A distinguishable role of eDNA in the viscoelastic relaxation of biofilms

mBio

Volumn 4, Issue 5, 2013, Pages

  Peterson, Brandon W ^a   van der Mei, Henny C ^a   Sjollema, Jelmer ^a   Busscher, Henk J ^a   Sharma, Prashant K ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL POLYSACCHARIDE; DNA; EXTRACELLULAR DNA; EXTRACELLULAR POLYMERIC SUBSTANCE; UNCLASSIFIED DRUG; VISCOELASTIC SUBSTANCE; WATER;

ARTICLE; BIOFILM; CONTROLLED STUDY; GENE FUNCTION; GENE INTERACTION; MECHANICAL STRESS; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS EPIDERMIDIS; STRAIN DIFFERENCE; STREPTOCOCCUS MUTANS; STRESS RELAXATION; VISCOELASTIC RELAXATION; VISCOELASTICITY;

BIOFILMS; DNA, BACTERIAL; EXTRACELLULAR MATRIX; PSEUDOMONAS AERUGINOSA; STAPHYLOCOCCUS; STREPTOCOCCUS MUTANS;

EID: 84887163709     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00497-13     Document Type: Article

References (45)

1. Goward CR, Nicholls DJ. 1994. Malate dehydrogenase: a model for structure, evolution, and catalysis. Protein Sci. 3:1883-1888.
2. Mah TF, O'Toole GA. 2001. Mechanisms of biofilm resistance to antimicrobial agents. Trends Microbiol. 9:34-39.
3. Schmid T, Burkhard J, Yeo BS, Zhang W, Zenobi R. 2008. Towards chemical analysis of nanostructures in biofilms I: imaging of biological nanostructures. Anal. Bioanal. Chem. 391:1899-1905.
4. Costerton JW, Stewart PS, Greenberg EP. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318-1322.
5. Archibald LK, Gaynes RP. 1997. Hospital-acquired infections in the United States. The importance of interhospital comparisons. Infect. Dis. Clin. North Am. 11:245-255.
6. Bowden GH, Hamilton IR. 1998. Survival of oral bacteria. Crit. Rev. Oral Biol. Med. 9:54-85.
7. Alexandridis C, Thanos CE, Caputo AA. 1981. Distribution of stress patterns in the human zygomatic arch and bone. J. Oral Rehabil. 8:495-505.
8. Sjollema J, Rustema-Abbing M, Van der Mei HC, Busscher HJ. 2011. Generalized relationship between numbers of bacteria and their viability in biofilms. Appl. Environ. Microbiol. 77:5027-5029.
9. Busscher HJ, Jager D, Finger G, Schaefer N, Van der Mei HC. 2010. Energy transfer, volumetric expansion, and removal of oral biofilms by non-contact brushing. Eur. J. Oral Sci. 118:177-182.
10. Stoodley P, Cargo R, Rupp CJ, Wilson S, Klapper I. 2002. Biofilm material properties as related to shear-induced deformation and detachment phenomena. J. Ind. Microbiol. Biotechnol. 29:361-367.
11. Branda SS, Chu F, Kearns DB, Losick R, Kolter R. 2006. A major protein component of the Bacillus subtilis biofilm matrix. Mol. Microbiol. 59: 1229-1238.
12. Flemming HC, Wingender J. 2010. The biofilm matrix. Nat. Rev. Microbiol. 8:623-633.
13. Allesen-Holm M, Barken KB, Yang L, Klausen M, Webb JS, Kjelleberg S, Molin S, Givskov M, Tolker-Nielsen T. 2006. A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms. Mol. Microbiol. 59:1114-1128.
14. Orgad O, Oren Y, Walker SL, Herzberg M. 2011. The role of alginate in Pseudomonas aeruginosa EPS adherence, viscoelastic properties and cell attachment. Biofouling 27:787-798.
15. Coulon C, Vinogradov E, Filloux A, Sadovskaya I. 2010. Chemical analysis of cellular and extracellular carbohydrates of a biofilm-forming strain Pseudomonas aeruginosa PA14. PLoS One 5:e14220. doi:10.1371/ journal.pone.0014220.
16. Gustafsson E, Jacobsson G, Nilsson P, Enroth H, Beronius MK, Andersson R, Arvidson S. 2009. Invasive Staphylococcus aureus strains are highly variable in PFGE patterns, agr group and exoprotein production. Scand. J. Infect. Dis. 41:577-583.
17. Hussain M, Herrmann M, Von Eiff C, Perdreau-Remington F, Peters G. 1997. A 140-kilodalton extracellular protein is essential for the accumulation of Staphylococcus epidermidis strains on surfaces. Infect. Immun. 65: 519-524.
18. Izano EA, Amarante MA, Kher WB, Kaplan JB. 2008. Differential roles of poly-N-acetylglucosamine surface polysaccharide and extracellular DNA in Staphylococcus aureus and Staphylococcus epidermidis biofilms. Appl. Environ. Microbiol. 74:470-476.
19. Duarte S, Klein MI, Aires CP, Cury JA, Bowen WH, Koo H. 2008. Influences of starch and sucrose on Streptococcus mutans biofilms. Oral Microbiol. Immunol. 23:206-212.
20. Klein MI, DeBaz L, Agidi S, Lee H, Xie G, Lin AH, Hamaker BR, Lemos JA, Koo H. 2010. Dynamics of Streptococcus mutans transcriptome in response to starch and sucrose during biofilm development. PLoS One 5:e13478. doi:10.1371/journal.pone.0013478.
21. Fux CA, Costerton JW, Stewart PS, Stoodley P. 2005. Survival strategies of infectious biofilms. Trends Microbiol. 13:34-40.
