메뉴 건너뛰기




Volumn 195, Issue 3, 2013, Pages 1007-1025

The dynamics of genetic draft in rapidly adapting populations

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ALLELE; ARTICLE; BIRTH RATE; FEEDBACK SYSTEM; GENE MUTATION; GENETIC VARIABILITY; HUMAN; MOLECULAR DYNAMICS; MUTATION RATE; POPULATION GENETICS; POPULATION GROWTH; POPULATION SIZE; PRIORITY JOURNAL; PROBABILITY;

EID: 84887037026     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.156430     Document Type: Article
Times cited : (19)

References (52)
  • 1
    • 59449103500 scopus 로고    scopus 로고
    • Controlling type-i error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA
    • Andolfatto, P., 2008 Controlling type-i error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA. Genetics 180: 1767-1771.
    • (2008) Genetics , vol.180 , pp. 1767-1771
    • Andolfatto, P.1
  • 2
    • 84855944834 scopus 로고    scopus 로고
    • How genealogies are affected by the speed of evolution
    • Brunet, E., and B. Derrida, 2012 How genealogies are affected by the speed of evolution. Philos. Mag. 92: 255-271.
    • (2012) Philos. Mag , vol.92 , pp. 255-271
    • Brunet, E.1    Derrida, B.2
  • 3
    • 84874462104 scopus 로고    scopus 로고
    • Genealogies in simple models of evolution
    • Brunet, E., and B. Derrida, 2013 Genealogies in simple models of evolution. J. Stat. Phys. P01006.
    • (2013) J. Stat. Phys
    • Brunet, E.1    Derrida, B.2
  • 4
    • 52049126703 scopus 로고    scopus 로고
    • The stochastic edge in adaptive evolution
    • Brunet, E., I. M. Rouzine, and C. O. Wilke, 2008 The stochastic edge in adaptive evolution. Genetics 179: 603-620.
    • (2008) Genetics , vol.179 , pp. 603-620
    • Brunet, E.1    Rouzine, I.M.2    Wilke, C.O.3
  • 5
    • 44649110284 scopus 로고    scopus 로고
    • The McDonald-Kreitman test and slightly deleterious mutations
    • Charlesworth, J., and A. Eyre-Walker, 2008 The McDonald-Kreitman test and slightly deleterious mutations. Mol. Biol. Evol. 25: 1007-1015.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1007-1015
    • Charlesworth, J.1    Eyre-Walker, A.2
  • 6
    • 33646204788 scopus 로고    scopus 로고
    • Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli
    • de Visser, J. A., and D. E. Rozen, 2006 Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli. Genetics 172: 2093-2100.
    • (2006) Genetics , vol.172 , pp. 2093-2100
    • de Visser, J.A.1    Rozen, D.E.2
  • 7
    • 0033555421 scopus 로고    scopus 로고
    • Diminishing returns from mutation supply rate in asexual populations
    • de Visser, J. A., C. W. Zeyl, P. J. Gerrish, J. L. Blanchard, and R. E. Lenski, 1999 Diminishing returns from mutation supply rate in asexual populations. Science 283: 404-406.
    • (1999) Science , vol.283 , pp. 404-406
    • de Visser, J.A.1    Zeyl, C.W.2    Gerrish, P.J.3    Blanchard, J.L.4    Lenski, R.E.5
  • 8
    • 84865104714 scopus 로고    scopus 로고
    • Dynamics of neutral and selected alleles when the offspring distribution is skewed
    • Der, R., C. Epstein, and J. B. Plotkin, 2012 Dynamics of neutral and selected alleles when the offspring distribution is skewed. Genetics 191: 1331-1344.
    • (2012) Genetics , vol.191 , pp. 1331-1344
    • Der, R.1    Epstein, C.2    Plotkin, J.B.3
  • 9
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation-selection balance and the effect of linkage on positive selection
    • Desai, M., and D. Fisher, 2007 Beneficial mutation-selection balance and the effect of linkage on positive selection. Genetics 176: 1759.
    • (2007) Genetics , vol.176 , pp. 1759
    • Desai, M.1    Fisher, D.2
  • 10
    • 84876366774 scopus 로고    scopus 로고
    • Genetic diversity and the structure of genealogies in rapidly adapting populations
    • Desai, M., A. Walczak, and D. Fisher, 2013 Genetic diversity and the structure of genealogies in rapidly adapting populations. Genetics 193: 565-585.
    • (2013) Genetics , vol.193 , pp. 565-585
    • Desai, M.1    Walczak, A.2    Fisher, D.3
  • 11
    • 33646168295 scopus 로고    scopus 로고
    • Coalescent processes when the distribution of offspring number among individuals is highly skewed
    • Eldon, B., and J. Wakeley, 2006 Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172: 2621-2633.
