DNA-templated molecular silver fluorophores

Journal of Physical Chemistry Letters

Volumn 4, Issue 7, 2013, Pages 1148-1155

  Petty, Jeffrey T ^a   Story, Sandra P ^a   Hsiang, Jung Cheng ^b   Dickson, Robert M ^b  

^a FURMAN UNIVERSITY   (United States)

^b GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACKGROUND ENVIRONMENT; DIRECTLY MODULATED; ELECTRONIC LEVELS; OPTICAL BEHAVIOR; PHOTOPHYSICAL PROPERTIES; RADIATIVE RELAXATION; SILVER CLUSTER; SIZE DEPENDENT;

FLUOROPHORES; OLIGONUCLEOTIDES;

DNA;

EID: 84875761572     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz4000142     Document Type: Review

References (56)

1. Lohse, S. E.; Murphy, C. J. Applications of Colloidal Inorganic Nanoparticles: From Medicine to Energy J. Am. Chem. Soc. 2012, 134, 15607-15620
2. Jain, P. K.; Huang, X.; El-Sayed, I. H.; El-Sayed, M. A. Noble Metals on the Nanoscale: Optical and Photothermal Properties and Some Applications in Imaging, Sensing, Biology, and Medicine Acc. Chem. Res. 2008, 41, 1578-1586
3. n Aggregates in Aqueous-Solution: Non-metallic Oligomeric Clusters and Metallic Particles Faraday Disc. 1991, 31-44
4. Haruta, M. Catalysis: Gold Rush Nature 2005, 437, 1098-1099
5. n (n = 10, 20, 35, 56, 84, 120) Tetrahedral Clusters J. Phys. Chem. C 2008, 112, 11272-11279
6. 18 J. Am. Chem. Soc. 2007, 129, 11322-11323
7. 18 Acc. Chem. Res. 2010, 43, 1289-1296
8. Qian, H.; Zhu, M.; Wu, Z.; Jin, R. Quantum Sized Gold Nanoclusters with Atomic Precision Acc. Chem. Res. 2012, 45, 1470-1479
9. de Heer, W. A. The Physics of Simple Metal Clusters: Experimental Aspects and Simple Models Rev. Mod. Phys. 1993, 65, 611-676
10. n, (n = 4-22) J. Chem. Phys. 2008, 129, 194108
11. Tiggesbäumker, J.; Köller, L.; Meiwes-Broer, K.-H.; Liebsch, A. Blue Shift of the Mie Plasma Frequency in Ag Clusters and Particles Phys. Rev. A 1993, 48, R1749-R1752
12. Castleman, A. W.; Khanna, S. N. Clusters, Superatoms, and Building Blocks of New Materials J. Phys. Chem. C 2009, 113, 2664-2675
13. Zheng, J.; Nicovich, P. R.; Dickson, R. M. Highly Fluorescent Noble-Metal Quantum Dots Annu. Rev. Phys. Chem. 2007, 58, 409
14. Clemenger, K. Ellipsoidal Shell Structure in Free-Electron Metal-Clusters Phys. Rev. B 1985, 32, 1359-1362
15. Bigioni, T. P.; Whetten, R. L.; Dag, O. Near-Infrared Luminescence from Small Gold Nanocrystals J. Phys. Chem. B 2000, 104, 6983-6986
16. Zheng, J.; Zhang, C.; Dickson, R. M. Highly Fluorescent, Water-Soluble, Size-Tunable Gold Quantum Dots Phys. Rev. Lett. 2004, 93, art. no. 077402
17. Peyser, L. A.; Vinson, A. E.; Bartko, A. P.; Dickson, R. M. Photoactivated Fluorescence from Individual Silver Nanoclusters Science 2001, 291, 103-106
18. n Nanocluster Photoproduction from Silver Oxide Films J. Phys. Chem. B 2002, 106, 7725-7728
19. Zheng, J.; Dickson, R. M. Individual Water-Soluble Dendrimer-Encapsulated Silver Nanodot Fluorescence J. Am. Chem. Soc. 2002, 124, 13982-13983
20. Yu, J.; Patel, S. A.; Dickson, R. M. In Vitro and Intracellular Production of Peptide-Encapsulated Fluorescent Silver Nanoclusters Angew. Chem., Int. Ed. 2007, 46, 2028-2030
21. Petty, J. T.; Zheng, J.; Hud, N. V.; Dickson, R. M. DNA-Templated Ag Nanocluster Formation J. Am. Chem. Soc. 2004, 126, 5207-5212
