Erratum: Metal-mediated DNA base pairing: Alternatives to hydrogen-bonded watson-crick base Pairs (Accounts of Chemical Research (2012) 45:12 DOI: 10.1021/ar200313h);Metal-mediated DNA base pairing: Alternatives to hydrogen-bonded Watson-Crick base pairs

Accounts of Chemical Research

Volumn 45, Issue 12, 2012, Pages 2066-2076

  Takezawa, Yusuke ^a   Shionoya, Mitsuhiko ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84871339520     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar300343b     Document Type: Erratum

References (42)

1. Kinbara, K.; Aida, T. Toward intelligent molecular machines: Directed motions of biological and artificial molecules and assemblies Chem. Rev. 2005, 105, 1377-1400
2. Hill, D. J.; Mio, M. J.; Prince, R. B.; Hughes, T. S.; Moore, J. S. A field guide to foldamers Chem. Rev. 2001, 101, 3893-4011
3. Albrecht, M. "Let's twist again"-Double-stranded, triple-stranded, and circular helicates Chem. Rev. 2001, 101, 3457-3497
4. 48 polyhedra and their sharp structural switch upon subtle ligand variation Science 2010, 328, 1144-1147
5. Tanaka, K.; Shionoya, M. Programmable metal assembly on bio-inspired templates Coord. Chem. Rev. 2007, 251, 2732-2742 and references therein.
6. Clever, G. H.; Shionoya, M. Metal-base pairing in DNA Coord. Chem. Rev. 2010, 254, 2391-2402
7. Hirao, I.; Kimoto, M.; Yamashige, R. Natural versus artificial creation of base pairs in DNA: Origin of nucleobases from the perspectives of unnatural base pair studies. Acc. Chem. Res., in press. DOI: 10.1021/ar200257x.
8. 2+ and other divalent metal ions Biochem. Cell Biol. 1993, 71, 162-168
9. Katz, S. The reversible reaction of Hg(II) and double-stranded polynucleotides a step-function theory and its significance Biochim. Biophys. Acta 1963, 68, 240-253
10. Kuklenyik, Z.; Marzilli, L. G. Mercury(II) site-selective binding to a DNA hairpin. Relationship of sequence-dependent intra- and interstrand cross-linking to the hairpin-duplex conformational transition Inorg. Chem. 1996, 35, 5654-5662
11. II-thymine base pairs in DNA duplexes J. Am. Chem. Soc. 2006, 128, 2172-2173
12. Ono, A.; Cao, S.; Togashi, H.; Tashiro, M.; Fujimoto, T.; Machinami, T.; Oda, S.; Miyake, Y.; Okamoto, I.; Tanaka, Y. Specific interactions between silver(I) ions and cytosine-cytosine pairs in DNA duplexes Chem. Commun. 2008, 4825-4827
13. Liu, J.; Lu, Y. Rational design of "turn-on" allosteric DNAzyme catalytic beacons for aqueous mercury ions with ultrahigh sensitivity and selectivity Angew. Chem., Int. Ed. 2007, 46, 7587-7590
14. Park, K. S.; Jung, C.; Park, H. G. "Illusionary" polymerase activity triggered by metal ions: Use for molecular logic-gate operations Angew. Chem., Int. Ed. 2010, 49, 9757-9760
15. Tanaka, K.; Shionoya, M. Synthesis of a novel nucleoside for alternative DNA base pairing through metal complexation J. Org. Chem. 1999, 64, 5002-5003
16. Zimmermann, N.; Meggers, E.; Schultz, P. G. A novel silver(I)-mediated DNA base pair J. Am. Chem. Soc. 2002, 124, 13684-13685
17. Böhme, D.; Düpre, N.; Megger, D. A.; Müller, J. Conformational change induced by metal-ion-binding to DNA containing the artificial 1,2,4-triazole nucleoside Inorg. Chem. 2007, 46, 10114-10119
18. Zhang, L. L.; Meggers, E. An extremely stable and orthogonal DNA base pair with a simplified three-carbon backbone J. Am. Chem. Soc. 2005, 127, 74-75
19. Shin, D. W.; Switzer, C. A metallo base-pair incorporating a terpyridyl-like motif: bipyridylpyrimidinone·Ag(I)·4-pyridine Chem. Commun. 2007, 4401-4403
20. Heuberger, B. D.; Shin, D.; Switzer, C. Two Watson-Crick-like metallo base-pairs Org. Lett. 2008, 10, 1091-1094
