-
1
-
-
34748912454
-
Tularemia: History, epidemiology, pathogen physiology, and clinical manifestations
-
DOI 10.1196/annals.1409.009, Francisella Tularensis: Biology, Pathogenicity, Epidemiology, and Biodefense
-
Sjostedt, A. (2007) Tularemia: history, epidemiology, pathogen physiology, and clinical manifestations. Ann. N. Y. Acad. Sci. 1105, 1-29. (Pubitemid 47507090)
-
(2007)
Annals of the New York Academy of Sciences
, vol.1105
, pp. 1-29
-
-
Sjostedt, A.1
-
2
-
-
0038111240
-
Family III, francisellaceae
-
(Brenner, D. J. Krieg, N. R. Staley, J. T. and Garrity, G. M. eds.), Springer, New York, NY
-
Sjostedt, A. (2005) Family III. Francisellaceae. in Bergey's Manual® of Systematic Bacteriology (Brenner, D. J., Krieg, N. R., Staley, J. T., and Garrity, G. M. eds.), Springer, New York, NY. pp 199-209.
-
(2005)
Bergey's Manual® of Systematic Bacteriology
, pp. 199-209
-
-
Sjostedt, A.1
-
3
-
-
67249166181
-
Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies
-
Champion, M. D., Zeng, Q., Nix, E. B., Nano, F. E., Keim, P., Kodira, C. D., Borowsky, M., Young, S., Koehrsen, M., Engels, R., Pearson, M., Howarth, C., Larson, L., White, J., Alvarado, L., Forsman, M., Bearden, S. W., Sjostedt, A., Titball, R., Michell, S. L., Birren, B., and Galagan, J. (2009) Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathogens 5, e1000459.
-
(2009)
PLoS Pathogens
, vol.5
-
-
Champion, M.D.1
Zeng, Q.2
Nix, E.B.3
Nano, F.E.4
Keim, P.5
Kodira, C.D.6
Borowsky, M.7
Young, S.8
Koehrsen, M.9
Engels, R.10
Pearson, M.11
Howarth, C.12
Larson, L.13
White, J.14
Alvarado, L.15
Forsman, M.16
Bearden, S.W.17
Sjostedt, A.18
Titball, R.19
Michell, S.L.20
Birren, B.21
Galagan, J.22
more..
-
4
-
-
39549114621
-
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains
-
Rohmer, L., Fong, C., Abmayr, S., Wasnick, M., Larson Freeman, T. J., Radey, M., Guina, T., Svensson, K., Hayden, H. S., Jacobs, M., Gallagher, L. A., Manoil, C., Ernst, R. K., Drees, B., Buckley, D., Haugen, E., Bovee, D., Zhou, Y., Chang, J., Levy, R., Lim, R., Gillett, W., Guenthener, D., Kang, A., Shaffer, S. A., Taylor, G., Chen, J., Gallis, B., D'Argenio, D. A., Forsman, M., Olson, M. V., Goodlett, D. R., Kaul, R., Miller, S. I., and Brittnacher, M. J. (2007) Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol. 8, R102.
-
(2007)
Genome Biol.
, vol.8
-
-
Rohmer, L.1
Fong, C.2
Abmayr, S.3
Wasnick, M.4
Larson Freeman, T.J.5
Radey, M.6
Guina, T.7
Svensson, K.8
Hayden, H.S.9
Jacobs, M.10
Gallagher, L.A.11
Manoil, C.12
Ernst, R.K.13
Drees, B.14
Buckley, D.15
Haugen, E.16
Bovee, D.17
Zhou, Y.18
Chang, J.19
Levy, R.20
Lim, R.21
Gillett, W.22
Guenthener, D.23
Kang, A.24
Shaffer, S.A.25
Taylor, G.26
Chen, J.27
Gallis, B.28
D'Argenio, D.A.29
Forsman, M.30
Olson, M.V.31
Goodlett, D.R.32
Kaul, R.33
Miller, S.I.34
Brittnacher, M.J.35
more..
