-
1
-
-
0026081453
-
The regulation of genetic competence in Bacillus subtilis
-
Dubnau D. The regulation of genetic competence in Bacillus subtilis. Mol. Microbiol. 1991, 5(1):11.
-
(1991)
Mol. Microbiol.
, vol.5
, Issue.1
, pp. 11
-
-
Dubnau, D.1
-
2
-
-
0028170412
-
ComK acts as an autoregulatory control switch in the signal transduction route to competence in Bacillus subtilis
-
van Sinderen D., Venema G. ComK acts as an autoregulatory control switch in the signal transduction route to competence in Bacillus subtilis. J. Bacteriol. 1994, 176(18):5762.
-
(1994)
J. Bacteriol.
, vol.176
, Issue.18
, pp. 5762
-
-
van Sinderen, D.1
Venema, G.2
-
3
-
-
0028940059
-
ComK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis
-
van Sinderen D., Luttinger A., Kong L., Dubnau D., Venema G., Hamoen L. ComK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis. Mol. Microbiol. 1995, 15(3):455.
-
(1995)
Mol. Microbiol.
, vol.15
, Issue.3
, pp. 455
-
-
van Sinderen, D.1
Luttinger, A.2
Kong, L.3
Dubnau, D.4
Venema, G.5
Hamoen, L.6
-
4
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
Süel G.M., Garcia-Ojalvo J., Liberman L.M., Elowitz M.B. An excitable gene regulatory circuit induces transient cellular differentiation. Nature 2006, 440(7083):545.
-
(2006)
Nature
, vol.440
, Issue.7083
, pp. 545
-
-
Süel, G.M.1
Garcia-Ojalvo, J.2
Liberman, L.M.3
Elowitz, M.B.4
-
5
-
-
34047118521
-
Tunability and noise dependence in differentiation dynamics
-
Süel G.M., Kulkarni R.P., Dworkin J., Garcia-Ojalvo J., Elowitz M.B. Tunability and noise dependence in differentiation dynamics. Science 2007, 315(5819):1716.
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1716
-
-
Süel, G.M.1
Kulkarni, R.P.2
Dworkin, J.3
Garcia-Ojalvo, J.4
Elowitz, M.B.5
-
6
-
-
70350336588
-
Architecture-dependent noise discriminates functionally analogous differentiation circuits
-
Çaǧatay T., Turcotte M., Elowitz M.B., Garcia-Ojalvo J., Süel G.M. Architecture-dependent noise discriminates functionally analogous differentiation circuits. Cell 2009, 139(3):512.
-
(2009)
Cell
, vol.139
, Issue.3
, pp. 512
-
-
Çaǧatay, T.1
Turcotte, M.2
Elowitz, M.B.3
Garcia-Ojalvo, J.4
Süel, G.M.5
-
7
-
-
84881236131
-
Point-cycle bistability and stochasticity in a regulatory circuit for Bacillus subtilis competence
-
Xi H., Duan L., Turcotte M. Point-cycle bistability and stochasticity in a regulatory circuit for Bacillus subtilis competence. Math. Biosci. 2013, 244(2):135.
-
(2013)
Math. Biosci.
, vol.244
, Issue.2
, pp. 135
-
-
Xi, H.1
Duan, L.2
Turcotte, M.3
-
8
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie Daniel T. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 1976, 22(4):403.
-
(1976)
J. Comput. Phys.
, vol.22
, Issue.4
, pp. 403
-
-
Gillespie, D.T.1
-
9
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie Daniel T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 1977, 81(25):2340.
-
(1977)
J. Phys. Chem.
, vol.81
, Issue.25
, pp. 2340
-
-
Gillespie, D.T.1
-
10
-
-
0024731820
-
The quasi-steady-state assumption: a case study in perturbation
-
Segel L., Slemrod M. The quasi-steady-state assumption: a case study in perturbation. SIAM Rev. 1989, 31(3):446.
-
(1989)
SIAM Rev.
