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Volumn 146, Issue 6, 2013, Pages 569-579

Effects of TET1 knockdown on gene expression and DNA methylation in porcine induced pluripotent stem cells

Author keywords

[No Author keywords available]

Indexed keywords

KRUPPEL LIKE FACTOR 2; KRUPPEL LIKE FACTOR 4; LYMPHOID ENHANCER FACTOR 1; MYC PROTEIN; OCTAMER TRANSCRIPTION FACTOR 4; OXYGENASE; STEM CELL FACTOR; TEN ELEVEN TRANSLOCATION1 PROTEIN; TRANSCRIPTION FACTOR GATA 6; TRANSCRIPTION FACTOR NANOG; TRANSCRIPTION FACTOR PITX2; TRANSCRIPTION FACTOR SOX2; UNCLASSIFIED DRUG;

EID: 84886772728     PISSN: 14701626     EISSN: 17417899     Source Type: Journal    
DOI: 10.1530/REP-13-0212     Document Type: Article
Times cited : (15)

References (38)
  • 2
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • DOI 10.1101/gad.947102
    • Bird A 2002 DNA methylation patterns and epigenetic memory. Genes and Development 16 6-21. (doi:10.1101/gad.947102) (Pubitemid 34049633)
    • (2002) Genes and Development , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 3
    • 67349190247 scopus 로고    scopus 로고
    • Linking DNA methylation and histone modification: Patterns and paradigms
    • doi:10.1038/nrg2540
    • Cedar H & Bergman Y 2009 Linking DNA methylation and histone modification: patterns and paradigms. Nature Reviews. Genetics 10 295-304. (doi:10.1038/nrg2540)
    • (2009) Nature Reviews. Genetics , vol.10 , pp. 295-304
    • Cedar, H.1    Bergman, Y.2
  • 4
    • 75649123486 scopus 로고    scopus 로고
    • Pig induced pluripotent stem cells: A new resource for generating genetically modified pigs
    • doi:10.2217/rme.09.56
    • Cheng L & Xiao L 2009 Pig induced pluripotent stem cells: a new resource for generating genetically modified pigs. Regenerative Medicine 4 787-789. (doi:10.2217/rme.09.56)
    • (2009) Regenerative Medicine , vol.4 , pp. 787-789
    • Cheng, L.1    Xiao, L.2
  • 5
    • 79961139741 scopus 로고    scopus 로고
    • Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
    • doi:10.1016/j.stem. 2011.07.010
    • Dawlaty MM, Ganz K, Powell BE, Hu YC, Markoulaki S, Cheng AW, Gao Q, Kim J, Choi SW, Page DC et al. 2011 Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. Cell Stem Cell 9 166-175. (doi:10.1016/j.stem. 2011.07.010)
    • (2011) Cell Stem Cell , vol.9 , pp. 166-175
    • Dawlaty, M.M.1    Ganz, K.2    Powell, B.E.3    Hu, Y.C.4    Markoulaki, S.5    Cheng, A.W.6    Gao, Q.7    Kim, J.8    Choi, S.W.9    Page, D.C.10
  • 6
    • 55049122748 scopus 로고    scopus 로고
    • Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression
    • doi:10.1634/stemcells.2008-0317
    • Eminli S, Utikal J, Arnold K, Jaenisch R & Hochedlinger K 2008 Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression. Stem Cells 26 2467-2474. (doi:10.1634/stemcells.2008-0317)
    • (2008) Stem Cells , vol.26 , pp. 2467-2474
    • Eminli, S.1    Utikal, J.2    Arnold, K.3    Jaenisch, R.4    Hochedlinger, K.5
  • 8
    • 67650485688 scopus 로고    scopus 로고
    • Derivation of induced pluripotent stem cells from pig somatic cells
    • doi:10.1073/pnas.0905284106
    • Ezashi T, Telugu BP, Alexenko AP, Sachdev S, Sinha S & Roberts RM 2009 Derivation of induced pluripotent stem cells from pig somatic cells. PNAS 106 10993-10998. (doi:10.1073/pnas.0905284106)
    • (2009) PNAS , vol.106 , pp. 10993-10998
    • Ezashi, T.1    Telugu, B.P.2    Alexenko, A.P.3    Sachdev, S.4    Sinha, S.5    Roberts, R.M.6
  • 10
    • 84860378636 scopus 로고    scopus 로고
    • Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity
    • doi:10.1093/nar/gkr1253
    • Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G & Jothi R 2012 Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity. Nucleic Acids Research 40 3364-3377. (doi:10.1093/nar/gkr1253)
    • (2012) Nucleic Acids Research , vol.40 , pp. 3364-3377
    • Freudenberg, J.M.1    Ghosh, S.2    Lackford, B.L.3    Yellaboina, S.4    Zheng, X.5    Li, R.6    Cuddapah, S.7    Wade, P.A.8    Hu, G.9    Jothi, R.10
  • 12
    • 84872770694 scopus 로고    scopus 로고
    • Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
    • doi:10.1126/science.1229277
    • Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down TA & Surani MA 2013 Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine. Science 339 448-452. (doi:10.1126/science.1229277)
    • (2013) Science , vol.339 , pp. 448-452
    • Hackett, J.A.1    Sengupta, R.2    Zylicz, J.J.3    Murakami, K.4    Lee, C.5    Down, T.A.6    Surani, M.A.7
  • 13
    • 65249173999 scopus 로고    scopus 로고
    • An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network
    • doi:10.1073/pnas.0812888106
    • Ho L, Jothi R, Ronan JL, Cui K, Zhao K & Crabtree GR 2009a An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. PNAS 106 5187-5191. (doi:10.1073/pnas.0812888106)
    • (2009) PNAS , vol.106 , pp. 5187-5191
    • Ho, L.1    Jothi, R.2    Ronan, J.L.3    Cui, K.4    Zhao, K.5    Crabtree, G.R.6
  • 14
    • 65249180173 scopus 로고    scopus 로고
    • An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell selfrenewal and pluripotency
    • doi:10.1073/pnas. 0812889106
    • Ho L, Ronan JL, Wu J, Staahl BT, Chen L, Kuo A, Lessard J, Nesvizhskii AI, Ranish J & Crabtree GR 2009b An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell selfrenewal and pluripotency. PNAS 106 5181-5186. (doi:10.1073/pnas. 0812889106)
    • (2009) PNAS , vol.106 , pp. 5181-5186
    • Ho, L.1    Ronan, J.L.2    Wu, J.3    Staahl, B.T.4    Chen, L.5    Kuo, A.6    Lessard, J.7    Nesvizhskii, A.I.8    Ranish, J.9    Crabtree, G.R.10
  • 15
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • doi:10.1038/nature09303
    • Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC & Zhang Y 2010 Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466 1129-1133. (doi:10.1038/nature09303)
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 17
    • 79551587102 scopus 로고    scopus 로고
    • Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
    • doi:10.1016/j.stem.2011.01.008
    • Koh KP, Yabuuchi A, Rao S, Huang Y, Cunniff K, Nardone J, Laiho A, Tahiliani M, Sommer CA, Mostoslavsky G et al. 2011 Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell 8 200-213. (doi:10.1016/j.stem.2011.01.008)
    • (2011) Cell Stem Cell , vol.8 , pp. 200-213
    • Koh, K.P.1    Yabuuchi, A.2    Rao, S.3    Huang, Y.4    Cunniff, K.5    Nardone, J.6    Laiho, A.7    Tahiliani, M.8    Sommer, C.A.9    Mostoslavsky, G.10
  • 18
    • 0035710746 scopus 로고    scopus 로고
    • -ΔΔCT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ & Schmittgen TD 2001 Analysis of relative gene expression data using real-time quantitative PCR and the 2 (KDelta Delta C (T)) method. Methods 25 402-408. (doi:10.1006/meth.2001.1262) (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 19
    • 83455218560 scopus 로고    scopus 로고
    • Global epigenetic changes during somatic cell reprogramming to iPS cells
    • doi:10.1093/jmcb/mjr028