-
5
-
-
33845979136
-
The immunologically distinct O antigens from Francisella tularensis subspecies tularensis and Francisella novicida are both virulence determinants and protective antigens
-
DOI 10.1128/IAI.01241-06
-
Thomas, R. M., Titball, R. W., Oyston, P. C., Griffin, K., Waters, E., Hitchen, P. G., Michell, S. L., Grice, I. D., Wilson, J. C., and Prior, J. L. (2007) The immunologically distinct O antigens from Francisella tularensis subspecies tularensis and Francisella novicida are both virulence determinants and protective antigens. Infection Immunity 75, 371-378. (Pubitemid 46047913)
-
(2007)
Infection and Immunity
, vol.75
, Issue.1
, pp. 371-378
-
-
Thomas, R.M.1
Titball, R.W.2
Oyston, P.C.F.3
Griffin, K.4
Waters, E.5
Hitchen, P.G.6
Michell, S.L.7
Grice, I.D.8
Wilson, J.C.9
Prior, J.L.10
-
6
-
-
80655125021
-
Francisella tularensis reveals a disparity between human and mouse NLRP3 inflammasome activation
-
Atianand, M. K., Duffy, E. B., Shah, A., Kar, S., Malik, M., and Harton, J. A. (2011) Francisella tularensis reveals a disparity between human and mouse NLRP3 inflammasome activation. J. Biol. Chem. 286, 39033-39042.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 39033-39042
-
-
Atianand, M.K.1
Duffy, E.B.2
Shah, A.3
Kar, S.4
Malik, M.5
Harton, J.A.6
-
7
-
-
84882416296
-
Repression of inflammasome by francisella tularensis during early stages of infection
-
Press
-
Dotson, R. J., Rabadi, S. M., Westcott, E. L., Bradley, S., Catlett, S. V., Banik, S., Harton, J. A., Bakshi, C. S., and Malik, M. (2013) Repression of inflammasome by Francisella tularensis during early stages of infection. J. Biol. Chem. in press 288, 23844-23857.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 23844-23857
-
-
Dotson, R.J.1
Rabadi, S.M.2
Westcott, E.L.3
Bradley, S.4
Catlett, S.V.5
Banik, S.6
Harton, J.A.7
Bakshi, C.S.8
Malik, M.9
-
8
-
-
4243191594
-
Mice sublethally infected with Francisella novicida U112 develop only marginal protective immunity against systemic or aerosol challenge with virulent type A or B strains of F. Tularensis
-
DOI 10.1016/j.micpath.2004.04.005, PII S0882401004000567
-
Shen, H., Chen, W., and Conlan, J. W. (2004) Mice sublethally infected with Francisella novicida U112 develop only marginal protective immunity against systemic or aerosol challenge with virulent type A or B strains of F. tularensis. Microb. Pathogenesis 37, 107-110. (Pubitemid 39106845)
-
(2004)
Microbial Pathogenesis
, vol.37
, Issue.2
, pp. 107-110
-
-
Shen, H.1
Chen, W.2
Conlan, J.W.3
-
9
-
-
84867724440
-
Exploitation of host cell biology and evasion of immunity by francisella tularensis
-
Asare, R., and Kwaik, Y. A. (2010) Exploitation of host cell biology and evasion of immunity by francisella tularensis. Front. Micro biol. 1, 145.
-
(2010)
Front. Micro Biol
, vol.1
, pp. 145
-
-
Asare, R.1
Kwaik, Y.A.2
-
10
-
-
34848884287
-
Activation of the inflammasome upon Francisella tularensis infection: Interplay of innate immune pathways and virulence factors
-
DOI 10.1111/j.1462-5822.2007.01022.x
-
Henry, T., and Monack, D. M. (2007) Activation of the inflammasome upon Francisella tularensis infection: interplay of innate immune pathways and virulence factors. Cell. Microbiol. 9, 2543-2551. (Pubitemid 47500508)
-
(2007)
Cellular Microbiology
, vol.9
, Issue.11
, pp. 2543-2551
-
-
Henry, T.1
Monack, D.M.2
-
11
-
-
84862521854
-
Subversion of host recognition and defense systems by Francisella spp
-
Jones, C. L., Napier, B. A., Sampson, T. R., Llewellyn, A. C., Schroeder, M. R., and Weiss, D. S. (2012) Subversion of host recognition and defense systems by Francisella spp. Microbiol. Mol. Biol. Rev. 76, 383-404.
-
(2012)
Microbiol. Mol. Biol. Rev.
, vol.76
, pp. 383-404
-
-
Jones, C.L.1
Napier, B.A.2
Sampson, T.R.3
Llewellyn, A.C.4
Schroeder, M.R.5
Weiss, D.S.6
-
12
-
-
84871918643
-
The subversion of the immune system by francisella tularensis
-
Bosio, C. M. (2011) The subversion of the immune system by francisella tularensis. Front. Microbiol. 2, 9.
-
(2011)
Front. Microbiol
, vol.2
, pp. 9
-
-
Bosio, C.M.1
-
13
-
-
33748079800
-
Characterization of the receptor-ligand pathways important for entry and survival of Francisella tularensis in human macrophages
-
DOI 10.1128/IAI.00795-06
-
Balagopal, A., MacFarlane, A. S., Mohapatra, N., Soni, S., Gunn, J. S., and Schlesinger, L. S. (2006) Characterization of the receptor-ligand pathways important for entry and survival of Francisella tularensis in human macrophages. Infection Immunity 74, 5114-5125. (Pubitemid 44300429)
-
(2006)
Infection and Immunity
, vol.74
, Issue.9
, pp. 5114-5125
-
-
Balagopal, A.1
MacFarlane, A.S.2
Mohapatra, N.3
Soni, S.4
Gunn, J.S.5
Schlesinger, L.S.6
-
14
-
-
52649094980
-
A novel receptor - ligand pathway for entry of francisella tularensis in monocyte-like THP-1 cells: Interaction between surface nucleolin and bacterial elongation factor Tu
-
Barel, M., Hovanessian, A. G., Meibom, K., Briand, J. P., Dupuis, M., and Charbit, A. (2008) A novel receptor - ligand pathway for entry of Francisella tularensis in monocyte-like THP-1 cells: interaction between surface nucleolin and bacterial elongation factor Tu. BMC Microbiol. 8, 145.