22. Daune, M.; Kekker, C. A.; Schachman, H. K. Complexes of Silver Ion with Natural and Synthetic Polynucleotides Biopolymers 1966, 4, 51-76
23. Jensen, R. H.; Davidson, N. Spectrophotometric, Potentiometric, and Density Gradient Ultracentrifugation Studies of the Binding of Silver Ion by DNA Biopolymers 1966, 4, 17-32
24. Patel, S. A.; Richards, C. I.; Hsiang, J.-C.; Dickson, R. M. Water-Soluble Ag Nanoclusters Exhibit Strong Two-Photon-Induced Fluorescence J. Am. Chem. Soc. 2008, 130, 11602-11603
25. Driehorst, T.; O'Neill, P.; Goodwin, P. M.; Pennathur, S.; Fygenson, D. K. Distinct Conformations of DNA-Stabilized Fluorescent Silver Nanoclusters Revealed by Electrophoretic Mobility and Diffusivity Measurements Langmuir 2011, 27, 8923-8933
26. Ritchie, C. M.; Johnsen, K. R.; Kiser, J. R.; Antoku, Y.; Dickson, R. M.; Petty, J. T. Ag Nanocluster Formation Using a Cytosine Oligonucleotide Template J. Phys. Chem. C 2007, 111, 175-181
27. Sengupta, B.; Ritchie, C. M.; Buckman, J. G.; Johnsen, K. R.; Goodwin, P. M.; Petty, J. T. Base-Directed Formation of Fluorescent Silver Clusters J. Phys. Chem. C 2008, 112, 18776-18782
28. Neidig, M. L.; Sharma, J.; Yeh, H.-C.; Martinez, J. S.; Conradson, S. D.; Shreve, A. P. Ag K-Edge EXAFS Analysis of DNA-Templated Fluorescent Silver Nanoclusters: Insight into the Structural Origins of Emission Tuning by DNA Sequence Variations J. Am. Chem. Soc. 2011, 133, 11837-11839
29. Soto-Verdugo, V.; Metiu, H.; Gwinn, E. The Properties of Small Ag Clusters Bound to DNA Bases J. Chem. Phys. 2010, 132, 195102
30. Yu, J. H.; Choi, S.; Dickson, R. M. Shuttle-Based Fluorogenic Silver-Cluster Biolabels Angew. Chem., Int. Ed. 2009, 48, 318-320
31. Richards, C. I.; Choi, S.; Hsiang, J.-C.; Antoku, Y.; Vosch, T.; Bongiorno, A.; Tzeng, Y.-L.; Dickson, R. M. Oligonucleotide-Stabilized Ag Nanocluster Fluorophores J. Am. Chem. Soc. 2008, 130, 5038-5039
32. Sharma, J.; Yeh, H. C.; Yoo, H.; Werner, J. H.; Martinez, J. S. A Complementary Palette of Fluorescent Silver Nanoclusters Chem. Commun. 2010, 46, 3280-3282
33. Petty, J. T.; Story, S. P.; Juarez, S.; Votto, S. S.; Herbst, A. G.; Degtyareva, N. N.; Sengupta, B. Optical Sensing by Transforming Chromophoric Silver Clusters in DNA Nanoreactors Anal. Chem. 2012, 84, 356-364
34. n:DNA J. Phys. Chem. C 2009, 113, 4229-4233
35. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; Sartin, M.; Hsiang, J.-C.; Perry, J. W.; Dickson, R. M. Optically Enhanced, Near-IR, Silver Cluster Emission Altered by Single Base Changes in the DNA Template J. Phys. Chem. B 2011, 115, 7996-8003
36. Petty, J. T.; Fan, C.; Story, S. P.; Sengupta, B.; St. John Iyer, A.; Prudowsky, Z.; Dickson, R. M. DNA Encapsulation of 10 Silver Atoms Producing a Bright, Modulatable, Near-Infrared-Emitting Cluster J. Phys. Chem. Lett. 2010, 1, 2524-2529
37. 19 Anal. Chem. 2012, 84, 5304-5308
38. Schultz, D.; Gwinn, E. G. Silver Atom and Strand Numbers in Fluorescent and Dark Ag:DNAs Chem. Commun. 2012, 48, 5748-5750
39. Choi, S.; Yu, J.; Patel, S. A.; Tzeng, Y.-L.; Dickson, R. M. Tailoring Silver Nanodots for Intracellular Staining Photochem. Photobiol. Sci. 2011, 10, 109-115
40. Lavis, L. D.; Raines, R. T. Bright Ideas for Chemical Biology ACS Chem. Biol. 2008, 3, 142-155