    • Mattout A, Biran A & Meshorer E 2011 Global epigenetic changes during somatic cell reprogramming to iPS cells. Journal of Molecular Cell Biology 3 341-350. (doi:10.1093/jmcb/mjr028)
    • (2011) Journal of Molecular Cell Biology , vol.3 , pp. 341-350
    • Mattout, A.1    Biran, A.2    Meshorer, E.3
  • 20
    • 45449114804 scopus 로고    scopus 로고
    • The colorful history of active DNA demethylation
    • DOI 10.1016/j.cell.2008.06.009, PII S0092867408007617
    • Ooi SK & Bestor TH 2008 The colorful history of active DNA demethylation. Cell 133 1145-1148. (doi:10.1016/j.cell.2008.06.009) (Pubitemid 351852922)
    • (2008) Cell , vol.133 , Issue.7 , pp. 1145-1148
    • Ooi, S.K.T.1    Bestor, T.H.2
  • 23
    • 33645768490 scopus 로고    scopus 로고
    • Inhibition of SIRT1 reactivates silenced cancer genes without loss of promoter DNA hypermethylation
    • doi:10.1371/journal.pgen. 0020040
    • Pruitt K, Zinn RL, Ohm JE, McGarvey KM, Kang SH, Watkins DN, Herman JG & Baylin SB 2006 Inhibition of SIRT1 reactivates silenced cancer genes without loss of promoter DNA hypermethylation. PLoS Genetics 2 e40. (doi:10.1371/journal.pgen. 0020040)
    • (2006) PLoS Genetics , vol.2
    • Pruitt, K.1    Zinn, R.L.2    Ohm, J.E.3    McGarvey, K.M.4    Kang, S.H.5    Watkins, D.N.6    Herman, J.G.7    Baylin, S.B.8
  • 24
    • 57749102814 scopus 로고    scopus 로고
    • Mouse meningiocytes express Sox2 and yield high efficiency of chimeras after nuclear reprogramming with exogenous factors
    • doi:10.1074/jbc. M806788200
    • Qin D, Gan Y, Shao K, Wang H, Li W, Wang T, He W, Xu J, Zhang Y, Kou Z et al. 2008 Mouse meningiocytes express Sox2 and yield high efficiency of chimeras after nuclear reprogramming with exogenous factors. Journal of Biological Chemistry 283 33730-33735. (doi:10.1074/jbc. M806788200)
    • (2008) Journal of Biological Chemistry , vol.283 , pp. 33730-33735
    • Qin, D.1    Gan, Y.2    Shao, K.3    Wang, H.4    Li, W.5    Wang, T.6    He, W.7    Xu, J.8    Zhang, Y.9    Kou, Z.10
  • 25
    • 84857742284 scopus 로고    scopus 로고
    • DNA methylation does not stably lock gene expression but instead serves as a molecular mark for gene silencing memory
    • doi:10.1158/0008-5472. CAN-11-3248
    • Raynal NJ, Si J, Taby RF, Gharibyan V, Ahmed S, Jelinek J, Estecio MR & Issa JP 2012 DNA methylation does not stably lock gene expression but instead serves as a molecular mark for gene silencing memory. Cancer Research 72 1170-1181. (doi:10.1158/0008-5472. CAN-11-3248)
    • (2012) Cancer Research , vol.72 , pp. 1170-1181
    • Raynal, N.J.1    Si, J.2    Taby, R.F.3    Gharibyan, V.4    Ahmed, S.5    Jelinek, J.6    Estecio, M.R.7    Issa, J.P.8
  • 26
    • 38349100549 scopus 로고    scopus 로고
    • Epigenetic events in mammalian germ-cell development: Reprogramming and beyond
    • doi:10.1038/nrg2295
    • Sasaki H & Matsui Y 2008 Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nature Reviews. Genetics 9 129-140. (doi:10.1038/nrg2295)
    • (2008) Nature Reviews. Genetics , vol.9 , pp. 129-140
    • Sasaki, H.1    Matsui, Y.2
  • 28
    • 70349446099 scopus 로고    scopus 로고
    • Feeder-free derivation of induced pluripotent stem cells from adult human adipose stem cells
    • doi:10.1073/pnas.0908450106
    • Sun N, Panetta NJ, Gupta DM, Wilson KD, Lee A, Jia F, Hu S, Cherry AM, Robbins RC, Longaker MT et al. 2009 Feeder-free derivation of induced pluripotent stem cells from adult human adipose stem cells. PNAS 106 15720-15725. (doi:10.1073/pnas.0908450106)
    • (2009) PNAS , vol.106 , pp. 15720-15725