-
(2008)
BMC Microbiol
, vol.8
, pp. 145
-
-
Barel, M.1
Hovanessian, A.G.2
Meibom, K.3
Briand, J.P.4
Dupuis, M.5
Charbit, A.6
-
15
-
-
79959484170
-
Phagocytic receptors dictate phagosomal escape and intracellular proliferation of Francisella tularensis
-
Geier, H., and Celli, J. (2011) Phagocytic receptors dictate phagosomal escape and intracellular proliferation of Francisella tularensis. Infection Immunity 79, 2204-2214.
-
(2011)
Infection Immunity
, vol.79
, pp. 2204-2214
-
-
Geier, H.1
Celli, J.2
-
16
-
-
33751501420
-
Differential infection of mononuclear phagocytes by Francisella tularensis: Role of the macrophage mannose receptor
-
DOI 10.1189/jlb.0306219
-
Schulert, G. S., and Allen, L. A. (2006) Differential infection of mononuclear phagocytes by Francisella tularensis: role of the macrophage mannose receptor. J. Leukocyte Biol. 80, 563-571. (Pubitemid 44835790)
-
(2006)
Journal of Leukocyte Biology
, vol.80
, Issue.3
, pp. 563-571
-
-
Schulert, G.S.1
Allen, L.-A.H.2
-
17
-
-
23944445646
-
Francisella tularensis enters macrophages via a novel process involving pseudopod loops
-
DOI 10.1128/IAI.73.9.5892-5902.2005
-
Clemens, D. L., Lee, B. Y., and Horwitz, M. A. (2005) Francisella tularensis enters macrophages via a novel process involving pseudopod loops. Infection Immunity 73, 5892-5902. (Pubitemid 41193026)
-
(2005)
Infection and Immunity
, vol.73
, Issue.9
, pp. 5892-5902
-
-
Clemens, D.L.1
Lee, B.-Y.2
Horwitz, M.A.3
-
18
-
-
0034972441
-
Francisella tularensis induces cytopathogenicity and apoptosis in murine macrophages via a mechanism that requires intracellular bacterial multiplication
-
DOI 10.1128/IAI.69.7.4691-4694.2001
-
Lai, X. H., Golovliov, I., and Sjostedt, A. (2001) Francisella tularensis induces cytopathogenicity and apoptosis in murine macrophages via a mechanism that requires intracellular bacterial multiplication. Infection Immunity 69, 4691-4694. (Pubitemid 32574475)
-
(2001)
Infection and Immunity
, vol.69
, Issue.7
, pp. 4691-4694
-
-
Lai, X.-H.1
Golovliov, I.2
Sjostedt, A.3
-
19
-
-
34249898344
-
An in vitro model system used to study adherence and invasion of Francisella tularensis live vaccine strain in nonphagocytic cells
-
DOI 10.1128/IAI.01811-06
-
Lindemann, S. R., McLendon, M. K., Apicella, M. A., and Jones, B. D. (2007) An in vitro model system used to study adherence and invasion of Francisella tularensis live vaccine strain in nonphagocytic cells. Infection Immunity 75, 3178-3182. (Pubitemid 46870204)
-
(2007)
Infection and Immunity
, vol.75
, Issue.6
, pp. 3178-3182
-
-
Lindemann, S.R.1
McLendon, M.K.2
Apicella, M.A.3
Jones, B.D.4
-
20
-
-
41849148596
-
The tyrosine kinase Syk promotes phagocytosis of Francisella through the activation of Erk
-
Parsa, K. V., Butchar, J. P., Rajaram, M. V., Cremer, T. J., and Tridandapani, S. (2008) The tyrosine kinase Syk promotes phagocytosis of Francisella through the activation of Erk. Mol. Immunol. 45, 3012-3021.
-
(2008)
Mol. Immunol
, vol.45
, pp. 3012-3021
-
-
Parsa, K.V.1
Butchar, J.P.2
Rajaram, M.V.3
Cremer, T.J.4
Tridandapani, S.5
-
21
-
-
50949133928
-
Francisella targets cholesterol-rich host cell membrane domains for entry into macrophages
-
Tamilselvam, B., and Daefler, S. (2008) Francisella targets cholesterol-rich host cell membrane domains for entry into macrophages. J. Immunol. 180, 8262-8271.
-
(2008)
J. Immunol
, vol.180
, pp. 8262-8271
-
-
Tamilselvam, B.1
Daefler, S.2
-
22
-
-
84859743402
-
Francisella tularensis uses cholesterol and clathrin-based endocytic mechanisms to invade hepatocytes
-
Law, H. T., Lin, A. E. J., Kim, Y., Quach, B., Nano, F. E., and Guttman, J. A. (2011) Francisella tularensis uses cholesterol and clathrin-based endocytic mechanisms to invade hepatocytes. Sci Rep-Uk 1.