, vol.31
, Issue.3
, pp. 446
-
-
Segel, L.1
Slemrod, M.2
-
11
-
-
33746626536
-
Use and abuse of the quasi-steady-state approximation
-
Flach E.H., Schnell S. Use and abuse of the quasi-steady-state approximation. IEE Proc. Syst. Biol. 2006, 153(4):187.
-
(2006)
IEE Proc. Syst. Biol.
, vol.153
, Issue.4
, pp. 187
-
-
Flach, E.H.1
Schnell, S.2
-
12
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie D.T. Stochastic simulation of chemical kinetics. Ann. Rev. Phys. Chem. 2007, 58:35.
-
(2007)
Ann. Rev. Phys. Chem.
, vol.58
, pp. 35
-
-
Gillespie, D.T.1
-
13
-
-
0042217557
-
Nonlinear Dynamics and Chaos: with Applications to Physics, Piology, Chemistry, and Engineering
-
Addison-Wesley Pub., Reading, Mass
-
Strogatz Steven H. Nonlinear Dynamics and Chaos: with Applications to Physics, Piology, Chemistry, and Engineering. Studies in Nonlinearity 1994, Addison-Wesley Pub., Reading, Mass.
-
(1994)
Studies in Nonlinearity
-
-
Strogatz, S.H.1
-
14
-
-
37248999420
-
General scaling law in the saddle-node bifurcation: a complex phase space study
-
Fontich E., Sardanyes J. General scaling law in the saddle-node bifurcation: a complex phase space study. J. Phys. Math. Theor. 2008, 41(1).
-
(2008)
J. Phys. Math. Theor.
, vol.41
, Issue.1
-
-
Fontich, E.1
Sardanyes, J.2
-
15
-
-
56949102681
-
Stochastic switching to competence
-
Leisner M., Stingl K., Frey E., Maier B. Stochastic switching to competence. Curr. Opin. Microbiol. 2008, 11(6):553.
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, Issue.6
, pp. 553
-
-
Leisner, M.1
Stingl, K.2
Frey, E.3
Maier, B.4
-
16
-
-
79957710315
-
Quantifying the waddington landscape and biological paths for development and differentiation
-
Wang J., Zhang K., Xu L., Wang E. Quantifying the waddington landscape and biological paths for development and differentiation. Proc. Nat. Acad. Sci. USA 2011, 108(20):8257.
-
(2011)
Proc. Nat. Acad. Sci. USA
, vol.108
, Issue.20
, pp. 8257
-
-
Wang, J.1
Zhang, K.2
Xu, L.3
Wang, E.4
-
17
-
-
77952914558
-
The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation
-
Wang J., Xu L., Wang E., Huang S. The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation. Biophys. J. 2010, 99(1):29.
-
(2010)
Biophys. J.
, vol.99
, Issue.1
, pp. 29
-
-
Wang, J.1
Xu, L.2
Wang, E.3
Huang, S.4
-
18
-
-
77957734642
-
Kinetic paths, time scale, and underlying landscapes: a path integral framework to study global natures of nonequilibrium systems and networks
-
Wang J., Zhang K., Wang E. Kinetic paths, time scale, and underlying landscapes: a path integral framework to study global natures of nonequilibrium systems and networks. J. Chem. Phys. 2010, 133(12):125103.
-
(2010)
J. Chem. Phys.
, vol.133
, Issue.12
, pp. 125103
-
-
Wang, J.1
Zhang, K.2
Wang, E.3
-
19
-
-
50449104011
-
Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations
-
Wang J., Xu L., Wang E. Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations. Proc. Nat. Acad. Sci. USA 2008, 105(34):12271.
-
(2008)
Proc. Nat. Acad. Sci. USA
, vol.105
, Issue.34
, pp. 12271
-
-
Wang, J.1
Xu, L.2
Wang, E.3
-
20
-
-
0039908049
-
Simulated Annealing: Theory and Applications
-
Kluwer Academic Publishers, Dordrecht, Boston Norwell, MA, USA
-
van Laarhoven P.J.M., Aarts E.H.L. Simulated Annealing: Theory and Applications. Mathematics and its Applications 1987, Kluwer Academic Publishers, Dordrecht, Boston Norwell, MA, USA.
