Acids Research 2006, 34(5). 1415275, 16528099.
    • (2006) Nucleic Acids Research , vol.34 , Issue.5
    • Chua, S.W.1    Vijayakumar, P.2    Nissom, P.M.3    Yam, C.Y.4    Wong, V.V.T.5    Yang, H.6
  • 42
    • 26944480820 scopus 로고    scopus 로고
    • Inter-gene correlation on oligonucleotide arrays - How much does normalization matter?
    • Gold DL, Wang J, Coombes KR. Inter-gene correlation on oligonucleotide arrays - How much does normalization matter?. Am J Pharmacogenomic 2005, 5(4):271-279.
    • (2005) Am J Pharmacogenomic , vol.5 , Issue.4 , pp. 271-279
    • Gold, D.L.1    Wang, J.2    Coombes, K.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.