-
(2011)
Sci Rep-Uk
, pp. 1
-
-
Law, H.T.1
Lin, A.E.J.2
Kim, Y.3
Quach, B.4
Nano, F.E.5
Guttman, J.A.6
-
23
-
-
84875064452
-
Francisella subverts innate immune signaling: Focus On PI3K/Akt
-
Cremer, T. J., Butchar, J. P., and Tridandapani, S. (2011) Francisella subverts innate immune signaling: Focus On PI3K/Akt. Front. Micro biol. 5, 13.
-
(2011)
Front. Micro Biol
, vol.5
, pp. 13
-
-
Cremer, T.J.1
Butchar, J.P.2
Tridandapani, S.3
-
24
-
-
33845496485
-
Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors
-
DOI 10.1128/IAI.00934-06
-
Hajjar, A. M., Harvey, M. D., Shaffer, S. A., Goodlett, D. R., Sjostedt, A., Edebro, H., Forsman, M., Bystrom, M., Pelletier, M., Wilson, C. B., Miller, S. I., Skerrett, S. J., and Ernst, R. K. (2006) Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infection Immunity 74, 6730-6738. (Pubitemid 44913147)
-
(2006)
Infection and Immunity
, vol.74
, Issue.12
, pp. 6730-6738
-
-
Hajjar, A.M.1
Harvey, M.D.2
Shaffer, S.A.3
Goodlett, D.R.4
Sjostedt, A.5
Edebro, H.6
Forsman, M.7
Bystrom, M.8
Pelletier, M.9
Wilson, C.B.10
Miller, S.I.11
Skerrett, S.J.12
Ernst, R.K.13
-
25
-
-
33646357470
-
Toll-like receptor 2 is required for inflammatory responses to Francisella tularensis LVS
-
DOI 10.1128/IAI.74.5.2809-2816.2006
-
Katz, J., Zhang, P., Martin, M., Vogel, S. N., and Michalek, S. M. (2006) Toll-like receptor 2 is required for inflammatory responses to Francisella tularensis LVS. Infection Immunity 74, 2809-2816. (Pubitemid 43672990)
-
(2006)
Infection and Immunity
, vol.74
, Issue.5
, pp. 2809-2816
-
-
Katz, J.1
Zhang, P.2
Martin, M.3
Vogel, S.N.4
Michalek, S.M.5
-
26
-
-
34547636340
-
Toll-like receptor 2-mediated signaling requirements for Francisella tularensis live vaccine strain infection of murine macrophages
-
DOI 10.1128/IAI.01868-06
-
Cole, L. E., Shirey, K. A., Barry, E., Santiago, A., Rallabhandi, P., Elkins, K. L., Puche, A. C., Michalek, S. M., and Vogel, S. N. (2007) Toll-like receptor 2-mediated signaling requirements for Francisella tularensis live vaccine strain infection of murine macrophages. Infection Immunity 75, 4127-4137. (Pubitemid 47206312)
-
(2007)
Infection and Immunity
, vol.75
, Issue.8
, pp. 4127-4137
-
-
Cole, L.E.1
Shirey, K.A.2
Barry, E.3
Santiago, A.4
Rallabhandi, P.5
Elkins, K.L.6
Puche, A.C.7
Michalek, S.M.8
Vogel, S.N.9
-
27
-
-
79956300649
-
Toll-like receptors and their crosstalk with other innate receptors in infection and immunity
-
Kawai, T., and Akira, S. (2011) Toll-like receptors and their crosstalk with other innate receptors in infection and immunity. Immunity 34, 637-650.
-
(2011)
Immunity
, vol.34
, pp. 637-650
-
-
Kawai, T.1
Akira, S.2
-
28
-
-
83655163772
-
Francisella infection triggers activation of the AIM2 inflammasome in murine dendritic cells
-
Belhocine, K., and Monack, D. M. (2012) Francisella infection triggers activation of the AIM2 inflammasome in murine dendritic cells. Cell. Micro biol. 14, 71-80.
-
(2012)
Cell. Micro Biol
, vol.14
, pp. 71-80
-
-
Belhocine, K.1
Monack, D.M.2
-
29
-
-
80052813504
-
Elevated AIM2-mediated pyroptosis triggered by hypercytotoxic Francisella mutant strains is attributed to increased intracellular bacteriolysis
-
Peng, K., Broz, P., Jones, J., Joubert, L. M., and Monack, D. (2011) Elevated AIM2-mediated pyroptosis triggered by hypercytotoxic Francisella mutant strains is attributed to increased intracellular bacteriolysis. Cell. Micro biol. 13, 1586-1600.