    • (2006) Genetics , vol.172 , pp. 2621-2633
    • Eldon, B.1    Wakeley, J.2
  • 12
    • 68949202924 scopus 로고    scopus 로고
    • Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
    • Eyre-Walker, A., and P. D. Keightley, 2009 Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol. Biol. Evol. 26: 2097-2108.
    • (2009) Mol. Biol. Evol , vol.26 , pp. 2097-2108
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 13
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J. C., and C.-I. Wu, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 14
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • Fay, J. C., G. J. Wyckoff, and C.-I. Wu, 2001 Positive and negative selection on the human genome. Genetics 158: 1227-1234.
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.-I.3
  • 15
    • 84874450978 scopus 로고    scopus 로고
    • Asexual evolution waves: Fluctuations and universality
    • Fisher, D. S., 2013 Asexual evolution waves: fluctuations and universality. J. Stat. Mech. P01011.
    • (2013) J. Stat. Mech
    • Fisher, D.S.1
  • 16
    • 61849168524 scopus 로고    scopus 로고
    • Clonal interference, multiple mutations and adaptation in large asexual populations
    • Fogle, C. A., J. L. Nagle, and M. M. Desai, 2008 Clonal interference, multiple mutations and adaptation in large asexual populations. Genetics 180: 2163-2173.
    • (2008) Genetics , vol.180 , pp. 2163-2173
    • Fogle, C.A.1    Nagle, J.L.2    Desai, M.M.3
  • 17
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J., and R. E. Lenski, 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102-103: 127-144.
    • (1998) Genetica , vol.102 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 18
    • 0034082076 scopus 로고    scopus 로고
    • Genetic drift in an infinite population: The pseudohitchhiking model
    • Gillespie, J. H., 2000 Genetic drift in an infinite population: the pseudohitchhiking model. Genetics 155: 909-919.
    • (2000) Genetics , vol.155 , pp. 909-919
    • Gillespie, J.H.1
  • 19
    • 0035678847 scopus 로고    scopus 로고
    • Is the population size of a species relevant to its evolution?
    • Gillespie, J. H., 2001 Is the population size of a species relevant to its evolution? Evolution 55: 2161-2169.
    • (2001) Evolution , vol.55 , pp. 2161-2169
    • Gillespie, J.H.1
  • 20
    • 84859448396 scopus 로고    scopus 로고
    • Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
    • Good, B. H., I. M. Rouzine, D. J. Balick, O. Hallatschek, and M. M. Desai, 2012 Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc. Natl. Acad. Sci. USA 109: 4950-4955.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 4950-4955
    • Good, B.H.1    Rouzine, I.M.2    Balick, D.J.3    Hallatschek, O.4    Desai, M.M.5
  • 21
    • 79952179424 scopus 로고    scopus 로고
    • The noisy edge of traveling waves
    • Hallatschek, O., 2011 The noisy edge of traveling waves. Proc. Natl. Acad. Sci. USA 108: 1783-1787.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 1783-1787
    • Hallatschek, O.1
  • 22
    • 70349656349 scopus 로고    scopus 로고
    • The impact of population size on the evolution of asexual microbes on smooth vs. rugged fitness landscapes
    • Handel, A., and D. E. Rozen, 2009 The impact of population size on the evolution of asexual microbes on smooth vs. rugged fitness landscapes. BMC Evol. Biol. 9: 236.
    • (2009) BMC Evol. Biol , vol.9 , pp. 236
    • Handel, A.1    Rozen, D.E.2
  • 23
    • 79951829399 scopus 로고    scopus 로고
    • Classic selective sweeps were rare in recent human evolution
    • Hernandez, R. D., J. L. Kelley, E. Elyashiv, S. C. Melton, A. Auton et al., 2011 Classic selective sweeps were rare in recent human evolution. Science 331: 920-924.
    • (2011) Science , vol.331 , pp. 920-924
    • Hernandez, R.D.1    Kelley, J.L.2    Elyashiv, E.3    Melton, S.C.4    Auton, A.5
  • 24
    • 79957438524 scopus 로고    scopus 로고
    • Evolutionary advantage of small populations on complex fitness landscapes
    • Jain, K., J. Krug, and S.-C. Park, 2010 Evolutionary advantage of small populations on complex fitness landscapes. Evolution 65: 1945-1955.
    • (2010) Evolution , vol.65 , pp. 1945-1955
    • Jain, K.1    Krug, J.2    Park, S.-C.3
  • 25
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • Kao, K. C., and G. Sherlock, 2008 Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat. Genet. 40: 1499-1504.