-
(1987)
Mathematics and its Applications
-
-
van Laarhoven, P.J.M.1
Aarts, E.H.L.2
-
21
-
-
47649111578
-
Exponential sensitivity of noise-driven switching in genetic networks
-
Mehta P., Mukhopadhyay R., Wingreen N.S. Exponential sensitivity of noise-driven switching in genetic networks. Phys. Biol. 2008, 5(2):026005.
-
(2008)
Phys. Biol.
, vol.5
, Issue.2
, pp. 026005
-
-
Mehta, P.1
Mukhopadhyay, R.2
Wingreen, N.S.3
-
22
-
-
78649838304
-
Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene
-
Zong C., So L.H., Sepulveda L.A., Skinner S.O., Golding I. Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene. Mol. Syst. Biol. 2010, 6:440.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 440
-
-
Zong, C.1
So, L.H.2
Sepulveda, L.A.3
Skinner, S.O.4
Golding, I.5
-
23
-
-
79960640740
-
Determining the stability of genetic switches: explicitly accounting for mrna noise
-
Assaf M., Roberts E., Luthey-Schulten Z. Determining the stability of genetic switches: explicitly accounting for mrna noise. Phys. Rev. Lett. 2011, 106(24):248102.
-
(2011)
Phys. Rev. Lett.
, vol.106
, Issue.24
, pp. 248102
-
-
Assaf, M.1
Roberts, E.2
Luthey-Schulten, Z.3
-
24
-
-
33751347484
-
The finite state projection algorithm for the solution of the chemical master equation
-
Munsky B., Khammash M. The finite state projection algorithm for the solution of the chemical master equation. J. Chem. Phys. 2006, 124(4).
-
(2006)
J. Chem. Phys.
, vol.124
, Issue.4
-
-
Munsky, B.1
Khammash, M.2
-
25
-
-
43549125989
-
Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability
-
Cao Y., Liang J. Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability. BMC Syst. Biol. 2008, 2:30.
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 30
-
-
Cao, Y.1
Liang, J.2
-
26
-
-
77952160818
-
Microrna-101 negatively regulates Ezh2 and its expression is modulated by androgen receptor and HIF-1alpha/HIF-1beta
-
Cao P., Deng Z., Wan M., Huang W., Cramer S.D., Xu J., Lei M., Sui G. Microrna-101 negatively regulates Ezh2 and its expression is modulated by androgen receptor and HIF-1alpha/HIF-1beta. Mol. Cancer 2010, 9:108.
-
(2010)
Mol. Cancer
, vol.9
, pp. 108
-
-
Cao, P.1
Deng, Z.2
Wan, M.3
Huang, W.4
Cramer, S.D.5
Xu, J.6
Lei, M.7
Sui, G.8
-
27
-
-
79952619659
-
Landscape and flux decomposition for exploring global natures of non-equilibrium dynamical systems under intrinsic statistical fluctuations
-
Li Chunhe, Wang Erkang, Wang Jin Landscape and flux decomposition for exploring global natures of non-equilibrium dynamical systems under intrinsic statistical fluctuations. Chem. Phys. Lett. 2011, 505(1-3):75.
-
(2011)
Chem. Phys. Lett.
, vol.505
, Issue.1-3
, pp. 75
-
-
Li, C.1
Wang, E.2
Wang, J.3
-
28
-
-
79954599753
-
Gene circuit designs for noisy excitable dynamics
-
Rué P., Garcia-Ojalvo J. Gene circuit designs for noisy excitable dynamics. Math. Biosci. 2011, 231(1):90.
-
(2011)
Math. Biosci.
, vol.231
, Issue.1
, pp. 90
-
-
Rué, P.1
Garcia-Ojalvo, J.2
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