-
(2011)
Cell. Micro Biol
, vol.13
, pp. 1586-1600
-
-
Peng, K.1
Broz, P.2
Jones, J.3
Joubert, L.M.4
Monack, D.5
-
30
-
-
77953116282
-
Absent in melanoma 2 is required for innate immune recognition of Francisella tularensis
-
Jones, J. W., Kayagaki, N., Broz, P., Henry, T., Newton, K., O'Rourke, K., Chan, S., Dong, J., Qu, Y., Roose-Girma, M., Dixit, V. M., and Monack, D. M. (2010) Absent in melanoma 2 is required for innate immune recognition of Francisella tularensis. Proc. Natl. Acad. Sci. U. S. A.107, 9771-9776.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 9771-9776
-
-
Jones, J.W.1
Kayagaki, N.2
Broz, P.3
Henry, T.4
Newton, K.5
O'Rourke, K.6
Chan, S.7
Dong, J.8
Qu, Y.9
Roose-Girma, M.10
Dixit, V.M.11
Monack, D.M.12
-
31
-
-
77951263260
-
The AIM2 inflammasome is critical for innate immunity to Francisella tularensis
-
Fernandes-Alnemri, T., Yu, J. W., Juliana, C., Solorzano, L., Kang, S., Wu, J., Datta, P., McCormick, M., Huang, L., McDermott, E., Eisenlohr, L., Landel, C. P., and Alnemri, E. S. (2010) The AIM2 inflammasome is critical for innate immunity to Francisella tularensis. Nat. Immunol. 11, 385-393.
-
(2010)
Nat. Immunol
, vol.11
, pp. 385-393
-
-
Fernandes-Alnemri, T.1
Yu, J.W.2
Juliana, C.3
Solorzano, L.4
Kang, S.5
Wu, J.6
Datta, P.7
McCormick, M.8
Huang, L.9
McDermott, E.10
Eisenlohr, L.11
Landel, C.P.12
Alnemri, E.S.13
-
32
-
-
77951269392
-
The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses
-
Rathinam, V. A., Jiang, Z., Waggoner, S. N., Sharma, S., Cole, L. E., Waggoner, L., Vanaja, S. K., Monks, B. G., Ganesan, S., Latz, E., Hornung, V., Vogel, S. N., Szomolanyi-Tsuda, E., and Fitzgerald, K. A. (2010) The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses. Nat. Immunol. 11, 395-402.
-
(2010)
Nat. Immunol
, vol.11
, pp. 395-402
-
-
Rathinam, V.A.1
Jiang, Z.2
Waggoner, S.N.3
Sharma, S.4
Cole, L.E.5
Waggoner, L.6
Vanaja, S.K.7
Monks, B.G.8
Ganesan, S.9
Latz, E.10
Hornung, V.11
Vogel, S.N.12
Szomolanyi-Tsuda, E.13
Fitzgerald, K.A.14
-
33
-
-
78650210802
-
Differential requirement for Caspase-1 auto proteolysis in pathogen- induced cell death and cytokine processing
-
Broz, P., von Moltke, J., Jones, J. W., Vance, R. E., and Monack, D. M. (2010) Differential requirement for Caspase-1 auto proteolysis in pathogen- induced cell death and cytokine processing. Cell Host Microbe 8, 471-483.
-
(2010)
Cell Host Microbe
, vol.8
, pp. 471-483
-
-
Broz, P.1
Von Moltke, J.2
Jones, J.W.3
Vance, R.E.4
Monack, D.M.5
-
34
-
-
77955603950
-
Mutations of Francisella novicida that alter the mechanism of its phagocytosis by murine macrophages
-
Lai, X. H., Shirley, R. L., Crosa, L., Kanistanon, D., Tempel, R., Ernst, R. K., Gallagher, L. A., Manoil, C., and Heffron, F. (2010) Mutations of Francisella novicida that alter the mechanism of its phagocytosis by murine macrophages. PloS One 5, e11857.
-
(2010)
PloS One
, vol.5
-
-
Lai, X.H.1
Shirley, R.L.2
Crosa, L.3
Kanistanon, D.4
Tempel, R.5
Ernst, R.K.6
Gallagher, L.A.7
Manoil, C.8
Heffron, F.9
-
35
-
-
46449107362
-
Francisella tularensis invasion of lung epithelial cells
-
Craven, R. R., Hall, J. D., Fuller, J. R., Taft-Benz, S., and Kawula, T. H. (2008) Francisella tularensis invasion of lung epithelial cells. Infection Immunity 76, 2833-2842.
-
(2008)
Infection Immunity
, vol.76
, pp. 2833-2842
-
-
Craven, R.R.1
Hall, J.D.2
Fuller, J.R.3
Taft-Benz, S.4
Kawula, T.H.5
-
36
-
-
84869206637
-
Quantitative phosphoproteomic analysis of soybean root hairs inoculated with bradyrhizobium japonicum
-
Nguyen, T. H., Brechenmacher, L., Aldrich, J. T., Clauss, T. R., Gritsenko, M. A., Hixson, K. K., Libault, M., Tanaka, K., Yang, F., Yao, Q., Pasa- Tolic, L., Xu, D., Nguyen, H. T., and Stacey, G. (2012) Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium japonicum. Mol. Cell. Proteomics 11, 1140-1155.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1140-1155
-
-
Nguyen, T.H.1
Brechenmacher, L.2
Aldrich, J.T.3
Clauss, T.R.4
Gritsenko, M.A.5
Hixson, K.K.6
Libault, M.7
Tanaka, K.8
Yang, F.9
Yao, Q.10
Pasa- Tolic, L.11
Xu, D.12
Nguyen, H.T.13
Stacey, G.14
-
37
-
-
61349189040
-
Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput
-
Zhao, R., Ding, S. J., Shen, Y., Camp, D. G. 2nd, Livesay, E. A., Udseth, H., and Smith, R. D. (2009) Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput. J. Chromatog. 877, 663-670.