    • (2008) Nat. Genet , vol.40 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 26
    • 77954167479 scopus 로고    scopus 로고
    • Evidence that adaptation in Drosophila is not limited by mutation at single sites
    • Karasov, T., P. W. Messer, and D. A. Petrov, 2010 Evidence that adaptation in Drosophila is not limited by mutation at single sites. PLoS Genet. 6: e1000924.
    • (2010) PLoS Genet , vol.6
    • Karasov, T.1    Messer, P.W.2    Petrov, D.A.3
  • 27
    • 32544453964 scopus 로고    scopus 로고
    • Adaptation in sexuals vs. asexuals: Clonal interference and the Fisher-Muller model
    • Kim, Y., and H. A. Orr, 2005 Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model. Genetics 171: 1377-1386.
    • (2005) Genetics , vol.171 , pp. 1377-1386
    • Kim, Y.1    Orr, H.A.2
  • 28
    • 0038192127 scopus 로고    scopus 로고
    • Selective sweeps in the presence of interference among partially linked loci
    • Kim, Y., and W. Stephan, 2003 Selective sweeps in the presence of interference among partially linked loci. Genetics 164: 389-398.
    • (2003) Genetics , vol.164 , pp. 389-398
    • Kim, Y.1    Stephan, W.2
  • 29
    • 79960137718 scopus 로고    scopus 로고
    • Genetic variation and the fate of beneficial mutations in asexual populations
    • Lang, G. I., D. Botstein, and M. M. Desai, 2011 Genetic variation and the fate of beneficial mutations in asexual populations. Genetics 188: 647-661.
    • (2011) Genetics , vol.188 , pp. 647-661
    • Lang, G.I.1    Botstein, D.2    Desai, M.M.3
  • 30
    • 84883132678 scopus 로고    scopus 로고
    • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
    • Lang, G. I., D. P. Rice, M. J. Hickman, E. Sodergren, G. M. Weinstock et al., 2013 Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500: 571-574.
    • (2013) Nature , vol.500 , pp. 571-574
    • Lang, G.I.1    Rice, D.P.2    Hickman, M.J.3    Sodergren, E.4    Weinstock, G.M.5
  • 31
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the ADH locus in Drosophila
    • McDonald, J. H., and M. Kreitman, 1991 Adaptive protein evolution at the ADH locus in Drosophila. Nature 351: 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 32
    • 0034099647 scopus 로고    scopus 로고
    • The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation
    • McVean, G. A. T., and B. Charlesworth, 2000 The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation. Genetics 155: 929-944.
    • (2000) Genetics , vol.155 , pp. 929-944
    • McVean, G.A.T.1    Charlesworth, B.2
  • 33
    • 84878147503 scopus 로고    scopus 로고
    • Frequent adaptation and the McDonald-Kreitman test
    • Messer, P. W., and D. A. Petrov, 2013 Frequent adaptation and the McDonald-Kreitman test. Proc. Natl. Acad. Sci. USA 110: 8615-8620.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 8615-8620
    • Messer, P.W.1    Petrov, D.A.2
  • 34
    • 78951475034 scopus 로고    scopus 로고
    • Mutational effects and population dynamics during viral adaptation challenge current models
    • Miller, C. R., P. Joyce, and H. A. Wichman, 2011 Mutational effects and population dynamics during viral adaptation challenge current models. Genetics 187: 185-202.
    • (2011) Genetics , vol.187 , pp. 185-202
    • Miller, C.R.1    Joyce, P.2    Wichman, H.A.3
  • 35
    • 0033543602 scopus 로고    scopus 로고
    • Clonal interference and the evolution of RNA viruses
    • Miralles, R., P. J. Gerrish, A. Moya, and S. F. Elena, 1999 Clonal interference and the evolution of RNA viruses. Science 285: 1745-1747.
    • (1999) Science , vol.285 , pp. 1745-1747
    • Miralles, R.1    Gerrish, P.J.2    Moya, A.3    Elena, S.F.4
  • 36
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller, H., 1932 Some genetic aspects of sex. Am. Nat. 66: 118-138.
    • (1932) Am. Nat , vol.66 , pp. 118-138
    • Muller, H.1
  • 37
    • 84872201548 scopus 로고    scopus 로고
    • Genealogies of rapidly adapting populations
    • Neher, R. A., and O. Hallatschek, 2013 Genealogies of rapidly adapting populations. Proc. Natl. Acad. Sci. USA 110: 437-442.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 437-442
    • Neher, R.A.1    Hallatschek, O.2
  • 38
    • 80051478113 scopus 로고    scopus 로고
    • Genetic draft and quasi-neutrality in large facultatively sexual populations
    • Neher, R., and B. Shraiman, 2011 Genetic draft and quasi-neutrality in large facultatively sexual populations. Genetics 188: 975-996.