22. Stewart PS. 2002. Mechanisms of antibiotic resistance in bacterial biofilms. Int. J. Med. Microbiol. 292:107-113.
23. Szomolay B, Klapper I, Dockery J, Stewart PS. 2005. Adaptive responses to antimicrobial agents in biofilms. Environ. Microbiol. 7:1186-1191.
24. Shaw T, Winston M, Rupp CJ, Klapper I, Stoodley P. 2004. Commonality of elastic relaxation times in biofilms. Phys. Rev. Lett. 93:098102.
25. Cense AW, Peeters EA, Gottenbos B, Baaijens FP, Nuijs AM, Van Dongen ME. 2006. Mechanical properties and failure of Streptococcus mutans biofilms, studied using a microindentation device. J. Microbiol. Methods 67:463-472.
26. Gautieri A, Vesentini S, Redaelli A, Buehler MJ. 2012. Viscoelastic properties of model segments of collagen molecules. Matrix Biol. 31: 141-149.
27. Bausch AR, Möller W, Sackmann E. 1999. Measurement of local viscoelasticity and forces in living cells by magnetic tweezers. Biophys. J. 76:573-579.
28. Thomas VC, Thurlow LR, Boyle D, Hancock LE. 2008. Regulation of autolysis-dependent extracellular DNA release by Enterococcus faecalis extracellular proteases influences biofilm development. J. Bacteriol. 190: 5690-5698.
29. Barnes AM, Ballering KS, Leibman RS, Wells CL, Dunny GM. 2012. Enterococcus faecalis produces abundant extracellular structures containing DNA in the absence of cell lysis during early biofilm formation. mBio 3:e00193-12. doi:10.1128/mBio.00193-12.
30. Das T, Sharma PK, Busscher HJ, Van der Mei HC, Krom BP. 2010. Role of extracellular DNA in initial bacterial adhesion and surface aggregation. Appl. Environ. Microbiol. 76:3405-3408.
31. Hu W, Li L, Sharma S, Wang J, McHardy I, Lux R, Yang Z, He X, Gimzewski JK, Li Y, Shi W. 2012. DNA builds and strengthens the extracellular matrix in Myxococcus xanthus biofilms by interacting with exopolysaccharides. PLoS One 7:e51905. doi:10.1371/ journal.pone.0051905.
32. Das T, Sharma PK, Krom BP, Van der Mei HC, Busscher HJ. 2011. Role of eDNA on the adhesion forces between Streptococcus mutans and substratum surfaces: influence of ionic strength and substratum hydrophobicity. Langmuir 27:10113-10118.
33. Nielsen KM, Johnsen PJ, Bensasson D, Daffonchio D. 2007. Release and persistence of extracellular DNA in the environment. Environ. Biosafety Res. 6:37-53.
34. Helbert JR, Brown KD. 1956. Color reaction of hexuronic acids with anthrone. J. Anal. Chem. 28:1098-1100.
35. Dubois M, Gilles KA, Hamilton JK, Rebers PA, Smith F. 1956. Colorimetric method for determination of sugars and related substances. Anal. Chem. 28:350-356.
36. Chomczynski P, Sacchi N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
37. Körstgens V, Flemming HC, Wingender J, Borchard W. 2001. Uniaxial compression measurement device for investigation of the mechanical stability of biofilms. J. Microbiol. Methods 46:9-17.
38. Peterson BW, Busscher HJ, Sharma PK, Van der Mei HC. 2012. Environmental and centrifugal factors influencing the visco-elastic properties of oral biofilms in vitro. Biofouling 28:913-920.
39. Gómez-Suárez C, Pasma J, Van der Borden AJ, Wingender J, Flemming HC, Busscher HJ, Van der Mei HC. 2002. Influence of extracellular polymeric substances on deposition and redeposition of Pseudomonas aeruginosa to surfaces. Microbiology 148:1161-1169.
40. Marchese A, Bozzolasco M, Gualco L, Debbia EA, Schito GC, Schito AM. 2003. Effect of fosfomycin alone and in combination with N-acetylcysteine on E. coli biofilms. Int. J. Antimicrob. Agents 22(Suppl 2):95-100.
41. Kreth J, Zhu L, Merritt J, Shi W, Qi F. 2008. Role of sucrose in the fitness of Streptococcus mutans. Oral Microbiol. Immunol. 23:213-219.
42. Møretrø T, Hermansen L, Holck AL, Sidhu MS, Rudi K, Langsrud S. 2003. Biofilm formation and the presence of the intercellular adhesion locus ica among staphylococci from food and food processing environments. Appl. Environ. Microbiol. 69:5648-5655.
43. Rasyid HN, Van der Mei HC, Frijlink HW, Soegijoko S, Van Horn JR, Busscher HJ, Neut D. 2009. Concepts for increasing gentamicin release from handmade bone cement beads. Acta Orthop. 80:508-513.
44. Van der Mei HC, van Belt-Gritter B, Reid G, Bialkowska-Hobrzanska H, Busscher HJ. 1997. Adhesion of coagulase-negative staphylococci grouped according to physico-chemical surface properties. Microbiology 143:3861-3870.
45. Zhang YQ, Ren SX, Li HL, Wang YX, Fu G, Yang J, Qin ZQ, Miao YG, Wang WY, Chen RS, Shen Y, Chen Z, Yuan ZH, Zhao GP, Qu D, Danchin A, Wen YM. 2003. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol. Microbiol. 49:1577-1593.