-
(2009)
J. Chromatog
, vol.877
, pp. 663-670
-
-
Zhao, R.1
Ding, S.J.2
Shen, Y.3
Camp II, D.G.4
Livesay, E.A.5
Udseth, H.6
Smith, R.D.7
-
38
-
-
41349120246
-
DeconMSn: A software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra
-
DOI 10.1093/bioinformatics/btn063
-
Mayampurath, A. M., Jaitly, N., Purvine, S. O., Monroe, M. E., Auberry, K. J., Adkins, J. N., and Smith, R. D. (2008) DeconMSn: A software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra. Bioinformatics 24, 1021-1023. (Pubitemid 351448041)
-
(2008)
Bioinformatics
, vol.24
, Issue.7
, pp. 1021-1023
-
-
Mayampurath, A.M.1
Jaitly, N.2
Purvine, S.O.3
Monroe, M.E.4
Auberry, K.J.5
Adkins, J.N.6
Smith, R.D.7
-
39
-
-
50149117169
-
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
-
Kim, S., Gupta, N., and Pevzner, P. A. (2008) Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases. J. Proteome Res. 7, 3354-3363.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
40
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
DOI 10.1038/nbt1240, PII NBT1240
-
Beausoleil, S. A., Villen, J., Gerber, S. A., Rush, J., and Gygi, S. P. (2006) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 24, 1285-1292. (Pubitemid 44564776)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.10
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
41
-
-
43249087428
-
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
-
Monroe, M. E., Shaw, J. L., Daly, D. S., Adkins, J. N., and Smith, R. D. (2008) MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features. Comput. Biol. Chem. 32, 215-217.
-
(2008)
Comput. Biol. Chem.
, vol.32
, pp. 215-217
-
-
Monroe, M.E.1
Shaw, J.L.2
Daly, D.S.3
Adkins, J.N.4
Smith, R.D.5
-
42
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D., and Altman, R. B. (2001) Missing value estimation methods for DNA microarrays. Bioinformatics 17, 520-525. (Pubitemid 32600498)
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
43
-
-
33644872577
-
Limma: Linear models for microarray data
-
(Gentleman, R. Carey, V. Dudoit, S. Irizarry, R. and Huber, W. eds.), Springer, New York, NY
-
Smyth, G. K. (2005) Limma: linear models for microarray data. in Bioinformatics and Computational Biology Solutions using R and Bioconductor (Gentleman, R., Carey, V., Dudoit, S., Irizarry, R., and Huber, W. eds.), Springer, New York, NY. pp 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
44
-
-
27944499451
-
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
-
DOI 10.1038/nbt1146, PII N1146
-
Schwartz, D., and Gygi, S. P. (2005) An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat. Bio technol. 23, 1391-1398. (Pubitemid 41679391)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.11
, pp. 1391-1398
-
-
Schwartz, D.1
Gygi, S.P.2
-
45
-
-
51049113607
-
Innate DB: Facilitating systems-level analyses of the mammalian innate immune response
-
Lynn, D. J., Winsor, G. L., Chan, C., Richard, N., Laird, M. R., Barsky, A., Gardy, J. L., Roche, F. M., Chan, T. H., Shah, N., Lo, R., Naseer, M., Que, J., Yau, M., Acab, M., Tulpan, D., Whiteside, M. D., Chikatamarla, A., Mah, B., Munzner, T., Hokamp, K., Hancock, R. E., and Brinkman, F. S. (2008) Innate DB: facilitating systems-level analyses of the mammalian innate immune response. Mol. Sys. Biol. 4, 218.
-
(2008)
Mol. Sys. Biol.
, vol.4
, pp. 218
-
-
Lynn, D.J.1
Winsor, G.L.2
Chan, C.3
Richard, N.4
Laird, M.R.5
Barsky, A.6
Gardy, J.L.7
Roche, F.M.8
Chan, T.H.9
Shah, N.10
Lo, R.11
Naseer, M.12
Que, J.13
Yau, M.14
Acab, M.15
Tulpan, D.16
Whiteside, M.D.17
Chikatamarla, A.18
Mah, B.19
Munzner, T.20
Hokamp, K.21
Hancock, R.E.22
Brinkman, F.S.23
more..
-
46
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P. L., and Ideker, T. (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27, 431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
47
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da, W., Sherman, B. T., and Lempicki, R. A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature protocols 4, 44-57.
-
(2009)
Nature Protocols
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
48
-
-
58149263147
-
The phagosomal proteome in interferon-gamma-activated macrophages
-
Trost, M., English, L., Lemieux, S., Courcelles, M., Desjardins, M., and Thibault, P. (2009) The phagosomal proteome in interferon-gamma-activated macrophages. Immunity 30, 143-154.