    • Sun, N.1    Panetta, N.J.2    Gupta, D.M.3    Wilson, K.D.4    Lee, A.5    Jia, F.6    Hu, S.7    Cherry, A.M.8    Robbins, R.C.9    Longaker, M.T.10
  • 29
    • 33847076246 scopus 로고    scopus 로고
    • Genetic and epigenetic regulators of pluripotency
    • DOI 10.1016/j.cell.2007.02.010, PII S0092867407001912
    • Surani MA, Hayashi K & Hajkova P 2007 Genetic and epigenetic regulators of pluripotency. Cell 128 747-762. (doi:10.1016/j.cell.2007. 02.010) (Pubitemid 46273582)
    • (2007) Cell , vol.128 , Issue.4 , pp. 747-762
    • Surani, M.A.1    Hayashi, K.2    Hajkova, P.3
  • 31
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • DOI 10.1016/j.cell.2006.07.024, PII S0092867406009767
    • Takahashi K & Yamanaka S 2006 Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126 663-676. (doi:10.1016/j.cell.2006.07.024) (Pubitemid 44233629)
    • (2006) Cell , vol.126 , Issue.4 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 32
    • 84864652041 scopus 로고    scopus 로고
    • Proliferative capacity and pluripotent characteristics of porcine adult stem cells derived from adipose tissue and bone marrow
    • doi:10.1089/cell.2011.0098
    • Tang L, Yin Y, Zhou H, Song G, Fan A, Tang B, Shi W & Li Z 2012 Proliferative capacity and pluripotent characteristics of porcine adult stem cells derived from adipose tissue and bone marrow. Cellular Reprogramming 14 342-352. (doi:10.1089/cell.2011.0098)
    • (2012) Cellular Reprogramming , vol.14 , pp. 342-352
    • Tang, L.1    Yin, Y.2    Zhou, H.3    Song, G.4    Fan, A.5    Tang, B.6    Shi, W.7    Li, Z.8
  • 34
    • 79956302047 scopus 로고    scopus 로고
    • TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
    • doi:10.1038/nature10066
    • Williams K, Christensen J & Pedersen MT 2011 TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature 473 343-348. (doi:10.1038/nature10066)
    • (2011) Nature , vol.473 , pp. 343-348
    • Williams, K.1    Christensen, J.2    Pedersen, M.T.3
  • 36
    • 79956292024 scopus 로고    scopus 로고
    • Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
    • doi:10.1038/nature09934
    • Wu H, D'Alessio AC, Ito S, Xia K, Wang Z, Cui K, Zhao K, Sun YE & Zhang Y 2011 Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 473 389-393. (doi:10.1038/nature09934)
    • (2011) Nature , vol.473 , pp. 389-393
    • Wu, H.1    D'Alessio, A.C.2    Ito, S.3    Xia, K.4    Wang, Z.5    Cui, K.6    Zhao, K.7    Sun, Y.E.8    Zhang, Y.9
  • 37
    • 79955948324 scopus 로고    scopus 로고
    • Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
    • doi:10.1016/j.molcel.2011.04.005
    • Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera AJ, Zheng L, Zhang H, Huang S et al. 2011 Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Molecular Cell 42 451-464. (doi:10.1016/j.molcel.2011.04.005)
    • (2011) Molecular Cell , vol.42 , pp. 451-464
    • Xu, Y.1    Wu, F.2    Tan, L.3    Kong, L.4    Xiong, L.5    Deng, J.6    Barbera, A.J.7    Zheng, L.8    Zhang, H.9    Huang, S.10
  • 38
    • 84871438065 scopus 로고    scopus 로고
    • Tet1 controls meiosis by regulating meiotic gene expression
    • doi:10.1038/nature11709
    • Yamaguchi S, Hong K, Liu R, Shen L, Inoue A, Diep D, Zhang K & Zhang Y 2012 Tet1 controls meiosis by regulating meiotic gene expression. Nature 492 443-447. (doi:10.1038/nature11709)
    • (2012) Nature , vol.492 , pp. 443-447
    • Yamaguchi, S.1    Hong, K.2    Liu, R.3    Shen, L.4    Inoue, A.5    Diep, D.6    Zhang, K.7    Zhang, Y.8


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