    • (2011) Genetics , vol.188 , pp. 975-996
    • Neher, R.1    Shraiman, B.2
  • 39
    • 77749268358 scopus 로고    scopus 로고
    • Rate of adaptation in large sexual populations
    • Neher, R. A., B. I. Shraiman, and D. S. Fisher, 2010 Rate of adaptation in large sexual populations. Genetics 184: 467-481.
    • (2010) Genetics , vol.184 , pp. 467-481
    • Neher, R.A.1    Shraiman, B.I.2    Fisher, D.S.3
  • 40
    • 36749000572 scopus 로고    scopus 로고
    • Clonal interference in large populations
    • Park, S.-C., and J. Krug, 2007 Clonal interference in large populations. Proc. Natl. Acad. Sci. USA 104: 18135-18140.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18135-18140
    • Park, S.-C.1    Krug, J.2
  • 41
    • 77249156857 scopus 로고    scopus 로고
    • The speed of evolution in large asexual populations
    • Park, S.-C., D. Simon, and J. Krug, 2010 The speed of evolution in large asexual populations. J. Stat. Phys. 138: 381.
    • (2010) J. Stat. Phys , vol.138 , pp. 381
    • Park, S.-C.1    Simon, D.2    Krug, J.3
  • 42
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation
    • Pritchard, J. K., J. K. Pickrell, and G. Coop, 2010 The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Curr. Biol. 20: R208-R215.
    • (2010) Curr. Biol , vol.20
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 44
    • 37848998555 scopus 로고    scopus 로고
    • The traveling wave approach to asexual evolution: Muller's ratchet and speed of adaptation
    • Rouzine, I. M., E. Brunet, and C. O. Wilke, 2008 The traveling wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor. Popul. Biol. 73: 24-46.
    • (2008) Theor. Popul. Biol , vol.73 , pp. 24-46
    • Rouzine, I.M.1    Brunet, E.2    Wilke, C.O.3
  • 45
    • 45849137874 scopus 로고    scopus 로고
    • Heterogeneous adaptive trajectories of small populations on complex fitness landscapes
    • Rozen, D. E., M. G. Habets, A. Handel, and J. A. G. M. de Visser, 2008 Heterogeneous adaptive trajectories of small populations on complex fitness landscapes. PLOS ONE 3:e1715.
    • (2008) PLOS ONE , vol.3
    • Rozen, D.E.1    Habets, M.G.2    Handel, A.3    de Visser, J.A.G.M.4
  • 46
    • 72949085559 scopus 로고    scopus 로고
    • The properties of adaptive walks in evolving populations of fungus
    • Schoustra, S. E., T. Bataillon, D. R. Gifford, and R. Kassen, 2009 The properties of adaptive walks in evolving populations of fungus. PLoS Biol 7: e1000250.
    • (2009) PLoS Biol , vol.7
    • Schoustra, S.E.1    Bataillon, T.2    Gifford, D.R.3    Kassen, R.4
  • 47
    • 0037843651 scopus 로고    scopus 로고
    • Coalescent processes obtained from supercritical Galton-Watson processes
    • Schweinsberg, J., 2003 Coalescent processes obtained from supercritical Galton-Watson processes. Stochast. Process. Appl 160: 107-139.
    • (2003) Stochast. Process. Appl , vol.160 , pp. 107-139
    • Schweinsberg, J.1
  • 49
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith, J. M., and J. Haigh, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
    • (1974) Genet. Res , vol.23 , pp. 23-35
    • Smith, J.M.1    Haigh, J.2
  • 51
    • 0001444323 scopus 로고    scopus 로고
    • RNA virus evolution via a fitness-space model
    • Tsimring, L., H. Levine, and D. Kessler, 1996 RNA virus evolution via a fitness-space model. Phys. Rev. Lett. 76: 4440-4443.
    • (1996) Phys. Rev. Lett , vol.76 , pp. 4440-4443
    • Tsimring, L.1    Levine, H.2    Kessler, D.3
  • 52
    • 0001111819 scopus 로고
    • The distribution of gene frequencies under irreversible mutation
    • Wright, S., 1938 The distribution of gene frequencies under irreversible mutation. Proc. Natl. Acad. Sci. USA 24: 253-259.
    • (1938) Proc. Natl. Acad. Sci. USA , vol.24 , pp. 253-259
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.