-
(2009)
Immunity
, vol.30
, pp. 143-154
-
-
Trost, M.1
English, L.2
Lemieux, S.3
Courcelles, M.4
Desjardins, M.5
Thibault, P.6
-
49
-
-
54049154653
-
Evasion of complement-mediated lysis and complement C3 deposition are regulated by Francisella tularensis lipopolysaccharide O antigen
-
Clay, C. D., Soni, S., Gunn, J. S., and Schlesinger, L. S. (2008) Evasion of complement-mediated lysis and complement C3 deposition are regulated by Francisella tularensis lipopolysaccharide O antigen. Journal of immunology 181, 5568-5578.
-
(2008)
Journal of Immunology
, vol.181
, pp. 5568-5578
-
-
Clay, C.D.1
Soni, S.2
Gunn, J.S.3
Schlesinger, L.S.4
-
50
-
-
84866144209
-
Natural IgM mediates complement-dependent uptake of Francisella tularensis by human neutrophils via complement receptors 1 and 3 in nonimmune serum
-
Schwartz, J. T., Barker, J. H., Long, M. E., Kaufman, J., McCracken, J., and Allen, L. A. (2012) Natural IgM mediates complement-dependent uptake of Francisella tularensis by human neutrophils via complement receptors 1 and 3 in nonimmune serum. J. Immunol. 189, 3064-3077.
-
(2012)
J. Immunol.
, vol.189
, pp. 3064-3077
-
-
Schwartz, J.T.1
Barker, J.H.2
Long, M.E.3
Kaufman, J.4
McCracken, J.5
Allen, L.A.6
-
51
-
-
77949834455
-
A nucleator arms race: Cellular control of actin assembly
-
Campellone, K. G., and Welch, M. D. (2010) A nucleator arms race: cellular control of actin assembly. Nat. Rev. 11, 237-251.
-
(2010)
Nat. Rev.
, vol.11
, pp. 237-251
-
-
Campellone, K.G.1
Welch, M.D.2
-
52
-
-
0034292346
-
2
-
Kuwata, H., Yamamoto, S., Miyazaki, Y., Shimbara, S., Nakatani, Y., Suzuki, H., Ueda, N., Yamamoto, S., Murakami, M., and Kudo, I. (2000) Studies on a mechanism by which cytosolic phospholipase A2 regulates the expression and function of type IIA secretory phospholipase A2. J. Immunol. 165, 4024-4031. (Pubitemid 32057314)
-
(2000)
Journal of Immunology
, vol.165
, Issue.7
, pp. 4024-4031
-
-
Kuwata, H.1
Yamamoto, S.2
Miyazaki, Y.3
Shimbara, S.4
Nakatani, Y.5
Suzuki, H.6
Ueda, N.7
Yamamoto, S.8
Murakami, M.9
Kudo, I.10
-
53
-
-
1642360566
-
Specific in vivo phosphorylation sites determine the assembly dynamics of vimentin intermediate filaments
-
DOI 10.1242/jcs.00906
-
Eriksson, J. E., He, T., Trejo-Skalli, A. V., Harmala-Brasken, A. S., Hellman, J., Chou, Y. H., and Goldman, R. D. (2004) Specific in vivo phosphorylation sites determine the assembly dynamics of vimentin intermediate filaments. J. Cell Sci. 117, 919-932. (Pubitemid 38386949)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.6
, pp. 919-932
-
-
Eriksson, J.E.1
He, T.2
Trejo-Skalli, A.V.3
Harmala-Brasken, A.-S.4
Hellman, J.5
Chou, Y.-H.6
Goldman, R.D.7
-
54
-
-
84865179916
-
Tristetraprolindriven regulatory circuit controls quality and timing of mRNA decay in inflammation
-
Kratochvill, F., Machacek, C., Vogl, C., Ebner, F., Sedlyarov, V., Gruber, A. R., Hartweger, H., Vielnascher, R., Karaghiosoff, M., Rulicke, T., Muller, M., Hofacker, I., Lang, R., and Kovarik, P. (2011) Tristetraprolindriven regulatory circuit controls quality and timing of mRNA decay in inflammation. Mol. Sys. Biol. 7, 560.
-
(2011)
Mol. Sys. Biol.
, vol.7
, pp. 560
-
-
Kratochvill, F.1
Machacek, C.2
Vogl, C.3
Ebner, F.4
Sedlyarov, V.5
Gruber, A.R.6
Hartweger, H.7
Vielnascher, R.8
Karaghiosoff, M.9
Rulicke, T.10
Muller, M.11
Hofacker, I.12
Lang, R.13
Kovarik, P.14
-
55
-
-
78049434471
-
MAPKAP kinases MK2 and MK3 in inflammation: Complex regulation of TNF biosynthesis via expression and phosphorylation of tristetraprolin
-
Ronkina, N., Menon, M. B., Schwermann, J., Tiedje, C., Hitti, E., Kotlyarov, A., and Gaestel, M. (2010) MAPKAP kinases MK2 and MK3 in inflammation: complex regulation of TNF biosynthesis via expression and phosphorylation of tristetraprolin. Biochem. Pharmacol. 80, 1915-1920.