21. Tanaka, K.; Tengeiji, A.; Kato, T.; Toyama, N.; Shiro, M.; Shionoya, M. Efficient incorporation of a copper hydroxypyridone base pair in DNA J. Am. Chem. Soc. 2002, 124, 12494-12498
22. Tanaka, K.; Tengeiji, A.; Kato, T.; Toyama, N.; Shionoya, M. A discrete self-assembled metal array in artificial DNA Science 2003, 299, 1212-1213
23. Popescu, D.-L.; Parolin, T. J.; Achim, C. Metal incorporation in modified PNA duplexes J. Am. Chem. Soc. 2003, 125, 6354-6355
24. Schlegel, M. K.; Essen, L.-O.; Meggers, E. Duplex structure of a minimal nucleic acid J. Am. Chem. Soc. 2008, 130, 8158-8159
25. Clever, G. H.; Polborn, K.; Carell, T. A highly DNA-duplex-stabilizing metal-salen base pair Angew. Chem., Int. Ed. 2005, 44, 7204-7208
26. Meggers, E.; Holland, P. L.; Tolman, W. B.; Romesberg, F. E.; Schultz, P. G. A novel copper-mediated DNA base pair J. Am. Chem. Soc. 2000, 122, 10714-10715
27. Atwell, S.; Meggers, E.; Spraggon, G.; Schultz, P. G. Structure of a copper-mediated base pair in DNA J. Am. Chem. Soc. 2001, 123, 12364-12367
28. Kaul, C.; Müller, M.; Wagner, M.; Schneider, S.; Carell, T. Reversible bond formation enables the replication and amplification of a crosslinking salen complex as an orthogonal base pair Nat. Chem. 2011, 3, 794-800
29. Johannsen, S.; Megger, N.; Boehme, D.; Sigel, R. K. O.; Müller, J. Solution structure of a DNA double helix with consecutive metal-mediated base pairs Nat. Chem. 2010, 2, 229-234
30. Clever, G. H.; Carell, T. Controlled stacking of 10 transition-metal ions inside a DNA duplex Angew. Chem., Int. Ed. 2007, 46, 250-253
31. Clever, G. H.; Reitmeier, S. J.; Carell, T.; Schiemann, O. Antiferromagnetic coupling of stacked Cu(II)-salen complexes in DNA Angew. Chem., Int. Ed. 2010, 49, 4927-4929
32. Polonius, F.-A.; Müller, J. An artificial base pair, mediated by hydrogen bonding and metal-ion binding Angew. Chem., Int. Ed. 2007, 46, 5602-5604
33. Zimmermann, N.; Meggers, E.; Schultz, P. G. A second-generation copper(II)-mediated metallo-DNA-base pair Bioorg. Chem. 2004, 32, 13-25
34. Switzer, C.; Sinha, S.; Kim, P. H.; Heuberger, B. D. A purine-like nickel(II) base pair for DNA Angew. Chem., Int. Ed. 2005, 44, 1529-1532
35. Tanaka, K.; Clever, G. H.; Takezawa, Y.; Yamada, Y.; Kaul, C.; Shionoya, M.; Carell, T. Programmable self-assembly of metal ions inside artificial DNA duplexes Nat. Nanotechnol. 2006, 1, 190-194
36. Takezawa, Y.; Tanaka, K.; Yori, M.; Tashiro, S.; Shiro, M.; Shionoya, M. Soft metal-mediated base pairing with novel synthetic nucleosides possessing an O, S -donor ligand J. Org. Chem. 2008, 73, 6092-6098
37. Tanaka, K.; Yamada, Y.; Shionoya, M. Formation of silver(I)-mediated DNA duplex and triplex through an alternative base pair of pyridine nucleobases J. Am. Chem. Soc. 2002, 124, 8802-8803
38. Takezawa, Y.; Maeda, W.; Tanaka, K.; Shionoya, M. Discrete self-assembly of iron(III) ions inside triple-stranded artificial DNA Angew. Chem., Int. Ed. 2009, 48, 1081-1084
39. Mallajosyula, S. S.; Pati, S. K. Conformational tuning of magnetic interactions in metal-DNA complexes Angew. Chem., Int. Ed. 2009, 48, 4977-4981
40. Liu, S.; Clever, G. H.; Takezawa, Y.; Kaneko, M.; Tanaka, K.; Guo, X.; Shionoya, M. Direct conductance measurement of individual metallo-DNA duplexes within single-molecule break junctions Angew. Chem., Int. Ed. 2011, 50, 8886-8890
41. II-T base pairing Angew. Chem., Int. Ed. 2010, 49, 6516-6519
42. Krishnan, Y.; Simmel, F. C. Nucleic acid based molecular devices Angew. Chem., Int. Ed. 2011, 50, 3124-3156