41. Larson, D. R.; Zipfel, W. R.; Williams, R. M.; Clark, S. W.; Bruchez, M. P.; Wise, F. W.; Webb, W. W. Water-Soluble Quantum Dots for Multiphoton Fluorescence Imaging in Vivo Science 2003, 300, 1434-1436
42. Betzig, E.; Patterson, G. H.; Sougrat, R.; Lindwasser, O. W.; Olenych, S.; Bonifacino, J. S.; Davidson, M. W.; Lippincott-Schwartz, J.; Hess, H. F. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution Science 2006, 313, 1642-1645
43. Rust, M. J.; Bates, M.; Zhuang, X. W. Sub-Diffraction-Limit Imaging by Stochastic Optical Reconstruction Microscopy (STORM) Nat. Methods 2006, 3, 793-795
44. Hess, S. T.; Girirajan, T. P. K.; Mason, M. D. Ultra-high Resolution Imaging by Fluorescence Photoactivation Localization Microscopy Biophys. J. 2006, 91, 4258-4272
45. Jablonski, A.; Hsiang, J.; Bagchi, P.; Hull, N.; Richards, C. I.; Fahrni, C. J.; Dickson, R. M. Signal Discrimination between Fluorescent Proteins in Live Cells by Long-Wavelength Optical Modulation J. Phys. Chem. Lett. 2012, 3, 3585-3591
46. Fan, C.; Hsiang, J.-C.; Jablonski, A. E.; Dickson, R. M. All-Optical Fluorescence Image Recovery Using Modulated Stimulated Emission Depletion Chem. Sci. 2011, 2, 1080-1085
47. Dertinger, T.; Heilemann, M.; Vogel, R.; Sauer, M.; Weiss, S. Superresolution Optical Fluctuation Imaging with Organic Dyes Angew. Chem., Int. Ed. 2010, 49, 9441-9443
48. Patel, S. A.; Cozzuol, M.; Hales, J. M.; Richards, C. I.; Sartin, M.; Hsiang, J.-C.; Vosch, T.; Perry, J. W.; Dickson, R. M. Electron Transfer-Induced Blinking in Ag Nanodot Fluorescence J. Phys. Chem. C 2009, 113, 20264-20270
49. Richards, C. I.; Hsiang, J.-C.; Senapati, D.; Patel, S.; Yu, J.; Vosch, T.; Dickson, R. M. Optically Modulated Fluorophores for Selective Fluorescence Signal Recovery J. Am. Chem. Soc. 2009, 131, 4619-4621
50. Richards, C. I.; Hsiang, J.-C.; Dickson, R. M. Synchronously Amplified Fluorescence Image Recovery (SAFIRe) J. Phys. Chem. B 2010, 114, 660-665
51. SantaLucia, J., Jr.; Hicks, D. The Thermodynamics of DNA Structural Motifs Annu. Rev. Biophys. Biomol. Struct. 2004, 33, 415-440
52. Shah, P.; Rorvig-Lund, A.; Ben Chaabane, S.; Thulstrup, P. W.; Kjaergaard, H. G.; Fron, E.; Hofkens, J.; Yang, S. W.; Vosch, T. Design Aspects of Bright Red Emissive Silver Nanoclusters/DNA Probes for Microrna Detection ACS Nano 2012, 6, 8803-8814
53. Guo, W.; Yuan, J.; Dong, Q.; Wang, E. Highly Sequence-Dependent Formation of Fluorescent Silver Nanoclusters in Hybridized DNA Duplexes for Single Nucleotide Mutation Identification J. Am. Chem. Soc. 2010, 132, 932-934
54. Sengupta, B.; Springer, K.; Buckman, J. G.; Story, S. P.; Abe, O. H.; Hasan, Z. W.; Prudowsky, Z. D.; Rudisill, S. E.; Degtyareva, N. N.; Petty, J. T. DNA Templates for Fluorescent Silver Clusters and I-Motif Folding J. Phys. Chem. C 2009, 113, 19518-19524
55. Li, J.; Zhong, X.; Cheng, F.; Zhang, J.-R.; Jiang, L.-P.; Zhu, J.-J. One-Pot Synthesis of Aptamer-Functionalized Silver Nanoclusters for Cell-Type-Specific Imaging Anal. Chem. 2012, 84, 4140-4146
56. Yeh, H.-C.; Sharma, J.; Shih, I.-M.; Vu, D. M.; Martinez, J. S.; Werner, J. H. A Fluorescence Light-Up Ag Nanocluster Probe That Discriminates Single-Nucleotide Variants by Emission Color J. Am. Chem. Soc. 2012, 134, 11550-11558