-
(2010)
Biochem. Pharmacol
, vol.80
, pp. 1915-1920
-
-
Ronkina, N.1
Menon, M.B.2
Schwermann, J.3
Tiedje, C.4
Hitti, E.5
Kotlyarov, A.6
Gaestel, M.7
-
56
-
-
84877793134
-
Tristetraprolin (TTP): Interactions with mRNA and proteins, and current thoughts on mechanisms of action
-
Brooks, S. A., and Blackshear, P. J. (2013) Tristetraprolin (TTP): interactions with mRNA and proteins, and current thoughts on mechanisms of action. Biochim. Biophys. Acta 1829, 666-679.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 666-679
-
-
Brooks, S.A.1
Blackshear, P.J.2
-
57
-
-
33947495156
-
Tristetraprolin (TTP)-14-3-3 complex formation protects TTP from dephosphorylation by protein phosphatase 2a and stabilizes tumor necrosis factor-α mRNA
-
DOI 10.1074/jbc.M607347200
-
Sun, L., Stoecklin, G., Van Way, S., Hinkovska-Galcheva, V., Guo, R. F., Anderson, P., and Shanley, T. P. (2007) Tristetraprolin (TTP)-14-3-3 complex formation protects TTP from dephosphorylation by protein phosphatase 2a and stabilizes tumor necrosis factor-alpha mRNA. J. Biol. Chem. 282, 3766-3777. (Pubitemid 47084478)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.6
, pp. 3766-3777
-
-
Sun, L.1
Stoecklin, G.2
Van Way, S.3
Hinkovska-Galcheva, V.4
Guo, R.-F.5
Anderson, P.6
Shanley, T.P.7
-
58
-
-
51449099913
-
Microarray analysis of human monocytes infected with Francisella tularensis identifies new targets of host response subversion
-
Butchar, J. P., Cremer, T. J., Clay, C. D., Gavrilin, M. A., Wewers, M. D., Marsh, C. B., Schlesinger, L. S., and Tridandapani, S. (2008) Microarray analysis of human monocytes infected with Francisella tularensis identifies new targets of host response subversion. PloS One 3, e2924.
-
(2008)
PloS One
, vol.3
-
-
Butchar, J.P.1
Cremer, T.J.2
Clay, C.D.3
Gavrilin, M.A.4
Wewers, M.D.5
Marsh, C.B.6
Schlesinger, L.S.7
Tridandapani, S.8
-
59
-
-
84861135683
-
Myeloid-specific tristetraprolin deficiency in mice results in extreme lipopolysaccharide sensitivity in an otherwise minimal phenotype
-
Qiu, L. Q., Stumpo, D. J., and Blackshear, P. J. (2012) Myeloid-specific tristetraprolin deficiency in mice results in extreme lipopolysaccharide sensitivity in an otherwise minimal phenotype. J. Immunol. 188, 5150-5159.
-
(2012)
J. Immunol
, vol.188
, pp. 5150-5159
-
-
Qiu, L.Q.1
Stumpo, D.J.2
Blackshear, P.J.3
-
60
-
-
0026048272
-
Interleukin 1 is processed and released during apoptosis
-
Hogquist, K. A., Nett, M. A., Unanue, E. R., and Chaplin, D. D. (1991) Interleukin 1 is processed and released during apoptosis. Proc. Natl. Acad. Sci. U. S. A. 88, 8485-8489. (Pubitemid 21915381)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.19
, pp. 8485-8489
-
-
Hogquist, K.A.1
Nett, M.A.2
Unanue, E.R.3
Chaplin, D.D.4
-
62
-
-
84859390026
-
Francisella tularensis inhibits the intrinsic and extrinsic pathways to delay constitutive apoptosis and prolong human neutrophil lifespan
-
Schwartz, J. T., Barker, J. H., Kaufman, J., Fayram, D. C., McCracken, J. M., and Allen, L. A. (2012) Francisella tularensis inhibits the intrinsic and extrinsic pathways to delay constitutive apoptosis and prolong human neutrophil lifespan. J. Immunol. 188, 3351-3363.
-
(2012)
J. Immunol
, vol.188
, pp. 3351-3363
-
-
Schwartz, J.T.1
Barker, J.H.2
Kaufman, J.3
Fayram, D.C.4
McCracken, J.M.5
Allen, L.A.6
-
63
-
-
84876126888
-
Francisella tularensis alters human neutrophil gene expression: Insights into the molecular basis of delayed neutrophil apoptosis
-
Schwartz, J. T., Bandyopadhyay, S., Kobayashi, S. D., McCracken, J., Whitney, A. R., Deleo, F. R., and Allen, L. A. (2013) Francisella tularensis alters human neutrophil gene expression: insights into the molecular basis of delayed neutrophil apoptosis. J. Innate Immun. 5, 124-136.
-
(2013)
J. Innate Immun
, vol.5
, pp. 124-136
-
-
Schwartz, J.T.1
Bandyopadhyay, S.2
Kobayashi, S.D.3
McCracken, J.4
Whitney, A.R.5
Deleo, F.R.6
Allen, L.A.7
|